BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489513
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26810.1 | Symbols: | Pectin lyase-like superfamily protein... 1288 0.0
> AT5G26810.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:9430952-9432969 FORWARD LENGTH=882
Length=882
Score = 1288 bits (697), Expect = 0.0
Identities = 824/885 (93%), Gaps = 10/885 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTGTTTGTTCATCTTCATAGCTTTGCTTCTGAGTTTTTGTCTTAAG-TCCTTGAC 59
||| ||||||||||||||||||||||||||||||| |||| |||| || | | ||||
Sbjct 1 ATGCCTTGTTTGTTCATCTTCATAGCTTTGCTTCTAAGTTCTTGTATT-GGAACGTTGAA 59
Query 60 AGCCCTTGATCAGACTTGTGGCAACAAAGTCGTGAACACAATCGTCGTCGACCAAACCGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AGCCCTTGATCAGACTTGTGGCAACAAAGTCGTGAACACAATCGTCGTCGACCAAGCCGG 119
Query 120 TTCAGGAGAGGGACAAAGAGTCACGACCATCATGTACAATGGTCACGAAGCCACTGACGT 179
|||||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||||||
Sbjct 120 TTCAGGAGAGGGACAAAGAGTCACCACCATCACGTATAATGGTCATGCAGCCACTGACGT 179
Query 180 CAGCTCAACTTTCACTTCATATCCACCCCATATTGTCGTCCGAAACTTATCAATCATG-- 237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CAGCTCAACTTTCACTTCATATCCATCCCATATTGTCGTCCGAAACTTATCAATCATGAA 239
Query 238 -ACGTATTATCCTTTGAATAGTCTAACGATGAAAGCAAACGATATGAGTTGGAAAATAAA 296
|| ||| ||| ||||| ||||||||| | |||||||||| |||||||||| | |||||
Sbjct 240 CACTTATAATCGTTTGACTAGTCTAAC--T-AAAGCAAACGGTATGAGTTGGGATATAAA 296
Query 297 GCCGGCGGTTGCGATTTCGGTTTATGGCGATAAATCAGCGTTTTACAACTGCGATTTCGT 356
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 297 GCCAGCGGTTGCGATTTCGGTTTATGGCGATAAATCAGCGTTTTACAACTGTGATTTCTT 356
Query 357 GGGGTTACAAGATACAGTGTGGGATAATCATGGCAAACATCACTTCAAAAATTGTTACAT 416
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 357 GGGGTTGCAAGATACAGTGTGGGATAATCTTGGCAGACATCACTTCAAAAATTGTTACAT 416
Query 417 CCAAGGTGCTATCGATTTCATTTTTGGAAGTGGCCAATCTATTTATGAGGACTGTCATAT 476
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 417 CGAAGGTGCTATCGATTTCATTTTTGGAAGTGGCCAATCTGTTTACGAGGACTGTCATAT 476
Query 477 AAACGCAACGGCAGGAGCATTGGCATCAGAAGTGGCGGTTGGATACATAACGGCTCAAGG 536
|||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||
Sbjct 477 AAACGCAACGGCAGGAGCATTGGCATCAAAAGTGTCGTTTGGGTACATAACGGCTCAAGG 536
Query 537 AAGAAGCAGCGTTTCGGACCCAAGTGGCTTCGTGTTCCTACGAGGTAGTGTTTCAGGGA- 595
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 AAGAAGTAGCGATTCGGACCCAAGTGGGTTCGTGTTCCTACGAGGTAGTGTTTCAGGGAG 596
Query 596 CTACCAGTGTCTATCTTGGACGAGCCTATGGTCCATTCAGCCGAGTCATTTTCATCCAAA 655
| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 597 C-ACCAGTGTCTATCTTGGACGAGCCTATGGTCCATTCAGTCGAGTGATATTCATCCAAA 655
Query 656 CCGATCTCTCTTCCGTCGTCCACCCTAAGGGTTGGGACCCTTGGCACTATGGTAGATACG 715
||||||||||||||||||| |||||| |||||||| || |||||||||||||| ||||||
Sbjct 656 CCGATCTCTCTTCCGTCGTGCACCCTGAGGGTTGGTACTCTTGGCACTATGGTGGATACG 715
Query 716 AGATGAGTTTCACGTATGCAGAAGTCGAGTGTAAAGGAGCAGGATCGGATATTTCAGGAA 775
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 716 AGATGAGTTTCACGTATGCAGAAGTTGAGTGTAAAGGAGCAGGATCGGATATGTCACGAA 775
Query 776 GAGTTCCTTGGAGTGACAAACTTCATTCTTTTTACACTAAACAACAATTCTCTATCTCTA 835
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAGTTCCTTGGATTGATAAACTTCATTCTTTTTACACTAAACAACAATTCTCTATCTCTA 835
Query 836 ATTTCATTGACCAAGATCAATGGATCTCTAATATTCCTCGTTTTT 880
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATTTCATTGACCAAGATCAATGGATCTCTAATATTCCTCGTTTTT 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42950195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5