BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489494
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26670.1 | Symbols: | Pectinacetylesterase family protein |... 2167 0.0
> AT5G26670.1 | Symbols: | Pectinacetylesterase family protein
| chr5:9318282-9320987 FORWARD LENGTH=1596
Length=1596
Score = 2167 bits (1173), Expect = 0.0
Identities = 1350/1434 (94%), Gaps = 18/1434 (1%)
Strand=Plus/Plus
Query 1 CTC-TGtctctttcttc-ttcttcttcttcttcttctttctCATTAAAAGCTGAACACAA 58
||| || |||| || || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 5 CTCTTGCCTCTGTC-TCTTTCTTCTTCTTCTTCTTC-TTCTCATTAAAAGCTGAACACAA 62
Query 59 AGATCAATTCTTTCACTAACACATTGCCAGTTTCTGCATTTGTTTTATATCCTTTTTTCT 118
||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 63 AGATCTATTCTTTCACTAACACATTACCAGTTTCTGCATTTGTATTATATCC--TTTTCT 120
Query 119 AAAACTTTTAACCATTCTTTCTCCATTCCCAGTTCTT------AG---A-AGCAATGAGG 168
||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 121 AAAACTTTTAACCATTCTTTCTCCATTCCCAGTTCTTAGAAAGAGTCAAGAGCAATGAGG 180
Query 169 AAGCTTTTCGTGTTAGGGTTTGTAGTTGCAGGACTGATTC-TGGTGACTGAAGCAAAAGG 227
||||||||| ||||||||||| |||||||||||||| ||| ||| || ||| ||||| ||
Sbjct 181 AAGCTTTTCTTGTTAGGGTTTATAGTTGCAGGACTGGTTCTTGG-GAATGAGGCAAATGG 239
Query 228 GTATTTTGAGTTCAATGTCACTGAGTTAGATCACATTGAGGAATTAGAGTTTGGTTTCTC 287
|||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 240 GTATTTAGAGTTCAATGTCACTGAATTAGATCGCATTGAGGATTTAGAGTTTGGTTTCTC 299
Query 288 CAAATTTAGTTCCAATTTCAATCCATTAATGGTTGGTCTCACACTTATCAGAGGAGCTGG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAATTTAGTTCCAATTTCAATCCATTAATGGTTGGTCTCACACTTATCAGAGGAGCTGG 359
Query 348 TTCCAAAGGAGCTGTTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACA 407
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTAAAGGAGCTGTTTGTTTGGATGGTACATTGCCTGGATATCACTTACATCGTGGACA 419
Query 408 CGGATCTGGAGCCAATAGCTGGCTCATTCAATTAGAGGGAGGAGGATGGTGTGACAACAT 467
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 420 TGGATCTGGAGCCAATAGCTGGTTAATTCAATTAGAGGGAGGAGGATGGTGTGACAACAT 479
Query 468 AAGGAACTGTGTATACCGAAAGAAGTCGCGTCGTGGATCGTCTAACTATATGGAGAAACA 527
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 480 TAGGAACTGTGTATACCGAAAGAAGTCGCGTCGCGGATCTTCTAACTATATGGAGAAACA 539
Query 528 GATACAGTTTACAGGAATACTTAGCAATAAAGTTCAAGAAAATCCAGAtttttttAACTG 587
||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 540 AATACAGTTTACAGGAATACTTAGCAATAAAGCTCAAGAAAATCCAGACTTTTTCAACTG 599
Query 588 GAATAGAGTTAAGCTTCGTTATTGCGATGGTGGTTCCTTCAGTGGAGATAGTCAGAACAA 647
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAATCGAGTTAAGCTTCGTTACTGCGATGGTGGTTCCTTCAGTGGAGATAGTCAGAACAA 659
