BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489493
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26680.1 | Symbols: | 5'-3' exonuclease family protein | ch... 2211 0.0
> AT5G26680.1 | Symbols: | 5'-3' exonuclease family protein |
chr5:9311882-9315475 REVERSE LENGTH=1379
Length=1379
Score = 2211 bits (1197), Expect = 0.0
Identities = 1322/1380 (96%), Gaps = 17/1380 (1%)
Strand=Plus/Plus
Query 1 CTTTCTCTGTAACCGCCATGGGTATTAAGGGTTTAACGAAGCTTTTAGCCGACAATGCGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTTCTCTGTAACCGCCATGGGTATTAAGGGTTTAACGAAGCTTTTAGCCGACAATGCGC 60
Query 61 CAAGTTGTATGAAAGAACAGAAATTCGAGAGCTATTTCGGTCGGAAAATCGCTGTTGATG 120
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CTAGTTGTATGAAAGAACAGAAATTCGAGAGCTATTTTGGTCGGAAAATCGCTGTTGATG 120
Query 121 CTAGCATGAGCATTTACCAATTCCTTATTGTTGTAGGAAGAACTGGGACTGAAATGCTCA 180
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 121 CTAGCATGAGCATTTACCAATTCCTCATTGTTGTTGGAAGAACTGGGACTGAAATGCTCA 180
Query 181 CTAATGAAGCTGGTGAAGTCACTAGTCATTTACAAGGGATGTTTAATCGAACGATTCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAATGAAGCTGGTGAAGTCACTAGTCATTTACAAGGGATGTTTAATCGAACGATTCGTC 240
Query 241 TTCTTGAAGCTGGAATTAAGCCTGTCTATGTTTTCGATGGAAAGCCCCCGGAGTTAAAGA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TTCTTGAAGCTGGAATTAAGCCTGTCTATGTTTTCGATGGGAAGCCCCCGGAGTTAAAGA 300
Query 301 GACAAGAACTGGCAAAACGTTACTCGAAGAGAGCCGATGCAACTGCAGATTTGACTGGTG 360
|||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 301 GACAGGAACTGGCTAAACGTTACTCCAAGAGAGCTGATGCAACTGCAGATTTGACTGGTG 360
Query 361 CAATTGAGGCAGGAAACAAGGAGGACATTGAGAAGTACAGCAAACGAACTGTGAAGGTGA 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATTGAGGCAGGAAACAAGGAAGACATTGAGAAGTACAGCAAACGAACTGTGAAGGTGA 420
Query 421 CAAAACAGCACAATGACGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCCGTTGTTG 480
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTG 480
Query 481 AGGCCACTTCCGAGGCTGAAGCGCAATGTGCTGCACTTTGCAAGTCAGGAAAGGTTTATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGCCACTTCCGAGGCTGAAGCGCAATGTGCTGCACTTTGCAAGTCAGGAAAGGTTTATG 540
Query 541 GTGTGGCTTCTGAAGATATGGATTCCTTGACTTTTGGAGCTCCTAAGTTTCTTCGCCACC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTGGCTTCTGAAGATATGGATTCCTTGACTTTTGGAGCTCCTAAGTTTCTTCGCCACC 600
Query 601 TGATGGATCCTAGCTCCAGAAAGATCCCTGTCATGGAATTTGAAGTTGCTAAGATTTTAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGATGGATCCTAGCTCCAGAAAGATCCCTGTCATGGAATTTGAAGTTGCTAAGATTTTAG 660
Query 661 AAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGCATATTGTCTGGATGTGACT 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 AAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACT 720
Query 721 ATTGTGACAGCATCCGAGGTATCGGAGGGCAGACTGCCCTAAAGCTCATTCGCCAGCATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGTGACAGCATCCGAGGTATCGGAGGGCAGACTGCCCTAAAGCTCATTCGCCAGCATG 780
Query 781 GATCTATTGAGACTATACTCGAAAATCTAAACAAAGAAAGGTATCAAATACCCGAGGAAT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 GATCTATTGAGACTATACTCGAAAATCTAAACAAAGAAAGGTATCAAATACCTGAGGAAT 840
Query 841 GGCCATATAACGAAGCTCGAAAACTTTTTAAAGAACCTGATGTCATAACAGATGAGGAGC 900
|||||||||| ||||||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 841 GGCCATATAATGAAGCTCGAAAACTTTTCAAAGAACCTGACGTAATAACAGACGAAGAGC 900
Query 901 AGCTTGATATTAAGTGGACCTCTCCAGATGAAGAGGGTATAGTTCAGTTTTTGGTGAATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGCTTGATATTAAGTGGACCTCTCCAGATGAAGAGGGTATAGTTCAGTTTTTGGTGAATG 960
Query 961 AAAATGGATTCAACATAGACAGGGTAACCAAGGCGATAGAGAAAATTAAAACTGCGAAGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAATGGATTCAACATAGACAGGGTAACCAAGGCGATAGAGAAAATTAAAACTGCGAAGA 1020
Query 1021 ACAAATCATCCCAGGGCAGGCTGGAATCATTTTTCAAGCCAGTTGCTAACTCATCCGTGC 1080
| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1021 ATAAATCATCGCAGGGCAGGCTGGAGTCATTTTTCAAGCCAGTTGCTAACTCATCCGTAC 1080
Query 1081 CTGCTAAGAGAAAGGGAAACCTTATATGCCTAGTTGTCTCTGAGGTGATTCCTCAATATA 1140
|||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct 1081 CTGCTAAGAGAAAGGGAAACCTTATATGCCTAGTTGCCTCCGAAGTGATTCC-CAATATA 1139
Query 1141 CTGGATCACAGGGTACCAAATGCTTGCTCCGGCAGTATAAACCAGCTATCAGCAATAAAG 1200
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1140 CTGGATCACAGGGTACCAAATGCTTGCTCAGGCAGTATAAACCAGCCATCAGCAATAAAG 1199
Query 1201 TCTCCTCTCTGCATGCTTTTGGATGGAACTCCTCCAAAAACATTGTTAGCATTAGGCTGT 1260
|||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||
Sbjct 1200 TCTCCTCTCTGCATGCTTTTGGATGGTACTCCTCCGATAACATTGTTAGCGTTAGGCTGT 1259
Query 1261 TTTCTCTATCCTGGGGTTTCAACCTTTCGG---A-A-------A-----TCCCAGAGAGT 1304
| ||||||||| ||| || ||||||||||| | | | |||||||||||
Sbjct 1260 TCTCTCTATCCCGGGCTTCCAACCTTTCGGTTCACATGGCTGGAGGAAATCCCAGAGAGT 1319
Query 1305 ACCACTAAAGGAGCAGCAAATAAGAAAACTAAGGGAGGTGGTGGAAGGAAGAAGAAGTAA 1364
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1320 ACCACTAAAGGAGCAGCAAATAAGAAAACCAAAGGAGCTGGTGGAAGGAAGAAGAAGTAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5