BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489522
Length=2044
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26920.1 | Symbols: CBP60G | Cam-binding protein 60-like G |... 2728 0.0
> AT5G26920.1 | Symbols: CBP60G | Cam-binding protein 60-like G
| chr5:9475747-9478721 FORWARD LENGTH=2078
Length=2078
Score = 2728 bits (1477), Expect = 0.0
Identities = 1877/2065 (91%), Gaps = 48/2065 (2%)
Strand=Plus/Plus
Query 1 ctctctctctctatctctctctcACACACAGTGttttttcttttaagataacataaatct 60
||||||||||||| || ||||||||||| || |||||||||||||||| || | || |||
Sbjct 7 CTCTCTCTCTCTACCTTTCTCTCACACAAAGAGTTTTTTCTTTTAAGACAA-A-AACTCT 64
Query 61 ttcaaggttttaaatcttttttaagaaaa-tctctaaaaCTAAAAGTGATCAATGAAGAT 119
|||||||||||||||| ||| || |||| |||||||| |||||||||||||||||||||
Sbjct 65 TTCAAGGTTTTAAATC--TTTGAA-AAAATTCTCTAAACCTAAAAGTGATCAATGAAGAT 121
Query 120 TCGAAACAGTCCTACTTATCAT-GGGG--GTGGTTACAGTGGCTTAAGAGCTCGTAACTT 176
||| ||||| |||| || |||| |||| |||||||||||| ||| ||||||||||||||
Sbjct 122 TCGGAACAGCCCTAGTTTTCATGGGGGTAGTGGTTACAGTGTCTTTAGAGCTCGTAACTT 181
Query 177 AACATTCAAGAAAGTTGTGAAGCAAGTGATGAGAGACCAGTCATATAATCAATTCATGAT 236
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 182 AACATTCAAGAAAGTTGTGAAGAAAGTGATGAGAGACCAGTCAAATAATCAATTCATGAT 241
Query 237 TCAGATGGAGAACATGATAAGAAGAATTGTCGGAGAGGAGACACATCGT-GTTCTTCAAA 295
||||||||||||||||||||||||||||||| ||||||||| ||| ||| | |||||||
Sbjct 242 TCAGATGGAGAACATGATAAGAAGAATTGTCCGAGAGGAGATACAGCGTAG-TCTTCAAC 300
Query 296 CTTTT-TACTCTTCATCACGTGTCTCAATGGAGCGATCGCATTCAGAAACGCCATCATCG 354
||||| | |||||||||| | ||||||||||||||||| | |||||||||||||| ||
Sbjct 301 CTTTTCT-CTCTTCATCATGCGTCTCAATGGAGCGATCTCGCTCAGAAACGCCATCGTCT 359
Query 355 CGGC-CACGATTGAAGCTGCGATTCATAAACTCGCCGCCGTCATCGATATTCACGGGGTC 413
| || |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 360 C-GCTCACGATTGAAGCTGTGCTTCATAAACTCGCCGCCATCATCGATATTCACGGGGTC 418
Query 414 CAAGATCGAAGCCGAGGGCGGTTCTCCGC-TGATGATCGAGCTTGTGGACGCC-CCTACA 471
|||||||||||| |||| |||||||||| || |||||||||| ||||||||| || |||
Sbjct 419 CAAGATCGAAGCTGAGGATGGTTCTCCGCTTG-TGATCGAGCTCGTGGACGCCACC-ACA 476
Query 472 AACACTCGAGTTAGTTCGGGACCGTTCTCATCTTCTCGGGTCGAGCTCGTGCCGCTGAAC 531
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 AACACTCTAGTTAGTACGGGACCGTTCTCGTCTTCTCGGGTCGAGCTCGTGCCGCTGAAC 536
Query 532 GCTAATTTCACGGAAGAAAGCTGGACCGTGGACGGATTTAAGCGGAATATTCTCAAGCAA 591
||| ||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||
Sbjct 537 GCTGATTTCACGGAAGAAAGCTGGACCGTTGAGGGATTTAATCGGAATATTCTCACGCAA 596
Query 592 CGTGAAGGGAAACGACCGTTGCTCACTGGAGATCTAACGTTGATGCTTAAAAACGGTGTT 651
