BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489496
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86 |... 1949 0.0
AT3G08500.1 | Symbols: MYB83, AtMYB83 | myb domain protein 83 |... 106 6e-22
AT4G05100.1 | Symbols: AtMYB74, MYB74 | myb domain protein 74 |... 84.2 3e-15
> AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86
| chr5:9331573-9333174 REVERSE LENGTH=1391
Length=1391
Score = 1949 bits (1055), Expect = 0.0
Identities = 1270/1369 (93%), Gaps = 33/1369 (2%)
Strand=Plus/Plus
Query 1 AATCATAGTTTCTCTCATTTTATAATAA--TTCTCCATCTTCTTCCTTCATCTTCAAGTT 58
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 1 AATCATAGTTTCTCTCATTTTATAATAATTTTCTCCATCTTCTTCCTTCCTCTTCAAGCT 60
Query 59 TATAGAACCTTCACA-AATCATAAAACTCTCTCT--AACTCTCTGCA-ACAATC-T-A-T 111
|||||||||| || | || ||||||||||||||| ||| ||| | || || | | |
Sbjct 61 TATAGAACCTCCA-AGAACCATAAAACTCTCTCTGCAACAATCT--ATACTTTCTTCATT 117
Query 112 AC-TTT-CAAAAAATGGGAAGACATTCTTGTTGTTTTAAGCAGAAGCTACGAAAAGGCCT 169
|| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 118 ACTTTTATAAAAAATGGGAAGACATTCTTGTTGTTTTAAGCAGAAGCTAAGAAAAGGCCT 177
Query 170 TTGGTCTCCCGAGGAAGATGAGAAACTTCTCAATTATATCACTAGACATGGTCATGGCTG 229
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 178 TTGGTCTCCTGAAGAAGATGAGAAACTTCTCAATTACATCACTAGACATGGTCATGGCTG 237
Query 230 TTGGAGTTCTGTCCCTAAACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGGAGTTCTGTCCCTAAACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAG 297
Query 290 ATGGATAAATTATTTGAGACCAGATTTAAAGAGAGGAGCTTTCTCGCAAGACGAAGAAAG 349
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 GTGGATAAATTATTTGAGACCAGATTTAAAGAGAGGAGCTTTCTCTCAAGACGAAGAAAG 357
Query 350 CTTAATCATTGAGCTCCATGCTGCATTAGGCAACAGGTGGTCTCAAATCGCAACGCGGTT 409
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 CTTGATCATTGAGCTCCATGCTGCATTAGGCAACAGATGGTCTCAAATCGCAACGCGGTT 417
Query 410 ACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAACTCATGTCTTAAGAAGAAGCT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAACTCATGTCTTAAGAAGAAGCT 477
Query 470 GAGAAGAAAAGGCATTGACCCAACAACACATAAACCCCTAATAACAAGCGAGCTTCAATC 529
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 478 GAGAAGAAAAGGCATTGACCCAACAACACATAAACCCTTAATAACAAACGAGCTTCAATC 537
Query 530 TCTTAACGTCATAGATCAGAAACTGACGTCATCAGAATTAGTAAAGTCAACGGGTTCGAT 589
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 538 TCTTAACGTCATAGATCAGAAACTGACGTCATCAGAAGTAGTAAAGTCAACGGGTTCGAT 597
Query 590 AAACAACCTACATGATCAGTCAATGGTCGTCTCATCGCAACCAGGTCCATGGTGGTTCCC 649
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 AAACAACCTACATGATCAGTCAATGGTCGTCTCATCGCAACAAGGTCCATGGTGGTTCCC 657
