BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489530 Length=3162 Score E Sequences producing significant alignments: (Bits) Value AT5G27000.1 | Symbols: ATK4, KATD | kinesin 4 | chr5:9498052-95... 4857 0.0 > AT5G27000.1 | Symbols: ATK4, KATD | kinesin 4 | chr5:9498052-9503134 FORWARD LENGTH=3194 Length=3194 Score = 4857 bits (2630), Expect = 0.0 Identities = 2998/3174 (94%), Gaps = 32/3174 (1%) Strand=Plus/Plus Query 1 ATCGCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41 ATCTCAGATGGCGACGACATCGGAGATCAACAATGATCTTTCGTTTTCCGTTGTATCGAT 100 Query 61 TGTCGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGATGTTGGTTTCGTTTCCCG 120 ||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||| | Sbjct 101 TGTTGAAGATGTTCTTCAACAACATAGTAGCCGATCAAGCGACGTCGGTTTGGTTTCCAG 160 Query 121 GAAAGTTGATGAATCTTCTTTAAGAAGATATGAAGCTGTTGGGTGGCTAAGAGATATGGT 180 |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||| | Sbjct 161 AAAAGTTGAAGAATCTTCTTTGAGAAGATATGAAGCTGCTGGGTGGCTTAGAGATATGAT 220 Query 181 CGGAGTTTCCAATGGTAAAGATTTTCC-GGCTGAGCCTTCTGAAGAAGATTTTAGGCTTG 239 ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 221 CGGAGTTTCCAATGGTAAAGATTTTCCAGG-AGAGCCTTCTGAAGAAGAGTTTAGGCTTG 279 Query 240 GATTGCGAAGCGGAATCGTACTTTGCAATGTTCTTAACAAAGTTAATCCTGGATCAGTGT 299 |||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 280 GATTGCGAAGTGGGATCGTTCTTTGTAATGTTCTTAACAAAGTTAATCCTGGATCAGTCT 339 Query 300 CAAAGGTTGTTGAAGCACCGGATGATGTTGTAGATGGAGCTGCACTCTCAGCTTTCCAAT 359 ||||||| |||||||| ||||| ||||||| ||||||||||||||| |||||||| |||| Sbjct 340 CAAAGGTCGTTGAAGCGCCGGACGATGTTGCAGATGGAGCTGCACTTTCAGCTTTTCAAT 399 Query 360 ACTTTGAAAACATCAGAAACTTTTTAGTAGCCATAGAGGAAATGGGGTTGCCATCATTTG 419 ||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||| Sbjct 400 ACTTTGAAAACATAAGGAATTTTTTAGTAGCTATAGAGGAAATGGGGTTGCCATCATTTG 459 Query 420 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 AAGCTTCAGATATGGAGAAGGGAGGCAAGTCTATAAGGATAGTGAACTGCATTCTTGCCC 519 Query 480 TTAAATCTTACAGCGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCCA 539 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 520 TTAAGTCTTATAGTGAGTGGAAACTGAAAGGTGAAAATGGTCCATGGAGGTATGGATCTA 579 Query 540 ACATGAAAAATAACTTTGGATCGAGAAAACCATTTCTGAGAAAAAGTTCAGAACCATTTG 599 |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 580 ACATGAAACATAACTTTGGATCGAGAAAACTATTTCTGAGAAAAAGTTCAGAGCCATTTG 639 Query 600 TGAGTTCTATATCAAGAACTCACTCTACGGATATCTCATCAACTGATAC-ACCTATGAGT 658 | ||||||||||| |||||||| || |||||||| | |||||||||| | |||| ||||| Sbjct 640 TTAGTTCTATATCGAGAACTCAGTCGACGGATATGTTATCAACTGAT-CAACCTCTGAGT 698 Query 659 TCCGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGCTCATTCATTGCAGACAAAAAG 718 || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 699 TCTGATGGAGATTCTAGATCCATAAATGGGCTTGTTCGGTCATTCATTGCAGACAGAAAG 758 Query 719 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 CATGAAGATATTCCAAATGTTGTAGAGTCTGTGTTGAACAAAGTTATGGAAGAAGTCCAG 818 Query 779 CAACGTTTATCAATCCACAACGAAATGATGAAATCAAGATCAAAGCCTATTCCAGAAGAT 838 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 819 CAGCGTTTATCAATCCACAATGAAATGATGAAATCAAGTTCAAAGCCTATTCCAGAAGAT 878 Query 839 GATTCATCATGTGAGACAATGGTTCGGTCTCAGCTATGTGATGCAAGACAACATGAGGAA 898 |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct 879 GATTCATCCTGTGAGACAGTGGTCCGGTCTCAGCTGTGTGATGCAAGACAACATGAGGAA 938 Query 899 TCAGAAGAAAACAGTCCGCCCCAGGTTGTAGAAAAAAGGTTTCAAAGGACAAATTTTGAA 958 |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 939 GCAGAAGAAAATAGTCCGCCCCAGGTTGTGGAAAAAAAGTTTCAAAGGACAAATTTTGAA 998 Query 959 CATTACGAAGAACAAGAGATTCTTTTGAACCAACAAAAACACATCCAAGAGTTAAAGCAA 1018 ||| ||||||||||| |||||||| |||| ||||||||||||||||| ||||| |||||| Sbjct 999 CATCACGAAGAACAAAAGATTCTTCTGAATCAACAAAAACACATCCAGGAGTTGAAGCAA 