Query 648 GGCTGCAGGGCTTCAGTTTAGAGGAGAGAAGATATGGAGAGCCGCAATGGACGATTTGAA 707
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCTGCACGGCTTCAGTTTAGAGGAGAGAAGATATGGAGAGCCGCAATGGACGATTTGAA 719
Query 708 GGCAAAGGGAATGCGAAATGCGAAACAGGCACTTCTATCTGGATGCTCTGCAGGCGGTCT 767
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 720 GGCAAAGGGAATGCGAAATGCGAAACAGGCACTTCTATCTGGTTGCTCTGCAGGTGGTCT 779
Query 768 AGCAGTGATTTTACGCTGTGACGAATTCAGAAACTTGTTTTCAGGAAGTACCAAAGTCAA 827
|||||| ||||||||||||||||||||||||||||||||||| ||| | |||| ||| ||
Sbjct 780 AGCAGTTATTTTACGCTGTGACGAATTCAGAAACTTGTTTTCTGGATGGACCAGAGTTAA 839
Query 828 ATGCTTAAGTGATGCAGGCTTGTTCTTGGACACGCCTGATGTATCCGGTGGCCACACGAT 887
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 840 ATGCTTAAGTGATGCAGGCTTGTTCTTGGACACGCCTGATGTATCCGGTGGACACACTAT 899
Query 888 AAGGAACCTATATAACAGCGTTGTGCAGTTGCAGGGAGTGAAGAACAATTTGCCACATTT 947
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGGAATTTATATAACGGCGTTGTGCAGTTGCAGGGAGTGAAGAACAATTTGCCACATTT 959
Query 948 ATGCACTAACCATCTCAATCCAACCTCTTGTTTCTTCCCTCAAAACTTGATCAGTCAGAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATGCACTAACCATCTCAATCCAACCTCTTGTTTCTTCCCTCAAAACTTGATCAGTCAGAT 1019
Query 1008 GAAAACTCCTCTTTTTATTGTCAATGCAGCTTATGATATTTGGCAGATTCAAAGTAGTAT 1067
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1020 GAAAACTCCTCTTTTCATTGTCAATGCAGCATATGATATTTGGCAGATTCAAAGCAGTAT 1079
Query 1068 CGCTCCGCCAAGTGCAGATCCTAGTGGTTATTGGCATGAATGCAGATTAAACCATGGAAG 1127
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1080 CGCTCCGCCGAGTGCAGATCCTAGTGGTTATTGGCATGAATGCAGATTAAACCACGGTAG 1139
Query 1128 ATGCACCCCAGCACAGATCCAGTTCTTGCAAGGGTTTAGAAATCAAATGTTGAGAGCTGT 1187
|||||| || || ||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 ATGCACTCCGGCGCAGATACGGTTCTTGCAAGGGTTTAGAAACCAAATGTTGAGAGCTGT 1199
Query 1188 GAGGGGTTTTTCGAATTTGAAAAAGAACGGTTTGTTTATCAATTCTTGCTTTGCTCATTG 1247
||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 GAGTGGTTTCTCGAATTCGAAAAAGAACGGTTTGTTCATCAATTCTTGCTTTGCTCATTG 1259
Query 1248 CCAAACCGAAAGACAAGACACTTGGTTCGCCGATGATTCTCCTGTTATCCACAAAAAGGC 1307
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 CCAAACCGAAAGGCAAGACACTTGGTTCGCCGATGATTCTCCTGTTATACACAAAAAGGC 1319
Query 1308 TGTTGCGATAGCGGTTGGAGATTGGTATTTTGATAGAGCTGAAGTGAAGCTAATAGATTG 1367
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 GGTGGCGATAGCGGTTGGAGATTGGTATTTCGATAGAGCTGAAGTGAAGCTAATAGATTG 1379
Query 1368 TCCATATCCGTGTGATAGGAGTTGCCACAATCTGGTCTTCAGATGAATGATCTT 1421
|||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1380 TCCATACCCGTGTGATAGGAGCTGTCACAATCTGGTCTTCAGATGAATGATCTT 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5