BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489520
Length=3332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 4867 0.0
> AT5G26910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G58650.1);
Has 1322 Blast hits to 684 proteins in 162 species: Archae
- 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155;
Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).
| chr5:9465929-9470403 REVERSE LENGTH=3404
Length=3404
Score = 4867 bits (2635), Expect = 0.0
Identities = 3136/3368 (93%), Gaps = 73/3368 (2%)
Strand=Plus/Plus
Query 1 GGAGTGAGAGACTGGGAAAATTCAAAACACTCTGTTGTTtctctctctcctctctcactc 60
||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct 1 GGAGTGAGAAACTGGGAAAATTCAAAACACTC---TGTTTCTCTCTCT-C-CTCTCACTC 55
Query 61 ttcgcctctcttctctcGTCACATCAATCCACACTGTGAAGTATCTGtttttttcttctt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 56 TTCG-TTCTCTTCTCTCGTCACATCAATCCACACTGTGAAGTATCTGTTTTTTT-TT-TT 112
Query 121 ttttAATTTCTCAAGTTCTCTGCTGCAACTATTGGTC--TCTGTCT-TCCCT--A-CCCA 174
||||| ||| |||||||||||||||| |||||||||| ||| ||| | ||| | ||||
Sbjct 113 TTTTAGTTTTTCAAGTTCTCTGCTGCTACTATTGGTCTGTCT-TCTCTACCTAAATCCCA 171
Query 175 AATCCCAAATCTTTAAAT-T-CTA--ATCTAACCTTACTTCGTCCTGGATTGATTTAACC 230
||||||||||| |||| | || |||||||||||||||||||| |||||||||||
Sbjct 172 AATCCCAAATC-CCAAATCTAGTATCATCTAACCTTACTTCGTCCTCTTTTGATTTAACC 230
Query 231 T-TTTCTCTGATCTGACCCATTTCTCAAGACTCTCTCTTTCTTCTAAGATTCATTGGTGT 289
| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 231 TCTTTCTCTGATCTGACCCATTTCTCAAGAATCTCTCTTTCTTCTTA-ATTCATTGGTGT 289
Query 290 TTTAACCTTTTCATCGATTCCAATTCTCAATTGTTGTCTGTTTGAGGAACACAAGA--CC 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 290 TTTAACCTTTTCATCGATTCCAATTCTCAATTGTTGTCTGTTTGAGGAACACAAGACCCC 349
Query 348 CCC-TCCCCTTGTGTTGGTCGCTTCTAGGGCTAGATCTTCTCGTAACGCTAAAGTTTAGG 406
||| |||||| |||||| ||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 350 CCCTTCCCCTAGTGTTGCTCGCTTCTAGGGCTAGATCTTCTGGGAACGCGAAAGTTTAGG 409
Query 407 TTTTTAATCAATTTTTGTGTGTGAATAGTCTGCAGCATTTCTGGGTTTTGGTTCCCGTGG 466
| ||||||| | ||||||| || || |||| |||||||||||||||||| |||||||| |
Sbjct 410 TCTTTAATCGA-TTTTGTGCGTAAACAGTCCGCAGCATTTCTGGGTTTTTGTTCCCGTTG 468
Query 467 CTGCATTTTGCT-GTAAACGTGTCGAATTC--G-A-TTGA----TTTCTCCACAAGGGTC 517
|| ||||||| | || |||||||||||||| | | |||| ||||| ||||||||||
Sbjct 469 CTACATTTTGTTGGT-AACGTGTCGAATTCGAGAATTTGATTGGTTTCTTCACAAGGGTC 527
Query 518 TCTGGAATTAACCC-AAATTGGAGTGAGCTCATAAGTTAAAGTTGAGATCTTTGTAACCG 576
|||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 528 TCTGGAGTTAACCCAAAATTGGAATGAGCTCATAAGTTAAAGTTGAGGTCTTTGTAACCT 587
Query 577 ATAGGTAAAATTAAAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGGTTTTTAAAT 636
||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TTAGATGAACTAAAAATGGAGGTTGTTGAGAGGAAACGATCCAGAGGAGGGTTTTTAAAT 647
Query 637 TTATTTGATTGGCATGGAAAACCCCGGAAGAAGCTCTTCTCCGGCAGCAGCTC-GCAACT 695
||||||||||||||||||||| |||| |||||||||||||||||||||| ||| | ||||
Sbjct 648 TTATTTGATTGGCATGGAAAATCCCGCAAGAAGCTCTTCTCCGGCAGCACCTCAG-AACT 706
