BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489530
Length=3162
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27000.1 | Symbols: ATK4, KATD | kinesin 4 | chr5:9498052-95... 4857 0.0
> AT5G27000.1 | Symbols: ATK4, KATD | kinesin 4 | chr5:9498052-9503134
FORWARD LENGTH=3194
Length=3194
Score = 4857 bits (2630), Expect = 0.0
Identities = 2998/3174 (94%), Gaps = 32/3174 (1%)
Strand=Plus/Plus
Query 1 ATCGCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 ATCTCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 100
Query 61 TGTCGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGATGTTGGTTTCGTTTCCCG 120
||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||| |
Sbjct 101 TGTTGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGACGTCGGTTTGGTTTCCAG 160
Query 121 GAAAGTTGATGAATCTTCTTTAAGAAGATATGAAGCTGTTGGGTGGCTAAGAGATATGGT 180
|||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||| |
Sbjct 161 AAAAGTTGAAGAATCTTCTTTGAGAAGATATGAAGCTGCTGGGTGGCTTAGAGATATGAT 220
Query 181 CGGAGTTTCCAATGGTAAAGATTTTCC-GGCTGAGCCTTCTGAAGAAGATTTTAGGCTTG 239
||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 221 CGGAGTTTCCAATGGTAAAGATTTTCCAGG-AGAGCCTTCTGAAGAAGAGTTTAGGCTTG 279
Query 240 GATTGCGAAGCGGAATCGTACTTTGCAATGTTCTTAACAAAGTTAATCCTGGATCAGTGT 299
|||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 280 GATTGCGAAGTGGGATCGTTCTTTGTAATGTTCTTAACAAAGTTAATCCTGGATCAGTCT 339
Query 300 CAAAGGTTGTTGAAGCACCGGATGATGTTGTAGATGGAGCTGCACTCTCAGCTTTCCAAT 359
||||||| |||||||| ||||| ||||||| ||||||||||||||| |||||||| ||||
Sbjct 340 CAAAGGTCGTTGAAGCGCCGGACGATGTTGCAGATGGAGCTGCACTTTCAGCTTTTCAAT 399
Query 360 ACTTTGAAAACATCAGAAACTTTTTAGTAGCCATAGAGGAAATGGGGTTGCCATCATTTG 419
||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 400 ACTTTGAAAACATAAGGAATTTTTTAGTAGCTATAGAGGAAATGGGGTTGCCATCATTTG 459
Query 420 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 519
Query 480 TTAAATCTTACAGCGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCCA 539
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 520 TTAAGTCTTATAGTGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCTA 579
Query 540 ACATGAAAAATAACTTTGGATCGAGAAAACCATTTCTGAGAAAAAGTTCAGAACCATTTG 599
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 580 ACATGAAACATAACTTTGGATCGAGAAAACTATTTCTGAGAAAAAGTTCAGAGCCATTTG 639
Query 600 TGAGTTCTATATCAAGAACTCACTCTACGGATATCTCATCAACTGATAC-ACCTATGAGT 658
| ||||||||||| |||||||| || |||||||| | |||||||||| | |||| |||||
Sbjct 640 TTAGTTCTATATCGAGAACTCAGTCGACGGATATGTTATCAACTGAT-CAACCTCTGAGT 698
Query 659 TCCGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGCTCATTCATTGCAGACAAAAAG 718
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 699 TCTGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGGTCATTCATTGCAGACAGAAAG 758
Query 719 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 818
Query 779 CAACGTTTATCAATCCACAACGAAATGATGAAATCAAGATCAAAGCCTATTCCAGAAGAT 838
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 819 CAGCGTTTATCAATCCACAATGAAATGATGAAATCAAGTTCAAAGCCTATTCCAGAAGAT 878
Query 839 GATTCATCATGTGAGACAATGGTTCGGTCTCAGCTATGTGATGCAAGACAACATGAGGAA 898
|||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 879 GATTCATCCTGTGAGACAGTGGTCCGGTCTCAGCTGTGTGATGCAAGACAACATGAGGAA 938
Query 899 TCAGAAGAAAACAGTCCGCCCCAGGTTGTAGAAAAAAGGTTTCAAAGGACAAATTTTGAA 958
|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 939 GCAGAAGAAAATAGTCCGCCCCAGGTTGTGGAAAAAAAGTTTCAAAGGACAAATTTTGAA 998
Query 959 CATTACGAAGAACAAGAGATTCTTTTGAACCAACAAAAACACATCCAAGAGTTAAAGCAA 1018
||| ||||||||||| |||||||| |||| ||||||||||||||||| ||||| ||||||
Sbjct 999 CATCACGAAGAACAAAAGATTCTTCTGAATCAACAAAAACACATCCAGGAGTTGAAGCAA 1058
