BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489492
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26700.1 | Symbols: | RmlC-like cupins superfamily protein ... 1166 0.0
AT5G26710.1 | Symbols: | Glutamyl/glutaminyl-tRNA synthetase, ... 117 2e-25
> AT5G26700.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:9308290-9309625 REVERSE LENGTH=868
Length=868
Score = 1166 bits (631), Expect = 0.0
Identities = 739/791 (93%), Gaps = 7/791 (1%)
Strand=Plus/Plus
Query 1 ATTGTGAATTTATTCGTAA-TTATAAATTCATCAAAAACAAACTCTTTTCTG--AAAAAT 57
|||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATTGTGAATTTATTAGTAATTTATAAATTCATCAAAAACAAACTCTTTTCAGAAAAAAAA 60
Query 58 TAACAACAACAACAATAATGGCGTCTTTTGCAACCCATCTTGTTGTTGTTGTTACCATGA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TAACAACAACAACAATAATGGCGTCTTTTGCAACCCATCTTGTTGTTGTTGTTACAATGT 120
Query 118 TGGTCGCAGCCGTGGCCGCCGCGGAGATGCTTCAAGATGTTTGTGTTGCTGATTTGTCTA 177
|| | | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTTTGTAGCCATGGCCTCCGCGGAGATGCTTCAAGATGTTTGTGTTGCTGATTTGTCTA 180
Query 178 ATGCGGTCAAGGTCAACGGATACACTTGCAAGGACTCAACACAAATAACACCGGAAGACT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 ATGCGGTCAAGGTCAACGGATACACTTGCAAGGACTCAACACAAATAACACCAGAAGACT 240
Query 238 TCTACTTCAAAGGCTTAGCCACCATCGCCGCCACAAACACCTCCACCGGCTCAGTCGTGA 297
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 241 TCTACTTCAAAGGCTTAGCCAACATTGCCGCCACAAACACCTCTACCGGCTCAGTCGTGA 300
Query 298 CCGGAGCCAATGTAGAGAAGCTACCAGGACTCAACACTCTCGGCCTCTCCATGTCCCGCA 357
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGAGCCAACGTAGAAAAGCTACCGGGACTCAACACTCTCGGCCTCTCCATGTCCCGCA 360
Query 358 TCGACTACGCCCCAAATGGCCTAAACCCACCTCATATCCATCCACGCGCCTCCGAGATCA 417
|||||||||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 361 TCGACTACGCCCCAAACGGCCTAAACCCACCCCATGTCCACCCACGTGCCTCCGAGATCA 420
Query 418 TTTTCGTCCTTGAAGGTCAGCTCTACGTCGGCTTTGTAACAACCGGC-GGAAAACTCATC 476
||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||
Sbjct 421 TTTTCGTCCTTGAAGGTCAGCTCTATGTTGGCTTTGTAACAACCG-CTGGAAAACTCATC 479
Query 477 GCCAA-ATACCTTAACAAGGGAGACGTTTTCGCCTTCCCAAAGGGACTCCTCCATTTCCA 535
||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 480 GCCAAGA-ACCTTAACAAGGGAGACGTTTTCACCTTCCCCAAGGGACTCATCCATTTCCA 538
Query 536 GAAGAACATTGCCAACTCTCCAGCATCTGTACTCGCAGCCTTCGATAGCCAACTGCCTGG 595
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 539 GAAGAACATTGCCAACAGTCCAGCATCTGTACTCGCAGCCTTCGATAGCCAATTGCCCGG 598
Query 596 AACACAATCACTTGTAGCCTCTCTCTTTGGAGCTCTTCCTGACAACATTCTCGTCAAATC 655
||||||||||||||| ||||||||||||||||||||||| || ||||||| | ||| ||
Sbjct 599 AACACAATCACTTGTCGCCTCTCTCTTTGGAGCTCTTCCCGATGACATTCTGGCCAAGTC 658
Query 656 ATTCCAGCTCAAACCCAAACAGGTTAAGAAGATCAAATTGAGATACACACCCAAGATATG 715
|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 659 ATTCCAGCTCAAACACAAACAGGTTAAGAAGATCAAACTGAGATACGCACCCAAGAAATG 718
Query 716 AGTTTGTTTTTGTCTCTATTGTAAACACTAAGCAAAGAAGAATGAATCAAGATAAAGTTT 775
||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 AGTTTGTTTTTGTTTATATTGTAAACACTAAGCAAAGAAGAATGAATCAATATAAAGTTT 778
Query 776 GCAACTTTAAA 786
|||||||||||
Sbjct 779 GCAACTTTAAA 789
> AT5G26710.1 | Symbols: | Glutamyl/glutaminyl-tRNA synthetase,
class Ic | chr5:9305513-9308440 FORWARD LENGTH=2513
Length=2513
Score = 117 bits (63), Expect = 2e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 715 GAGTTTGTTTTTGTCTCTATTGTAAACACTAAGCAAAGAAGAATGAATCAAGATAAAGTT 774
|||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2513 GAGTTTGTTTTTGTTTATATTGTAAACACTAAGCAAAGAAGAATGAATCAATATAAAGTT 2454
Query 775 TGCAACTTTAAA 786
||||||||||||
Sbjct 2453 TGCAACTTTAAA 2442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5