Query 696 CTCAGAATCAAAGCAGA-CAAAACAGACTGCTCAAAACCTCTTGAAGGCGAGGGTTTCTC 754
||||| ||| | | |||| ||| |||| ||||||||||||||| ||||||||||||
Sbjct 707 CTCAG-----AAG-A-ATCAAAGCAGCCTGCACAAAACCTCTTGAAGTCGAGGGTTTCTC 759
Query 755 TTATTGAGGTTGATGAGATTGGAAAAAGTTCAAGTTACAACCCGAGAAGTGACTCGAGCT 814
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 760 TTATTGAGGTTGATGAGATTGGAAAGAGTTCAAGTAACAACCAGAGAAGTGACTCGAGCT 819
Query 815 GTTGTGCATCTTCTGTTACCAGTGATGATGGACAGGGAACAAGAGCCCCGAGTGTGGTTG 874
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 820 GTTGTGCATCTTCAGTAACCAGTGATGATGGACAGGGGACAAGAGCCCCGAGTGTGGTTG 879
Query 875 CGAGGCTTATGGGTTTAGAGTCTCTACCGGTACCAAATTTCCAGGAACCTCGACTTAATC 934
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 880 CGAGGCTTATGGGTTTAGAGTCTCTACCGGTACCAAATGTCCAGGAACCTCGACTTAATC 939
Query 935 CCGATCTTGATCCGTTCTT-CGTTAGACCTTCACGAAACACTAATAGATGGGATGCATAT 993
||||||||||||||||||| | | |||||||||| ||||||||| |||||||||||||||
Sbjct 940 CCGATCTTGATCCGTTCTTAC-TCAGACCTTCACAAAACACTAACAGATGGGATGCATAT 998
Query 994 GAGAATCTTGGTTATGTAAATCTCCGTAGTGACTATAATGGTATTTCCTGGGACCATTTG 1053
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 999 GAGAATCTTGGTTATGTAAATCTCCGTAGTGACTATGATGGTATTTCTTGGGACCATTTG 1058
Query 1054 GATTCAAGAACGAATAATGGGCGCAACCAACCGATTGAACGGTTTCAATCTGAGACTTTT 1113
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1059 GATTCTAGAACGAATAATGGGCGCAACCAACCGATTGAACGGTTTCAGTCTGAGACTTTT 1118
Query 1114 CCTCCCAGGTCAGCTACACCGATATGTGTTACCAACAATAGACACCTGTCTCCTATCCGT 1173
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CCTCCCAGGTCAGCTAAACCGATATGTGTTACCAACAATAGACACCTGTCTCCTATCCGG 1178
Query 1174 AGTCCTGGATTTGTCCCGTCCAGGAACCCTATTTATGTAATGGAAGCGGCTTCAAGAATG 1233
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1179 AGTCCTGGGTTTGTCCCATCCAGGAACCCTATTTATGTTATGGAAGCGGCTTCAAGAATG 1238
Query 1234 ATTGAACCAAGACCTAGGATGGTTGCTAGAACACGGTTTTCACCATCTAATTCTTCTTCA 1293
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1239 ATTGAACCAAGTCCTAGGATGGTTGCTAGAACACGGTTTTCGCCATCGAATTCTCCTTCA 1298
Query 1294 TCAGTTCCTATGAGGATTCAAGATTTAAGAGAGAAATTAGAAGCTGCACAGAAAGAGTCT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1299 TCAGTTCCTATGAGGATTCAAGATTTAAGAGAGAAATTAGAAGCTGCACAGAAAGTGTCT 1358
Query 1354 AGCCGTCAAATCTCTAATGATACCTTCAACCTTAAGTACCCAAGTGGAAAGCACAACGAG 1413
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 AGCCGTCAAAACTCCAATGATACCTTCAACCTTAAGTACCCAAGTGGAAAGCACAACGAG 1418
Query 1414 AAGAGAACCGCAACATCACTCATGACACCGTCAACTAGTAAGTTCATGGGAAAAAGCAGT 1473
||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1419 AAGAGAATTACAACATCACTCACGACACCGTCAACTAGTAAGTTCATGGGGAAAAGCAGT 1478
Query 1474 TCTGATGGTTTGAAGGGTAAAGTGAAGCCATCTTATGTATCAACACAAGCGAAGACCAGT 1533
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||
Sbjct 1479 ACTGATGGTTTGAAGGGTAAAGTGAAGCCATCTTATGTATCCGCACAAGCAAAGGCCGGT 1538
Query 1534 ACAACGCCCTTAAGTGTCACCAGAAACTCTGCAAACCAAAAGGAGAAGGCAGAAGCTAAA 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1539 ACAACGCCCTTAAGTGTCACCAGAAACTCTGCAAACCAAAAGGAGAAGGCAGACGCTAAA 1598