Query 1019 ACCTTAAACACTACAAAAGCGGGAATGCAATTACTGCAGATGAAGTATCAAGAAGATTTC 1078
|||||| ||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 1059 ACCTTATACACTACAAAAGCAGGAATGAAATTGCTGCAGATGAAGTATCAAGAAGATTTC 1118
Query 1079 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1178
Query 1139 CTTGAAGAAAACCGCAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1198
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CTTGAAGAAAACCGTAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1238
Query 1199 TATTGTCGGGTTAGGCCATTCTTGCCTGGGCAATCAAA-TGGTGGTTTGAGTGCCGTAG- 1256
|| ||||| |||||||| ||||||||||||||| ||| |||||||||||||||||| |
Sbjct 1239 TACTGTCGAGTTAGGCCGTTCTTGCCTGGGCAA-GAAAGTGGTGGTTTGAGTGCCGTGGA 1297
Query 1257 AGCACATAGACGAAGGGACCATCACCATCAGAGTACCATCAAAGTATGGGAAAGCAGGGC 1316
|| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1298 AG-ACATAGACGAAGGGACCATCACGATCAGAGTTCCATCAAAGTATGGGAAAGCAGGAC 1356
Query 1317 AAAAACCATTTATGTTCAATAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1376
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 AAAAACCATTTATGTTCAACAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1416
Query 1377 TAGACATGCAACCTTTAGTACGCTCGGTTCTTGATGGCTACAATGTCTGCATCTTCGCTT 1436
||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1417 CAGACATGCAGCCTTTGGTACGGTCGGTTCTCGATGGCTACAATGTCTGCATCTTCGCTT 1476
Query 1437 ATGGCCAAACTGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1496
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ATGGCCAAACCGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1536
Query 1497 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1596
Query 1557 AAGACACGACCAACTACGAAATCTCAGTTCAGATGCTGGAAATTTACAACGAGCAAGTCA 1616
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1597 AAGACACGACCAGCTACGAAATCTCAGTTCAGATGTTGGAAATTTACAACGAGCAAGTCA 1656
Query 1617 GAGATCTACTTG-CCACAGATGGCCAGACTAAAAGATTAGAGATCAGAAATAACTCTCAC 1675
|||||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1657 GAGATCTACTTGCCCA-AGATGGCCAGACTAAAAGGTTAGAGATCAGAAACAACTCTCAC 1715
Query 1676 AATGGAATTAATGTTCCGGGAGCAAGTCTAGAGCCTGTCTCATCGACGGATGACATTATA 1735
|||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 1716 AATGGAATCAATGTACCGGAAGCAAGTCTAGTGCCTGTCTCATCGACGGATGACGTTATA 1775
Query 1736 CAGCTGATGGAACTGGGACAAATGAACCGTGCAGTGAGCTCTACAGCTATGAATGACAGA 1795
||||| ||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1776 CAGCTAATGGATTTGGGACACATGAATCGTGCAGTGAGCTCTACAGCCATGAATGACAGA 1835
Query 1796 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGG 1855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGC 1895
Query 1856 GCCATCCTTCATGGTTCTATGCATCTAGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1915
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1896 TCTATCCTCCATGGTTCTATGCATCTGGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1955
Query 1916 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAGCACATCAACAAGTCCCTCTCGGCT 1975
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1956 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAACACATCAACAAGTCCCTCTCGGCT 2015
Query 1976 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2075
Query 2036 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACGCTTATGTTTGTC 2095
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2076 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACACTTATGTTTGTC 2135
Query 2096 CACATAAGTCCAGAAGCTGACACTCTCGGAGAAACTATTAGTACTCTGAAATTTGCTGAA 2155
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2136 CACATAAGTCCAGAACCTGACACTCTCGGAGAAACTATTAGTACTCTGAAGTTTGCTGAA 2195
Query 2156 CGAGTGGGGAGTGTTGAGTTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2215
