BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489499
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26610.1 | Symbols: | D111/G-patch domain-containing protei... 1447 0.0
> AT5G26610.1 | Symbols: | D111/G-patch domain-containing protein
| chr5:9375183-9377125 FORWARD LENGTH=1106
Length=1106
Score = 1447 bits (783), Expect = 0.0
Identities = 882/931 (95%), Gaps = 2/931 (0%)
Strand=Plus/Plus
Query 172 AGGTTGATTGATATAGAGGAATGGATATTAGGCGGCGTGAAAGTAAGACGGAAGCAAGTA 231
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 47 AGGTTGATTGATGTAGAGGAATGGATATTAGCCGGCGTGAAAGTAAGACGGAAGCAAGTA 106
Query 232 GCAGAGAGAAACGGATTTATGAGAAGGATCAGATGAATCAAGAGTCTTTTATTGAGGCAT 291
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 107 GTAGAGAGAAACGGATTTATGAGAAAGATCAGATGAATCAAGAGTCTTTTATTGAGGGAT 166
Query 292 TGGCAGAGGAGTTTCGATTACCGATTACTCATAGGGTTACTGAAAATGTTGATTTGGAGG 351
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 167 TGGCAGAGGAGTTTCGGTTGCCAATTACTCATAGGGTTACTGAAAATGTTGATTTGGAGG 226
Query 352 ATGTGGAGCAAGCTTCTTTAGATACAAAGATATCGTCGTCGAACGTCGGGTTTCGTCTTC 411
|||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 227 ATGTGGAGCAAGCTTCGTTAGATGTAAAGATATCGTCGTCGAATGTCGGGTTTCGTCTTC 286
Query 412 TTCAGAAAATGGGTTGGAAAGGAAAAGGTCTTGGAAAGCAAGAACAAGGTATAACGGAGC 471
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 287 TTCAGAAAATGGGTTGGAAAGGAAAAGGTCTTGGAAAGCAAGAGCAAGGTATAACGGAGC 346
Query 472 CTATAAAGTCCGGTATCAGGGATCGAAGACTCGGTTTAGGAAAACAAGAAGAAGATGATT 531
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 347 CTATAAAGTCCGGTATAAGAGATCGAAGACTCGGTTTAGGGAAACAAGAAGAAGATGATT 406
Query 532 ATTTCACTGCAGAGGAAAATATCCAGCGGAAGAAACTTGATAGT-GAGATTGAAGAGACT 590
||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||
Sbjct 407 ATTTCACTGCAGAGGAAAACATCCAGCGGAAGAAACTTGATA-TCGAGATTGAGGAGACT 465
Query 591 GAGGAAATCACAAAGAAACGGGAGGTCCTAGCAGAACGTGAGCAGAAGATCCAGAGCGAT 650
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GAGGAAATCGCAAAGAAACGGGAGGTCCTAGCAGAACGTGAGCAGAAGATCCAGAGCGAT 525
Query 651 GTAAAAGAAATCCGTAAAGTCTTCTATTGTGAACTCTGCAGCAAACAGTATAGAACGGTG 710
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 526 GTTAAAGAAATCCGTAAAGTCTTCTATTGTGAACTATGCAGCAAACAGTATAGAACGGTG 585
Query 711 ATGGAATTTGAAGGTCACTTGAGCTCATACGATCACAACCATAAGAAGCGATTCAAAGAA 770
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATGGAGTTTGAAGGTCACTTGAGCTCATACGATCACAACCATAAGAAGCGATTCAAAGAA 645
Query 771 ATGAAAGAAATGCACGGTGCAAGCAGCCGCGATGACAGGAAGAAGCGAGAGCAGCAACGT 830
||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||||
Sbjct 646 ATGAAAGAAATGCACGGAGCAAGCGGCCGCGATGAGAGGAAGAAACGAGAGCAGCAACGT 705
Query 831 CAGGAGAGGGAGATGACTAAAATGGCCGATGCTCGTAAACAACAGCAGATGCAACAGAAC 890
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
Sbjct 706 CAAGAGAGGGAGATGACTAAAATGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGC 765
Query 891 CAGCAAGAAATCCCAGAGAATGTCCCGGTTTCTACACCGGCTAAGACCATGGTTGCACCA 950
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 766 CAGCAAGAAGTCCCAGAGAATGTCCCGGTTTCTGCACCGGCTAAGACCACGGTTGCACCA 825
Query 951 CTTGCTGTCCAAGATCAGCGTAAAACATTGAAGTTTGGCTTTTCTTCTAAAAGCGGCAGT 1010
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
Sbjct 826 CTTGCTGTCCAAGATCAGCGAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATT 885
Query 1011 ATATCAAAGAGCCAACCCATGAGCAGCACCAAGAAACCAAAAGTAGCAATCGCATCAGTT 1070
||||||||||||||||||| ||||||| |||||| || |||||||||||||| || |||
Sbjct 886 ATATCAAAGAGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTT 945
Query 1071 TTCGGCAACGATAGCGACGAAGAATAAGTTT 1101
||||| ||||||||||||||||| ||| |||
Sbjct 946 TTCGGGAACGATAGCGACGAAGATTAACTTT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5