Query 1594 AAATGCGTAGCCAAAAGCCAGAATGGTCTCAGAGGAGCTCCCATTAACTTGGGAAAG--- 1650
|| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 1599 AAGTGCGTAGTCAAAAGCCAGAATGCTCTCAGAGGAGCTCCCATTAGCATGGGAAAGAAT 1658
Query 1651 A-G--TAAGCAGAATAACCACAAACAGAACTGCAGAGACAACCAACCTTCAATGACCTCT 1707
| | ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1659 ATGTTTAAGCAGAATAACCAGAAACAGAACTGCAGAGACAACCAACCTTCGATGACCTCT 1718
Query 1708 GTTTTAAACCAAAAAGGCAGCAAAGTAAATAACAAAGTTGTAAACAAGGTTCCAGTGGAA 1767
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 GTTTTGAACCAAAAAAGCAGCAAAGTAAATAACAAAGTTGTAAACAAGGTTCCAGTGGAA 1778
Query 1768 AGTGGATCGATATCAAAGCAGTCAGGTTTAACAACGGCTTCGACGGAAAAGAATACTTCT 1827
|||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||
Sbjct 1779 AGTGGATCGATATCAAAGCAGTTGGGTTTATCAACGGCCTCGGCGGAAAAGAATACTTCT 1838
Query 1828 TTATCTTTGTCACGCAAAAAGACTCTTCCCCGGAGCAAAAGGCTCCCAAATGGGATGCAA 1887
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1839 TTATCTTTGTCACGCAAAAAGACTCTTCCCCGGAGCAAAAAGCTCCCAAATGGGATGCAA 1898
Query 1888 AAATCTGGAATCTCCGATGATAAACGGACCAAAAGAAGTGAGAATTTGATTAAATGTAAC 1947
|||||||||||||| |||||||||||||||||||| || || ||| |||| |||||||||
Sbjct 1899 AAATCTGGAATCTCTGATGATAAACGGACCAAAAGGAGCGAAAATATGATCAAATGTAAC 1958
Query 1948 ATCACCATTGATGGTGGCTTGAACAAAGGCAAAGATGATCGGAAAAAGGAAATGGATGTG 2007
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1959 ATCACCATTGATGGTGGCTTGAACAAAGGTAAAGATGATCGGAAAAAGGAAATGGATGTG 2018
Query 2008 ATTTCATTCACATTCTCATCCCCCATCAAAGGTTTATCATCTGATTCCCTATCCTCCACA 2067
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 2019 ATTTCATTCACATTCTCATCTCCCATCAAAGGTTTATCTTCTGATTCATTATCCTCTACT 2078
Query 2068 CAAGGAATTGGTCAAGACACAGACTCTGCAGTTAGTTTCAGTATGATTGGCGGCGATTCC 2127
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2079 CAAGGAATTGGTCAAGACACAGACTCTGCAGTTAGTTTCA--AT-ATTGGCGGCGATTCC 2135
Query 2128 TTAAATGTTCTGTTGGAGCAAAAGCTCAGAGAGCTGACTTCTAAGCTTGAGTCTTCTAGC 2187
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 TTAAATGCTCTGTTGGAGCAAAAGCTCAGAGAGCTGACTTCTAAGCTTGAGTCTTCTAGC 2195
Query 2188 TGTAGCCTGACCCAAGAAGAGTCTTCATGTTCCATTCCAAAGGATGAGGTGAACGGGATG 2247
||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||
Sbjct 2196 TGTAGCCTGACCCAAGAAGAGCCTTCATATTCCATTCCAATGGATGAGATGAACGGGATG 2255
Query 2248 ATTTCATTTTCATCAGAGTATGAAAAGTCGACCCAAAACGGTCTAG-ATAAAGTTTTATC 2306
||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||
Sbjct 2256 ATTTCATTTTCATCAGAATATGAAAAGTCAACCCAAAACGGTCT-GCGTAAAGTTTTATC 2314
Query 2307 GGAGAGTGAATCTGTTTCTGACTGCACCTCATTCTATGACAAACAAAAATTTCAGATACA 2366
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2315 AGAGAGTGAATCTGTTTCTGACTGCACCTCATTCTATGACAAACAAAAATTCCAGATACA 2374
Query 2367 AGCAGAAGAGCACGAAGTTAGCAGCATTAGCACTGTGACAGAAGCAGATGATCTCAGAAG 2426
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2375 AGCAGAAGAGCACGAAGTTAGCAGCATTAGCACTGTGACGGAAGCAGATGATCTAAGAAG 2434
Query 2427 CTCCTGCAGCAAGGGTTTCTCAGATTGCAGACAGACCACAGAATATGGGACAATACAGTC 2486
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2435 CTCTTGCAGCAAGGGTTTCTCAGATTGCAGACAGACCGCAGAATATGGGACAATACAGTC 2494