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 CGAGTGGGGAGTGTTGAGCTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2255
Query 2216 GAGCTTAAAGAACAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2275
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GAGCTTAAAGAGCAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2315
Query 2276 GATGTACAACCAACCGCTCTACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2335
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2316 GATGTACAACCAACAGCTATACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2375
Query 2336 GAAACTCCTACTATTCGACCCAAATTACCAACCATGGGAAACACATCAAGCAACAGTAGG 2395
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2376 GAAACTCCTACTATTCGACCCAAATTACCTACCATGGGAAACACATCAAACAACAGTAGG 2435
Query 2396 CCCCAGATCATGGATCTTAGTGGACCAGAGGTATTCTTTAC--C-GATACTGCATCGTCA 2452
||||||||||||||||| ||||||||||||| || || || | | ||||||||| |||
Sbjct 2436 CCCCAGATCATGGATCTAAGTGGACCAGAGGC-TT-TTAACGACAG-TACTGCATCTTCA 2492
Query 2453 AGAAGACACAGCTTAGATATCCATGAGCTTATGAAATCTTCTTCTCCGGCTTGGCCAAGG 2512
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2493 AGAAGACACAGCTTAGATATCCATGAGCTAATGAAATCTTCTTCTCCGGCTTGGCCGAGG 2552
Query 2513 CAGTCACTCAATGCAAAAGACGAGGACAGAGAGT-TCAAGTCAGGG-GAGTGGATCGATA 2570
||| ||||||||| |||||||||||||||||| | | ||||| ||| |||||||||||||
Sbjct 2553 CAGCCACTCAATGGAAAAGACGAGGACAGAGAATCT-AAGTC-GGGCGAGTGGATCGATA 2610
Query 2571 AGCACGAAGAGTTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2630
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 AGCATGAAGAATTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2670
Query 2631 TGGTCCCTCAACAACCATCACTGTATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2690
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2671 TGGTCCCTCAACAACAATCACTATATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2730
Query 2691 CAGATAATGAATCTGATGAAACCGCAACAAGCGATTGCTCAGATACCGATTTGTTGTGGC 2750
||||||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 2731 CAGATAACGAATCTGATGAAGCCGCAACAAGCGATTGCTCAGATTCCGATTTGCTGTGGC 2790
Query 2751 GATTGAGCGTTCAAGTGAATGTTCCTAAGGTTTCTAATATCCAAAACTCAACAAACCCCA 2810
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 2791 GATTGAGCGTTCAAGTGAATGTTCCCAAAGTTTCTAATATCCAAAACTCAGCAAACCCCA 2850
Query 2811 AACCAAAGAAAATTCAGCCCAGAACTGCAAAACTCTCAGAAACTAGAAGTTTAATTCCGT 2870
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2851 AACCAAAGAAAATTCAGCCCAGAACTGCTAAACTCTCAGAAACTAGAAGTTTAATTCCAT 2910
Query 2871 CGTTGATCCCAGCACCAAGCAAGAGACCTCCTAACACCGTAAATTCACAGCCGCAACGAC 2930
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2911 CGCTGATCCCAGCACCAAGCAAGAGACCTCCTAACACAGTAAATTCACAGCCGCAGCGAC 2970
Query 2931 CAACCAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACATGTTTTCACCAGTTTT 2990
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2971 CAACGAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACA------CACCAGTTTT 3024
Query 2991 GTAAAGAGTTTAAAAAGGAAGGAGACAAAAAAGATTTGTTGTTT-GTATATTGTGAGAGA 3049
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 3025 GTAAAGAGTTTAAAAAGGAAGGAGACAAATA---TTTGTTGTTTTGTATATTGTGAGAGA 3081
Query 3050 AAAGCTTTCTCTGTTTTGGCCGCTCTTATTGTGCCATTTAGGTAAAA-TCTCAAATTTGT 3108
|| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3082 AA-GCTTTCTCTGTTGTGGCCGCTCTTATTGTGCCATTAAGGTAAAAATCTCAAATTTGC 3140
Query 3109 TGTTTTGAGTGTACAAAGAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3162
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3141 TGTTTTGAGTGTACAAAAAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157273366305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5