|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 597 CGTGAAGGGAAACGTCCGTTGCTCACTGGAGACCTAACGGTGATGCTTAAAAACGGTGTT 656
Query 652 GGAGTTATCGCCGGAGATATCGCTTTCTCGGATAATTCGAGCTGGACTAGGAGTCGGAAG 711
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 657 GGAGTTATAACCGGAGATATAGCTTTCTCGGATAACTCGAGCTGGACTAGGAGTCGGAAG 716
Query 712 TTCCGGTTAGGTGCTAAGTTGACCGGAGATGGAGCCGTGGAGGCGAGAAGTGAAGCCTTT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 717 TTCCGGTTAGGTGCTAAGTTGACCGGAGATGGAGCCGTGGAGGCGAGAAGTGAAGCTTTT 776
Query 772 GGATGTTTAGACCAACGAGGAGAATCTTATAGAAAACATTATCCTCCGTACCCCAATGAT 831
|||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||
Sbjct 777 GGATGTAGAGACCAACGAGGAGAATCTTATAAAAAACATCATCCTCCGTGCCCCAGTGAT 836
Query 832 GACGTTTGGAGACTAGAGAAAATCGCGAAAGATGGCGTTTCGGCAAAGCGTTTGGCTGAA 891
|| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 837 GAGGTTTGGAGACTAGAGAAAATCGCGAAAGATGGAGTTTCGGCAACGCGTTTGGCTGAA 896
Query 892 CGCGAGATTTATA-CCGTCAAGGAGTTTCGCCGTTTGTATACTGTAAATCCAAATGAGCT 950
||| |||||| || |||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 897 CGCAAGATTT-TAACCGTCAAGGATTTTCGCCGTTTGTATACTGTAAATCGAAATGAGTT 955
Query 951 ACACAACATAATTGGTGTAGGGATCTCAAAGAAAACATGGAATACAATTGTATCACACGC 1010
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 956 ACACAACATAATTGGTGCAGGGGTCTCAAAGAAAACATGGAACACAATTGTATCACATGC 1015
Query 1011 CATGGATTGCGTTTTGGACGAAACAGAGTGTTACACTTACGATGCAAACACTCCGGGAGT 1070
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 1016 CATGGATTGCGTTTTGGACGAAACAGAGTGTTACATTTACAATGCAAACACTCCGGGCGT 1075
Query 1071 AACTCTTCTCTTCAACTCTGTTTATGAGTTGATAAAAGTGTCATTCAATGGCGACGATAT 1130
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1076 AACACTTCTCTTCAACTCTGTTTATGAGTTGATAAGAGTGTCATTCAATGGCAACGATAT 1135
Query 1131 CCAAAACCTCGATCAGCCAATTCTAAACCAATTAAAGTTTGAAGCTTATCAAAACCTTAA 1190
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1136 CCAAAACCTTGATCAGCCAATTCTAGACCAATTAAAGGCCGAAGCTTATCAAAACCTTAA 1195
Query 1191 CCGCATTACAGCCGTTACCGATAGGACCTTTATGGGTCATCCGCAAAGGTCCTTACAGTG 1250
|||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1196 CCGCATTACAGCGGTTAACGATAGGACCTTTGTGGGTCATCCACAAAGGTCCTTACAGTG 1255
Query 1251 CCCGCAAGATCCTGGATTTGGCATAACATGTTCTGGATCGCAGCACATTGCCTTTCAAGG 1310
|||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||
Sbjct 1256 CCCGCAAGATCCTGGATTTGTCGTAACATGTTCTGGATCGCAGCACATCGACTTTCAAGG 1315
Query 1311 AAGTTTGGATCCATCAAGCTCTTCAATGTCGCTTTGCCACGCAGCTGCAAGCTCAACGGT 1370
|||||||||||||||||||||||| ||| | ||||||||| |||| |||||||||||||
Sbjct 1316 AAGTTTGGATCCATCAAGCTCTTCGATGGCTCTTTGCCACAAAGCTTCAAGCTCAACGGT 1375
