BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489502
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26600.2 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 2191 0.0
> AT5G26600.2 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr5:9377402-9379797 FORWARD
LENGTH=2009
Length=2009
Score = 2191 bits (1186), Expect = 0.0
Identities = 1352/1430 (95%), Gaps = 19/1430 (1%)
Strand=Plus/Plus
Query 97 CCACCAACGGAAACGTCGAATCATCATCGGTTTCCGATTTCGTCAAACGACCGAAAATCT 156
|||||||||||| ||||| | ||||||||||||||||||||||||||| || |||||||
Sbjct 145 CCACCAACGGAACCGTCG-A--ATCATCGGTTTCCGATTTCGTCAAACGTCCCAAAATCT 201
Query 157 CTCCTCAGAATTACATATCTTGTTCCGAGATCGAGTCAGAGTTTTCTCATCATGATCCAG 216
||| || |||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 202 CTCATCCGAATTACATATCAAGTTCCGAGATCGAATCAGAGTTTTCTCATCACGATCCAG 261
Query 217 AATTT-GCTAGAATCAACAACGGTAGCTTTGGTTGTTGTCCATCATCAATCCTCGCTTTA 275
|||| || ||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 262 -ATTTCGCAAGAATCAACAACGGTAGTTTTGGTTGTTGTCCGTCATCAATCCTAGCTTTA 320
Query 276 CAACGAGATTGGCAGCTCCGGTTCCTTCGTCAACCGGATCGATTCTATTTCGACGAACTC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CAACGAGATTGGCAGCTCCGGTTCCTTCGTCAACCGGATCGATTCTATTTCGACGAACTC 380
Query 336 AAACCGAAAATCTCCGATTCTAGATCTGTAATCAAACGGTTAATCAACGCCGATCACGAC 395
||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 381 AAACCAAAAATCTCCGATTCTAGATCTGTAATCAAACGGTTAATAAACGCCGAGCATGAC 440
Query 396 GATGAAGTCTCAATCGTTGATAACGCCACAACTGCAGCTGCAATCGTTCTTCAACAAACC 455
||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 441 GATGAAGTCTCGATCGTCGATAACGCAACAACCGCAGCTGCAATCGTTCTTCAACAAACC 500
Query 456 GCTTGGGCTTTTCGTGAAGGAAGGTTCGATAAAGGCGACGCGGTGGTTATGCTTCATTAC 515
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 501 GCTTGGGCTTTTCGTGAAGGTCGGTTCGATAAAGGCGACGCGGTGGTTATGCTTCATTAC 560
Query 516 GCTTATGGCTCTGTGAAGAAATCTGTTGAAGCGTATGTTACACGCTCCGGTGGACACGTC 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GCTTATGGCTCTGTGAAGAAATCTGTTGAAGCGTATGTTACACGCTCCGGTGGACACGTC 620
Query 576 ATCGAGGTACAGTTACCTTTTCCGGTTATCTCGGCGGATGAAATTATTGACCGGTTTAGG 635
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 621 ACCGAGGTACAGTTACCTTTTCCGGTTATTTCGGCGGATGAGATTATTGACCGGTTTAGG 680
Query 636 ATTGGTTTAGAGTCGGGTAAGGCGAATGGTAGGAGAGTTAGGTTAGCTTTGATTGATCAT 695
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 681 ATTGGTTTAGAGTCTGGTAAAGCGAATGGTAGGAGAGTTAGGTTAGCTTTGATTGATCAT 740
Query 696 GTGACTTCTATGCCAAGTGTTGTGATTCCTATTAAAGAGCTTGTGAAGATTTGTAGAAGA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTGACTTCTATGCCAAGTGTTGTGATTCCTATTAAAGAGCTTGTGAAGATTTGTAGAAGA 800
Query 756 GAAGGTGTTGACCAAGTTTTTGTTGATGCTGCTCATGGGATTGGTTGTGTTGATGTTGAT 815
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 801 GAAGGTGTTGACCAAGTTTTTGTTGATGCTGCTCATGGGATAGGTTGTGTTGATGTTGAT 860
Query 816 ATGAAGGAGATTGGTGCTGATTTCTATACGAGTAATCTTCATAAGTGGTTTTTCGCACCG 875
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 861 ATGAAGGAGATTGGTGCTGATTTCTATACTAGTAATCTTCATAAGTGGTTTTTCGCACCG 920
Query 876 CCTTCTGTTGCTTTCTTGTATTGTAGGAAATCGAGTAATGGTGGTGGTGGTGTTGCGGAT 935
|||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 921 CCTTCTGTTGCTTTCTTGTATTGTAGGAAATCGAGTAATGGTGGTG-T--TG---CGGAT 974
