BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489512

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26790.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   383    8e-106


> AT5G26790.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G06475.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:9423092-9423611 FORWARD LENGTH=520
Length=520

 Score =  383 bits (207),  Expect = 8e-106
 Identities = 248/268 (93%), Gaps = 2/268 (1%)
 Strand=Plus/Plus

Query  1    ACACAAACACACTATAATCCACTTCAATGCCGTCATCTATCCGGTGGTGGTGGCCGATCC  60
            ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  34   ACACACACACACTAGAATCCACTTCAATGCCGTCATCTATCCGCTGGTGGTGGCCGATCC  93

Query  61   ATTTCACTTCATCTGGATCTGCACCGAGGTGGCTCAGTTGGCGTCGACCGGAGCTGAGTT  120
            ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct  94   ATTTCACTTCATCTGGATCTGTACCAAGGTGGCTGAGTTGGCGTCGACCGGAGCTGAGTT  153

Query  121  TATTGTCTGTGGTGTTCGACGACGTTGTCTGGAAAGTAGTGACTGCGTTCGAGTCCGTGG  180
            |||||||||||||| ||||||||||||| |||||||| || || ||||||||||| ||||
Sbjct  154  TATTGTCTGTGGTGGTCGACGACGTTGTGTGGAAAGTTGTTACGGCGTTCGAGTCGGTGG  213

Query  181  CGTTGGTCTCCATGCTCTGTTTCTTCTTCCTCTTCTGTGGCTGCACCGTCTAGttttttt  240
            | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |
Sbjct  214  CCTTGGTCTCCATGCTCTGTTTCTTCTTCCTCTTTTGTGGCTGCACCGTCTAGTTTTGAT  273

Query  241  tttCACATAATCTCGTTAAGTGtttttt  268
            ||| || |||||||||||||  ||||||
Sbjct  274  TTT-ACTTAATCTCGTTAAGA-TTTTTT  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19805493106


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5