Query 1371 CCACCCTGATGTGTTGATGAGTTTCGATAACTCACCAACCCCGACTTTTCATATCAACAA 1430
|||||||||||| |||||||||| ||||||||| ||||| ||| ||||||||| ||||
Sbjct 1376 CCACCCTGATGTCCTGATGAGTTTTGATAACTCATCAACCGCGAGGTTTCATATCGACAA 1435
Query 1431 AAAGTTCTTACCGACTTTCGGAAACAGCTTCAAAGTAAGTGAACTCGATCCAGTACCCGG 1490
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1436 AAAGTTCTTACCGACTTTCGGAAACAGCTTCAAAGTAAGTGAACTCGATCAAGTACACGG 1495
Query 1491 AAAATCACAAACTGTAGTGACAAGAGGTTGTATCGAGAAT---GAGGAGGATGAGAACGC 1547
||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1496 AAAATCACAAACTGTTGTGACAAAAGGTTGTATAGAGAATAACGAGGAGGATGAGAACGC 1555
Query 1548 -TTTTGCTTATCATCAACATTATGACATGACCACAAACTGGTCACCTGGTACGCACGAAG 1606
|||| |||||||||| ||| ||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1556 GTTTT-CTTATCATCACCATGATGACATGACCTCAAGCTGGTCACCTGGTACGCACCAAG 1614
Query 1607 CCGTTGAAACGATGTATCTTACCGTGTCTGGGACGGAACAAACTGGTATGTTCGATGTTC 1666
||||||||||||||| |||||||||||||| ||||||| || |||| |||||||||||||
Sbjct 1615 CCGTTGAAACGATGTTTCTTACCGTGTCTGAGACGGAAGAAGCTGGAATGTTCGATGTTC 1674
Query 1667 ATCTTACAAACGTTAATTTGGGATCTCCGAGAGCCAGGTGGTGTAAGGTTAAGGCAGCTT 1726
|| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1675 ATTTTGCAAACGTTAATTTGGGATCTCCAAGAGCCAGGTGGTGTAAGGTTAAGGCAGCTT 1734
Query 1727 TCAAGGTCAGGGCAGCTTTTAAGGAAGTCCGGAGACACACAACTGCCAAAAACCCGAGGG 1786
||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1735 TCAAGGTTAGGGCAGCTTTTAAGGAAGTCCGGAGACACACAACTGCCAGAAATCCGAGGG 1794
Query 1787 AAGGCTTGTAAGATTTCTTGCCTACCGTATTAAATTCAGCGGTTTCTTGCATTGCACGA- 1845
||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 1795 AAGGCTTGTAAGAACTCTTGCCTACC-TATTAAAATCAGCGGTTTCTTGCGTTGCACGAT 1853
Query 1846 AAATGTGTATATAT-TT-GTGAATAGGGCTAGATAAATGGATCCCGGCCATTGAGTTACG 1903
|||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1854 AAATGTGTATATATATTTGTGAATAGGGTTAGATAAATGGATCCCGGCCATTGAGTTACG 1913
Query 1904 GGGATTAGTCTTTGTGTATATCATGTTTGTTAAtttttatttttttCCCTTGAATCAA-T 1962
|||||||| ||||| |||||||| || | |||||||||||| | | || |
Sbjct 1914 GGGATTAGCCTTTGCGTATATCA--------AAGT---ATTTTTTTCCCTGGG-T-AAGT 1960
Query 1963 ATAGCTGTGGCACAGGGTTTGTAACCTTTTTA---TATGCCATAGAAGATTCAGAAGTTT 2019
|||||||||||||||||||||||| || | | |||||| || |||| ||||| ||||
Sbjct 1961 ATAGCTGTGGCACAGGGTTTGTAAG-TTGTAACCATATGCCGTATAAGAATCAGAGGTTT 2019
Query 2020 CTTGTGGGACACGAAAGCTATGTAT 2044
||||| | |||||||||||||||||
Sbjct 2020 CTTGTTGTACACGAAAGCTATGTAT 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101304699810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5