Query 936 TTGCATCATCCTGTTGTGTCGAATGAGTATGGGAACGGTTTGGCGGTTGAGAGTTCTTGG 995
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 975 TTGCATCATCCCGTTGTTTCGAATGAGTATGGGAACGGTTTGGCGGTTGAGAGTTCGTGG 1034
Query 996 GTTGGAACTCGAGATTATAGTGCTCAGTTGGTGGTTCCTTCGATTTTGGAGTTTGTGAAT 1055
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1035 GTTGGAACTAGAGATTATAGTGCTCAGTTGGTGGTTCCTTCGATATTGGAGTTTGTAAAT 1094
Query 1056 CGGTTTGAAGGCGGGATTGATGGTATTAAGAAGAGGAATCATGAGTCTGTGGTTGAGATG 1115
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1095 CGGTTTGAAGGCGGGATTGATGGTATTAAGAAGAGGAATCATGAGTCTGTTGTTGAGATG 1154
Query 1116 GGTCATATGTTGGTTAAGTCTTGGGGGACTCAGCTCGGTTGTCCGCCTGAGATGTGCGCG 1175
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1155 GGTCAAATGTTGGTTAAGTCTTGGGGGACTCAGCTCGGTTGTCCCCCTGAGATGTGTGCG 1214
Query 1176 AGTATGATCATGGTCGGGTTGCCGGCGTGTTTAGGAGTGTCGAGTGATTCGGATGTTTTG 1235
|||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1215 AGTATGATCATGGTTGGGTTGCCAGTGTGTTTAGGAGTGTCGAGTGAGTCGGATGTTTTG 1274
Query 1236 AAGCTTAGAACGTTTTTGAGAGAAAAGTTCAGAATTGAAATCCCAATCTACTTTAGGCCA 1295
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AAGCTTAGAACGTTTTTAAGAGAAAAGTTCAGAATTGAAATCCCAATCTACTTTAGGCCA 1334
Query 1296 CCTGGGGATGGAGAGATTGATCCGATCACGGGATATGTGCGTATTTCTTTTCAAGTTTAC 1355
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 CCAGGGGATGGAGAGATTGATCCGATCACGGGATATGTGCGTATTTCTTTTCAAGTTTAC 1394
Query 1356 AACAAACCTGAGGATTATCATAGGCTCAGGGACGCAATAAACGAACTTGTGAGAGATGGG 1415
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1395 AACAAACCTGAGGATTATCATAGGCTCAGGGACGCAATAAACGGGCTTGTTAGAGATGGG 1454
Query 1416 TTCAGATGCGCATCTCTATCTAGTTGA----GG-CATCAAGCTTTTCGGGCGAATGAATC 1470
|||| |||| | ||||||||| ||||| || ||| ||||||||| ||||||||||||
Sbjct 1455 TTCAAATGCACGTCTCTATCTTGTTGAATAAGGGCATAAAGCTTTTCAGGCGAATGAATC 1514
Query 1471 ATCCTA--GAA-GTTATCATGGTTTAGGTACCATGGAGCTTCATGAGATT 1517
|| | ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1515 ATGAGAAAGAAAGTTATCATGGTTTAGGTACCATGGAGCTTTATGAGATT 1564
Score = 183 bits (99), Expect = 4e-45
Identities = 189/227 (83%), Gaps = 27/227 (12%)
Strand=Plus/Plus
Query 1518 AACTTCTTTTACAGTAATGATGTATGAGAAAACTAAGTTTTCTTCTGTTTCCATTG---- 1573
|||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1599 AACTTCTTATACAGTAATGATGTATGAGAAAACTAAGTTTTCTTCTATTTCCGTTGCTCG 1658
Query 1574 AATCGCCTGTTCAAAATCTCCCATTTACATAACGTTAGCAGGTCGGTAATAAAGCACTAT 1633
||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
Sbjct 1659 AATCGCCTGTTCAAAATTTCCCATTTACATAACCTTAGCAGGTC--TAATAAAGCACTCT 1716
Query 1634 AGTTAGTGTTGTTGGTT-TCGTAATTTGGTATCACGGTCTTAAAAATTCCCTAATTTGTT 1692
||| ||||||||| || |||||||| ||| | | ||||| ||| ||||||||||
Sbjct 1717 AGTCCGTGTTGTTG-TTCTCGTAATT-GGT--C----T-TTAAA--TTCTCTAATTTGTT 1765
Query 1693 ACG---TGT-A-GT--ATGATATAATTCAAATGAAA-TCATTTGGTT 1731
||| ||| | || |||||||||||| |||||| | ||||||||
Sbjct 1766 ACGACGTGTCACGTGTATGATATAATTCGCATGAAACT-ATTTGGTT 1811
Score = 100 bits (54), Expect = 4e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 23 TCAATCAATGGCGTCGTCTCTATCTCCACCGGAAAAAGCTTCGTATCACCACCGTCA 79
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 47 TCAATCAATGGCGTCGTCTCTATCTCCACCGGAAGAAGCTTCGTATCACCACCGTCA 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5