Query 650 GGCGACTACAACGACGACTAATCAAAACGCTGCGTTTTGCTTTAGTTCAAGTAATACTAC 709
||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 GGCGAATACAACTACGACTAATCAAAACTCTGCGTTTTGCTTTAGTTCAAGTAATACTAC 717
Query 710 TCCAACGGTTTCAGACCAAATCGTATCTTTACTCTCTTCAATGTCCACGTCATCATCTCC 769
||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 718 ---AACGGTTTCAGACCAGATCGTATCTTTAATCTCTTCAATGTCTACGTCATCATCTCC 774
Query 770 GACACCAATGACTACAAACTTCAATCCTGCTCCAAACAACTGGGAACAACTCAACTACTG 829
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 775 GACACCAATGACTTCAAACTTCAGTCCTGCTCCAAACAACTGGGAACAACTCAACTACTG 834
Query 830 CAACACAGTTCCATCTCAGACCAACAGTATCTATAGTGCCTTCTTTGGTAATCAATACAC 889
||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 835 CAACACAGTACCAAGTCAGAGCAACAGTATCTACAGTGCCTTCTTTGGTAATCAATACAC 894
Query 890 AGAAGCTAGCCAAAACATGAACAATAGTAAT--ATTACTCCATTAGTACTGGATCATCAT 947
|||||||||||||| ||||||||||| |||| | || | || | | | ||||||||
Sbjct 895 AGAAGCTAGCCAAACCATGAACAATAATAATCCACTAGTAGATCAACA-TC-ATCATCAT 952
Query 948 CAAGACACGAAGTCATGGGCATCAGAGATTCTTCATTACACAGAACATAACCAAAGCTCA 1007
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 953 CAAGACATGAAGTCATGGGCATCAGAGATTCTTCATTACACAGAACACAACCAAAGCTCA 1012
Query 1008 GAAATTGGTT-TAGAAGCAGAAGTGAAGCCAGACATTGCCAAGTACTACTGGAGATCAGC 1066
|||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 GAAACTG-TTATAGAAGCAGAAGTGAAGCCAGACATTGCCAACTACTACTGGAGATCAGC 1071
Query 1067 ATCGTCCTCCTCATCACCAAACCTAGAAGCTGCAACATTACTACATGATGCTAACGTGGA 1126
||| || || || |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1072 ATCATCATCGTCGTCACCAAACCAAGAAGCTGCAACATTACTACACGATGCTAACGTGGA 1131
Query 1127 AGTGTACGGTAAAAATCTACAAAAACTTAATAGCATGGTGTTTGATCAAAGCCTTTAGAT 1186
|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1132 AGTGTACGGTAAAAATCTACAAAAGCTTAATAACATGGTGTTTGATCAGAGCCTTTAGAT 1191
Query 1187 TA--A-CATATGTTTTAGAGAGTTTCTATTTCTATATTCACATTCATAGACCTGAGTTTA 1243
|| | ||| |||| ||||||||||| |||| | |||||| |||||||||||||||||||
Sbjct 1192 TATTAACATGTGTTATAGAGAGTTTC-ATTT-TCTATTCATATTCATAGACCTGAGTTTA 1249
Query 1244 TTGATTGATCCATACATATATAATGTTCTGCTTGTGTGTAAAGTATGTATATGGTTTTTG 1303
||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||
Sbjct 1250 TTGATTGATCCATACAT-T-T---GTTATGCTTGTGTGTAAAGTATGTATATGGTTTTTG 1304
Query 1304 GTTTGTGTAAATTTTCTGTTCGTGTGAAtttttttGGTGCTAAGATGTA 1352
||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1305 ATTTATGTAAATTTTCTGCTCGAGTGAATTTTTTTGGTGCTAAGATGTA 1353
> AT3G08500.1 | Symbols: MYB83, AtMYB83 | myb domain protein 83
| chr3:2576794-2578246 REVERSE LENGTH=1370
Length=1370
Score = 106 bits (57), Expect = 6e-22
