BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489527
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26960.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2050 0.0
> AT5G26960.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:9484734-9486149 REVERSE LENGTH=1416
Length=1416
Score = 2050 bits (1110), Expect = 0.0
Identities = 1292/1380 (94%), Gaps = 11/1380 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGAGAGCTGCAATTCTCGCCATTTCTCATGGCTCATGAAATCTTGTTTACCAAAT 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGAAAACTGCAATTCTCGCCATTTCTCATGGCTCATGAAATCTTGTTTACCAAAT 60
Query 61 CCCTCCGACGCCAAATCACTTGTTCC-GATCCACCAACCGTCGTCCACGGCGGCCAATTC 119
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 61 CCCTCCGACGCCAAATCACTAG-TCCAGATCCACCAACCGTCGTCCACGGCGGCGAATTC 119
Query 120 TTCAGCTACAATCGCTTCTCTACCTGACGATTTACTCCTCGAATGTATCTCTAGAGTCCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTCAGCTACAATCGCTTCTCTACCTGACGATTTACTCCTCGAATGTATCTCAAGAGTCCC 179
Query 180 TTCCTCTTCAATTCCTTCTCTCGCCGCCGTTTGTCGCCGTTGGTCTCGTCTCCTCCTCTC 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 180 TTCCTCTTCAATTCCTTCTCTCGCCGTCGTTTGTCGCCGTTGGTCTCGTCTCCTCCACTC 239
Query 240 TCCTTACTTTCTCCACCTCCGTCGTCGTTTAGGTTTGCTCCGGCATTCTCTCTTCGCGAT 299
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TCCTTACTTTCTCCATCTCCGTCGTCGTTTAGGTTTGCTCCGACATTCTCTCTTCGCGAT 299
Query 300 CTCCGCCGTTGATTCAGGACTTTTCGCTGCGGATTTGCAGTTTCAGTCTGAGATTGCTTC 359
||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 300 ATCCACCGTCGATTCAGGACTTTTCGCCGCGGATTTGCAGTTTCAGTCCGAGATTGCGTC 359
Query 360 GTGGAAAGTGTCTCTTGCGGTTTCGAATAGGTCTGTTTGTGTTGAC-G--G--A---AA- 410
|||||||||||||||||||||||||| |||||||||| | |||||| | | | ||
Sbjct 360 GTGGAAAGTGTCTCTTGCGGTTTCGAGTAGGTCTGTTGGCGTTGACGGTAGTTATGGAAG 419
Query 411 TTTATCTCATGCTCGTGCGGCGGCGATTGGTCCTAGGGTTTATGTTGTTAGTAGAAATGC 470
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTTATCTCATGCTCGCGCGGCGGCGATTGGACCTAGGGTTTATGTTGTTAGTAGAAATGC 479
Query 471 TGTTTTGAGATACGATTCGTGGATGGGAACGCTTAATTTGAGATCTCCGATGCTTTTTCC 530
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 480 TGTTTTGAGATACGATTCGTGGATGGGAACGCTTAATTTGAGATCTCCGATGATTTTCCC 539
Query 531 TCGGAAGAAATTCGCAATCGCGGTGGTTTCTGGTAAGATCTATGTTGCTGGAGGTGGTGG 590
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 TCGGAAGAAATTCGCAATCGCGGTTGTTTCTGGTAAGATCTACGTTGCTGGAGGTGGTGG 599
Query 591 TGGTTCGGAAGTTGCGGCGGCGGTGGAAGAGTATGATCCGGAGTTAAATCGATGGGAAGT 650
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 600 TGGTTCGGAGGTTGCGGCGGCGGTGGAAGAGTATGATCCGGAGTTGAATCGGTGGGAAGT 659
Query 651 TGTGACTCAATCGGCGAGGAAGAGATATGGTTGCATTGGAGCAGCCGTTGACGGAGTTTT 710
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 660 TGTGACTCAATCGGCGAGGAAGAGATACGGTTGCATCGGAGCAGCCGTTGACGGAGTTTT 719
Query 711 TTATGTGATTGGTGGATTGAAAATTGGGAACGAGACTTCACGCGCGATGGCGGCGCGTGC 770
||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 720 TTATGTGATCGGTGGATTGAAAATTGGGAATGAGACCTCACGCGCGGTGGCGGCGCGTGC 779
Query 771 TTATGCAAGCTCTATGGATCTTTTTGATGTGGAATCGCGTCAGTGGCTGAGGAGTCGTTC 830
|||||| ||||||||||||||||| |||||||| |||||||||||| | |||||||||||
Sbjct 780 TTATGCGAGCTCTATGGATCTTTTCGATGTGGAGTCGCGTCAGTGGTTAAGGAGTCGTTC 839
Query 831 GGTTCCTGGCGGTGGATGTGTAGTGGCGGCGTGTGCGGCGGTTGGATATGTGTATGTGCT 890
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGTTCCTGGTGGTGGATGTGTAGTGGCGGCGTGTGCGGCGGTTGGATATGTGTATGTGCT 899
Query 891 TAGCAGCCATGCGGTGGAGCTTTCGTTTTGGCGATTTGATGCTCGCCGTCGCGGTGGCAA 950
| ||| || |||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 900 AACCAGTCACGCGGTGGAGCTTTCGTTTTGGCGATTTGATGCGCGTCGTCGTGGTGGAAA 959
Query 951 CAGCGGGTTCGGGGAATGGCGGAGGCTGAAAAGTCCGCCGTTACCGGCACAAGTGCGGTT 1010
||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 960 CAGCGGGTTTGGAGAATGGCAGAGGCTGAAAAGTCCGCCGTTACCGGCACAGGTGCGGTT 1019
Query 1011 AGATGGAACAGTGAGGTTTAGCTGCATCGGAGTGGAAGATAAAGTGGCGGTGGTTCAGGT 1070
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 AGATGGAACGGTGAGGTTTAGCTGCGTCGGAGTGGAAGATAAAGTGGCGGTGGTTCAGGT 1079
Query 1071 GGTGGGATGCATTGACGATTTGCTCCGGCGGAGTGGAAGGAGTGAGAGAGGGCTTAGAGA 1130
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct 1080 GGTGGGATGCATTGACGATTTGCTTCGGCGGAGTGGGAGGGGTGAGAGAGGGATTAGAGA 1139
Query 1131 AAGCCTTGTGTTGCTGTACGATACGACGGATGGAGAGTGGAGGAGAGCGGCGGATTTACC 1190
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 AAGCCTTGTGTTGCTGTATGATACGACGGAGGGAGAGTGGAGGAGAGCGGCGGATTTACC 1199
Query 1191 GGAGATGATTACACGCGCGGCCTGTGCGTGTGTGGAGTGGTAAGAGCGCAGACAACGGCG 1250
||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||
Sbjct 1200 TGAGATGATTACACGCGCCGCCTGTGCGTGTGTGGAGTGGTAAGAGTGGAGACCACGGCG 1259
Query 1251 CAGGATTAAGGGTACGAGAAATGGGAAGAGGCTAACGTACGCAGGATTTATTAAAGTGAT 1310
|||||||| ||||||||||| | |||||| || |||||||||||||| ||||||||||
Sbjct 1260 CAGGATTATGGGTACGAGAAGTTGGAAGATGCCAACGTACGCAGGATATATTAAAGTGGG 1319
Query 1311 CAAAAACAAAATGATTATGATTGGTGCACATGTTTACTCTATGAAAAGCAACAGCTTCTT 1370
||||||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 1320 CAAAAACAATATCATTATGATTGGTGCACATGTTTACTGTATGAAAAGCAATAGCGTCTT 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67469532480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5