1058 Query 1019 ACCTTAAACACTACAAAAGCGGGAATGCAATTACTGCAGATGAAGTATCAAGAAGATTTC 1078 |||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||| Sbjct 1059 ACCTTATACACTACAAAAGCAGGAATGAAATTGCTGCAGATGAAGTATCAAGAAGATTTC 1118 Query 1079 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 TTTCATCTAGGCAAGCATTTAAATGGTTTAGCTTATGCGGCTACGGGATACAAAAGGGTT 1178 Query 1139 CTTGAAGAAAACCGCAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1198 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1179 CTTGAAGAAAACCGTAAACTGTACAATCTAGTGCAGGATCTAAAAGGAAACATACGGGTG 1238 Query 1199 TATTGTCGGGTTAGGCCATTCTTGCCTGGGCAATCAAA-TGGTGGTTTGAGTGCCGTAG- 1256 || ||||| |||||||| ||||||||||||||| ||| |||||||||||||||||| | Sbjct 1239 TACTGTCGAGTTAGGCCGTTCTTGCCTGGGCAA-GAAAGTGGTGGTTTGAGTGCCGTGGA 1297 Query 1257 AGCACATAGACGAAGGGACCATCACCATCAGAGTACCATCAAAGTATGGGAAAGCAGGGC 1316 || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 1298 AG-ACATAGACGAAGGGACCATCACGATCAGAGTTCCATCAAAGTATGGGAAAGCAGGAC 1356 Query 1317 AAAAACCATTTATGTTCAATAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1376 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1357 AAAAACCATTTATGTTCAACAAAGTCTTTGGTCCTTCTGCAACACAAGAGGAAGTGTTTT 1416 Query 1377 TAGACATGCAACCTTTAGTACGCTCGGTTCTTGATGGCTACAATGTCTGCATCTTCGCTT 1436 ||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1417 CAGACATGCAGCCTTTGGTACGGTCGGTTCTCGATGGCTACAATGTCTGCATCTTCGCTT 1476 Query 1437 ATGGCCAAACTGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1496 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1477 ATGGCCAAACCGGGTCAGGGAAAACTTTTACCATGACAGGGCCTAAGGAACTGACTGAAG 1536 Query 1497 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1537 AGAGCCTAGGTGTGAACTACAGGGCACTGGCAGATCTGTTTCTTCTATCAAATCAAAGAA 1596 Query 1557 AAGACACGACCAACTACGAAATCTCAGTTCAGATGCTGGAAATTTACAACGAGCAAGTCA 1616 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1597 AAGACACGACCAGCTACGAAATCTCAGTTCAGATGTTGGAAATTTACAACGAGCAAGTCA 1656 Query 1617 GAGATCTACTTG-CCACAGATGGCCAGACTAAAAGATTAGAGATCAGAAATAACTCTCAC 1675 |||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1657 GAGATCTACTTGCCCA-AGATGGCCAGACTAAAAGGTTAGAGATCAGAAACAACTCTCAC 1715 Query 1676 AATGGAATTAATGTTCCGGGAGCAAGTCTAGAGCCTGTCTCATCGACGGATGACATTATA 1735 |||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||| Sbjct 1716 AATGGAATCAATGTACCGGAAGCAAGTCTAGTGCCTGTCTCATCGACGGATGACGTTATA 1775 Query 1736 CAGCTGATGGAACTGGGACAAATGAACCGTGCAGTGAGCTCTACAGCTATGAATGACAGA 1795 ||||| ||||| ||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 1776 CAGCTAATGGATTTGGGACACATGAATCGTGCAGTGAGCTCTACAGCCATGAATGACAGA 1835 Query 1796 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGG 1855 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1836 AGTAGTCGATCTCACAGTTGTGTAACTGTTCATGTTCAAGGCAGAGACCTCACATCTGGC 1895 Query 1856 GCCATCCTTCATGGTTCTATGCATCTAGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1915 | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1896 TCTATCCTCCATGGTTCTATGCATCTGGTTGATCTTGCAGGAAGCGAGAGAGTGGACAAG 1955 Query 1916 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAGCACATCAACAAGTCCCTCTCGGCT 1975 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1956 TCTGAGGTGACTGGAGACAGACTGAAGGAGGCTCAACACATCAACAAGTCCCTCTCGGCT 2015 Query 1976 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2016 CTTGGAGATGTCATCTCCTCGCTTTCCCAGAAGACTTCTCATGTGCCTTACAGAAACAGT 2075 Query 2036 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACGCTTATGTTTGTC 2095 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2076 AAACTCACTCAGCTGCTGCAGGACTCCCTCGGAGGATCAGCCAAGACACTTATGTTTGTC 2135 Query 2096 CACATAAGTCCAGAAGCTGACACTCTCGGAGAAACTATTAGTACTCTGAAATTTGCTGAA 2155 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2136 