Query 2487 CTCATCAGATCAAAAACTCACCTGGGTTTCATTAAATGAGTCGCACCAAGCACAAGACGA 2546
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2495 CTCATCAGATCAAGAACTCACCTGGGTTTCATTAAATGAGTCGCACCAAGCACAAGACGA 2554
Query 2547 GTCCGAGCTCTCAGAATCTGTAATAACACTGAGTTACTCAGAAGCCGAAGAAAGGCTTGA 2606
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2555 GTCCGAGCTCTCAGAATCTGTGGTAACACTGAGTTACTCAGAAGCCGAAGAAAGGCTCGA 2614
Query 2607 CTGGGAGCTT-GAGTACATATCCGAGATCCTCGGGTCTGACCAACTGATGGTGAAAGAAT 2665
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2615 CTGGGAG-TTCGAGTACATATCCGAGATCCTCGGGTCTGACCAACTGATGGTGAAAGAAT 2673
Query 2666 TTGCTCTGGGGATGGCCACTGACGTATTACCTGCGAGCCTCTTTGATGAAATGGAAGGCC 2725
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 ATGCTTTGGGGATGGCCACTGACGTATTACCTGCGAGCCTCTTTGATGAAATGGAAGGCC 2733
Query 2726 GAGGAGAAGCAACAGCAGCCAAAATCAAGAGAAAGACACTGTTTGATTTTGTCAATAATT 2785
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2734 GAGGAGAAGTAACAGCAGCCAAAATCAAGAGAAAGACACTGTTTGATTTTGTGAATAAGT 2793
Query 2786 GCTTAGCGCTCAAATGCGAG-AGGATGTTTATGGGTAGCTGCAGAGGGCTATTGGGCAAA 2844
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 2794 GCTTAGCGCTCAGATGCGAGCA-GATGTTTATGGGTAGCTGCAGAGGGCTATTGGGGAAA 2852
Query 2845 GGCGAGCTTTTGTTTGAACAAAGAGATTGGTTAGCagaagaactgaacagagagattcat 2904
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2853 GGCGGGTTTTTGTTTGAGCAAAGAGATTGGTTAGCAGAAGAACTGAACAGAGAGATTCAT 2912
Query 2905 gggttgaagaagatgagagagatgatgatggatgagCTTGTTGACAAAGAAATGAGCAGT 2964
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2913 GGGTTGAAGAAGATGAGAGAGATGATGATGGACGAGCTTGTTGACAAAGAGATGAGCAGT 2972
Query 2965 TTCGAAGGGAGGTGGCTTGATTTCGAGAGAGAGACATATGAAGAAGGCATTGACATTGAG 3024
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2973 TTCGAAGGGAGATGGCTTGATTTCGAGAGAGAGACGTATGAAGAAGGCATTGACATTGAG 3032
Query 3025 GGAGAGATAGTCTCTACATTGGTTGATGATTTAGTTAATGATCTTGTCTCAGGTACTCAA 3084
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3033 GGAGAGATAGTCTCTACGTTGGTAGATGATTTAGTTAATGATCTTGTCTCAGGTACTCAA 3092
Query 3085 AGAAGAACATTGAGGCAAAGGGAAGGGCTAGTTTGAATTTTCTACTTTAGTTGAGCCTGA 3144
||||||||||||||||||||||||||| |||||| || |||||||||||||| |
Sbjct 3093 AGAAGAACATTGAGGCAAAGGGAAGGGGTAGTTT-------CTGCTTTAGTTGAGCCTCA 3145
Query 3145 TCTTCTCTCGGCATTCTAGAAGCTTCTTCTAACAGTTTCTCTGACATGAGAATTGAGATG 3204
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 3146 TCTTCTCTCGGCATTCTAGATGCTTCTTCTAATAGTTTCTCTGACATGAGAATTGAGATA 3205
Query 3205 AAGTTAAAGTAGCCAATATCGAGGAGCATTTTTCTCACAATGTAATTCACGAGCATTCCT 3264
|||| ||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 3206 AAGTGAAAGTAGCCAACATCGAGGAGAATTTT-CTCACAATGTAATTCACGAGAATTCCT 3264
Query 3265 TCTTTTATGGTTTCTACTTCCATTGAAAATGCAAATAATATGATCATTTTCCTTCATTCG 3324
| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 3265 TATTTTATG-TTTCTACTTCTATTGAAAATGCAAATAATATGATCATTTTCTTTCATTCG 3323
Query 3325 TTCTGATG 3332
||||||||
Sbjct 3324 TTCTGATG 3331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165801746615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5