Identities = 234/315 (74%), Gaps = 30/315 (10%)
Strand=Plus/Plus
Query 152 GAAGCTACGAAAAGGCCTTTGGTCTCCCGAGGAAGATGAGAAACTTCTCAATTATATCA- 210
||||||| ||||||| |||||||| || || ||||||||||| || | || ||| ||
Sbjct 258 GAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGAT-AA-GATA-CAT 314
Query 211 CTAGAC--ATGGTCATGGCTGTTGGAGT-TCTGTCCCTA-AACTCGCAGGT-TTGCAAAG 265
| ||| |||| || || ||||||||| | || ||| || | || ||| || | |
Sbjct 315 GTTGACTAATGGACAAGGATGTTGGAGTGAC-ATCGCTAGAAAT-GCTGGTCTT-TTACG 371
Query 266 ATGTGG-AAAGAGTTGTAGACTTAGATGGATAAATTATTTGAGACCAGAT-TTAAAGAGA 323
||||| ||| |||||| | ||| | ||||| ||||| ||||| || ||| ||||| |
Sbjct 372 TTGTGGTAAA-AGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAA-CGT 429
Query 324 GGA-GCTT-TCT-CGCAAGACGAAGAAAGCTTAAT-CA-TTG-AGCTCCATGCTGCATTA 377
||| ||| ||| | || || || || | | | || ||| | ||||| | | ||
Sbjct 430 GGATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCA-TTCCAT--T-C-TT- 483
Query 378 GGCAACAGGTGGTCTCAAATCGCAACGCGG-TTACCGGGAAGAACAGACAACGAGATCAA 436
|| ||||||||||||||||| || || ||| || || || ||||||||||||||||||||
Sbjct 484 GGTAACAGGTGGTCTCAAATAGCTACTCGGCTT-CCAGGTAGAACAGACAACGAGATCAA 542
Query 437 AAACTTTTGGAACTC 451
|||||||||||||||
Sbjct 543 AAACTTTTGGAACTC 557
> AT4G05100.1 | Symbols: AtMYB74, MYB74 | myb domain protein 74
| chr4:2618454-2619887 FORWARD LENGTH=1175
Length=1175
Score = 84.2 bits (45), Expect = 3e-15
Identities = 215/293 (73%), Gaps = 28/293 (10%)
Strand=Plus/Plus
Query 171 TGGTCTCCCGAGGAAGATGAGAAA-CTTC-TCAATTATATCACTAGACATGGTCATGGCT 228
||| |||| ||||| ||| | ||| | || | ||||||||| || ||||||| ||||
Sbjct 155 TGGACTCCTGAGGAGGATCA-AAAGC-TCATTGATTATATCAATATACATGGTTATGGAA 212
Query 229 GTTGGAG--TTCTGTCCCTAA-ACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGAC 285
|||||| ||| |||| || | | || || || ||||||||||| ||||||||| | |
Sbjct 213 ATTGGAGAACTCT-TCCC-AAGAAT-GCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTC 269
Query 286 TTAGATGGATAAATTATTTGAGACCAGAT-TTAAAGAGAGG-AGCTT-TC--TCGCAAGA 340
| | |||| || ||| | |||||||| || ||| | || || || || | | ||||
Sbjct 270 TCCGGTGGACCAACTATCTCCGACCAGATATT-AAGCGTGGAAGATTCTCTTTTG-AAGA 327
Query 341 CGAAGAAAGCTTAATCATTGAGC-TC-CATGC-TGCATTAGGCAACAGGTGGTCT-CAAA 396
||||||| | || ||| | | || || || | || | || |||| ||||||| | |
Sbjct 328 AGAAGAAA-C--CATTATTCAACTTCACA-GCAT-CA-TGGGAAACAAGTGGTCTGC-GA 380
Query 397 TCGCAACGCGGTTACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAAC 449
| || | || || || |||||||||||||||||||||||||||| |||||||
Sbjct 381 TTGCGGCTCGTTTGCCTGGAAGAACAGACAACGAGATCAAAAACTATTGGAAC 433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5