CACATAAGTCCAGAACCTGACACTCTCGGAGAAACTATTAGTACTCTGAAGTTTGCTGAA 2195 Query 2156 CGAGTGGGGAGTGTTGAGTTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2215 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2196 CGAGTGGGGAGTGTTGAGCTAGGCGCTGCTCGTGTGAACAAAGATAACTCAGAGGTTAAG 2255 Query 2216 GAGCTTAAAGAACAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2275 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2256 GAGCTTAAAGAGCAGATTGCTAATCTTAAGATGGCTCTAGTGAGGAAAGGAAATGGTAAT 2315 Query 2276 GATGTACAACCAACCGCTCTACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2335 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2316 GATGTACAACCAACAGCTATACCAATCAACCGTGAGAGAATATCGAGAAGAAGATCACTC 2375 Query 2336 GAAACTCCTACTATTCGACCCAAATTACCAACCATGGGAAACACATCAAGCAACAGTAGG 2395 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 2376 GAAACTCCTACTATTCGACCCAAATTACCTACCATGGGAAACACATCAAACAACAGTAGG 2435 Query 2396 CCCCAGATCATGGATCTTAGTGGACCAGAGGTATTCTTTAC--C-GATACTGCATCGTCA 2452 ||||||||||||||||| ||||||||||||| || || || | | ||||||||| ||| Sbjct 2436 CCCCAGATCATGGATCTAAGTGGACCAGAGGC-TT-TTAACGACAG-TACTGCATCTTCA 2492 Query 2453 AGAAGACACAGCTTAGATATCCATGAGCTTATGAAATCTTCTTCTCCGGCTTGGCCAAGG 2512 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 2493 AGAAGACACAGCTTAGATATCCATGAGCTAATGAAATCTTCTTCTCCGGCTTGGCCGAGG 2552 Query 2513 CAGTCACTCAATGCAAAAGACGAGGACAGAGAGT-TCAAGTCAGGG-GAGTGGATCGATA 2570 ||| ||||||||| |||||||||||||||||| | | ||||| ||| ||||||||||||| Sbjct 2553 CAGCCACTCAATGGAAAAGACGAGGACAGAGAATCT-AAGTC-GGGCGAGTGGATCGATA 2610 Query 2571 AGCACGAAGAGTTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2630 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2611 AGCATGAAGAATTAATTCAAAATCAGAATCCAAATTCTCCCGAGCAATTCTACCAGTCAA 2670 Query 2631 TGGTCCCTCAACAACCATCACTGTATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2690 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2671 TGGTCCCTCAACAACAATCACTATATGGTGGGAAACAAGATTTCGAAGTGCAGAGTATTA 2730 Query 2691 CAGATAATGAATCTGATGAAACCGCAACAAGCGATTGCTCAGATACCGATTTGTTGTGGC 2750 ||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 2731 CAGATAACGAATCTGATGAAGCCGCAACAAGCGATTGCTCAGATTCCGATTTGCTGTGGC 2790 Query 2751 GATTGAGCGTTCAAGTGAATGTTCCTAAGGTTTCTAATATCCAAAACTCAACAAACCCCA 2810 ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| Sbjct 2791 GATTGAGCGTTCAAGTGAATGTTCCCAAAGTTTCTAATATCCAAAACTCAGCAAACCCCA 2850 Query 2811 AACCAAAGAAAATTCAGCCCAGAACTGCAAAACTCTCAGAAACTAGAAGTTTAATTCCGT 2870 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 2851 AACCAAAGAAAATTCAGCCCAGAACTGCTAAACTCTCAGAAACTAGAAGTTTAATTCCAT 2910 Query 2871 CGTTGATCCCAGCACCAAGCAAGAGACCTCCTAACACCGTAAATTCACAGCCGCAACGAC 2930 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 2911 CGCTGATCCCAGCACCAAGCAAGAGACCTCCTAACACAGTAAATTCACAGCCGCAGCGAC 2970 Query 2931 CAACCAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACATGTTTTCACCAGTTTT 2990 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2971 CAACGAGAGATGGAAAACGCAGACTGAGTTTAGGCACATGAACA------CACCAGTTTT 3024 Query 2991 GTAAAGAGTTTAAAAAGGAAGGAGACAAAAAAGATTTGTTGTTT-GTATATTGTGAGAGA 3049 ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| Sbjct 3025 GTAAAGAGTTTAAAAAGGAAGGAGACAAATA---TTTGTTGTTTTGTATATTGTGAGAGA 3081 Query 3050 AAAGCTTTCTCTGTTTTGGCCGCTCTTATTGTGCCATTTAGGTAAAA-TCTCAAATTTGT 3108 || |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 3082 AA-GCTTTCTCTGTTGTGGCCGCTCTTATTGTGCCATTAAGGTAAAAATCTCAAATTTGC 3140 Query 3109 TGTTTTGAGTGTACAAAGAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3162 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3141 TGTTTTGAGTGTACAAAAAATGATTCCTTATTATACAATCTTCTTTTGGATTCT 3194 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 157273366305 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5