BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489532
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfami... 464 9e-130
AT5G27570.1 | Symbols: | Transducin/WD40 repeat-like superfami... 435 7e-121
AT5G26900.1 | Symbols: | Transducin family protein / WD-40 rep... 412 3e-114
AT4G33270.1 | Symbols: CDC20.1 | Transducin family protein / WD... 409 4e-113
AT5G27080.1 | Symbols: | Transducin family protein / WD-40 rep... 407 1e-112
AT5G27580.1 | Symbols: AGL89 | AGAMOUS-like 89 | chr5:9736651-9... 398 9e-110
AT4G33260.1 | Symbols: CDC20.2 | Transducin family protein / WD... 392 4e-108
AT5G27944.1 | Symbols: | MADS-box transcription factor family ... 357 2e-97
AT5G27070.1 | Symbols: AGL53 | AGAMOUS-like 53 | chr5:9527741-9... 324 2e-87
AT5G26950.1 | Symbols: AGL93 | AGAMOUS-like 93 | chr5:9483251-9... 318 7e-86
AT5G27043.1 | Symbols: | pseudogene, hypothetical protein | ch... 257 2e-67
AT5G27090.1 | Symbols: AGL54 | AGAMOUS-like 54 | chr5:9531845-9... 246 3e-64
AT5G26880.1 | Symbols: AGL26 | AGAMOUS-like 26 | chr5:9457037-9... 106 6e-22
> AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9976007-9977601 FORWARD LENGTH=1287
Length=1287
Score = 464 bits (251), Expect = 9e-130
Identities = 333/371 (90%), Gaps = 12/371 (3%)
Strand=Plus/Plus
Query 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCACCAATGGTTCTGTCC 60
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATGAAGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCTCCAATGGTTCTGTCC 60
Query 61 ATTGTTGATGATG---ATCCACAGGAGAAGACAATGGATTCGTTGTGGAAGAAACGGCAC 117
||||||||| ||| || | |||||||||||||| ||||||||||||||||||| ||||
Sbjct 61 ATTGTTGATTATGGTGATTCTCAGGAGAAGACAATAGATTCGTTGTGGAAGAAACCGCAC 120
Query 118 GTCTCTGACCTAACTCGGTCTGGTTCT-CT-GG-TTGGAGTAACAGAAGCTTATCTTGTA 174
| ||||||||||||| ||||||||| | || || |||||||||||||||||||| ||| |
Sbjct 121 GGCTCTGACCTAACTTGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATTTTGCA 180
Query 175 ATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCTCCGAGAGCTTAC 234
||||||||||||||||||||||||||||| ||||||||| |||||||| || | |||
Sbjct 181 GTACCCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCTCAGACAATTTAT 240
Query 235 TGTCGTCGAGGATCTTCTTACGTAGTAACAGAGAAAGTGGAAGA-GA-GA--GA--CGAT 288
||||||||||||||||||||||||| |||||||||||||||||| || || || ||||
Sbjct 241 TGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAGTGGAAGAAGAAGACAGAGACGAT 300
Query 289 TTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTCTTCGTCGACATTGAA 348
|||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 301 TTCTTGAAGCAAGTTTGGTTTCTCACAGACAATTTGGTTTTCTTCTTCGTCGACATTGAA 360
Query 349 GAATCCATTGT 359
|||| ||||||
Sbjct 361 GAATACATTGT 371
Score = 427 bits (231), Expect = 1e-118
Identities = 280/303 (92%), Gaps = 5/303 (2%)
Strand=Plus/Plus
Query 957 TTCTGGAAT--ACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTGT 1014
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 937 TTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTATGT 996
Query 1015 TCATTGTTATGGAGAAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGAAT 1074
|||||||||||||| |||||||||||| |||| |||||| ||||||||||||| |||||
Sbjct 997 TCATTGTTATGGAGCAAAAGTGAAAGAGAGTTGCTTAGCGCACATGGGTTTACGCAGAAC 1056
Query 1075 CAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATACA 1134
|||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1057 CAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGGTCATACA 1116
Query 1135 TCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAGGA 1194
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1117 TCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAGGT 1176
Query 1195 GACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAG--A-GACCACCAAGAAAGCT 1251
||||||||||| ||| |||||||||||| ||||| |||| | ||||||||||||||||
Sbjct 1177 GACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCACCTAAGACCACCAAGAAAGCT 1236
Query 1252 GCT 1254
|||
Sbjct 1237 GCT 1239
Score = 143 bits (77), Expect = 5e-33
Identities = 93/101 (92%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 648 TTTGGGATTCTGTTTCCAATCGTCAACTGAGAACATTGAAAGGTTGTCACCAGTCAAGAG 707
||||||||| ||||||||||||||| |||||||||||| |||| ||||| |||||||||
Sbjct 533 TTTGGGATTGTGTTTCCAATCGTCATGTGAGAACATTGAGAGGTGGTCACGAGTCAAGAG 592
Query 708 TTGGATCATTGACATGGAACAATCACATTCTAACAACTGGA 748
| ||||||||| |||||||||||||||||||||||||||||
Sbjct 593 TAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGA 633
> AT5G27570.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9734896-9736131 REVERSE LENGTH=1236
Length=1236
Score = 435 bits (235), Expect = 7e-121
Identities = 282/304 (93%), Gaps = 5/304 (2%)
Strand=Plus/Plus
Query 956 GTTCTGGAAT--ACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 944
Query 1014 TTCATTGTTATGGAGAAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGAA 1073
||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 945 TTCATTGTTATGGAGCAAAAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAA 1004
Query 1074 TCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATAC 1133
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 1005 CCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGGTCATAC 1064
Query 1134 ATCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAGG 1193
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1065 ATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCTGCAGCCGG 1124
Query 1194 AGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAG--A-GACCACCAAGAAAGC 1250
||||||||||| ||| |||||||||||| ||||| |||| | |||||||||||||||
Sbjct 1125 TGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCACCTAAGACCACCAAGAAAGC 1184
Query 1251 TGCT 1254
||||
Sbjct 1185 TGCT 1188
Score = 318 bits (172), Expect = 7e-86
Identities = 222/246 (90%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 361 GTAACTTCAGCATCAAGAAAAGCCTACATGAAGCAATTGGCTGAGACTAT-ATATCAAAA 419
||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||| ||
Sbjct 61 GTAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGAGGCTATGA-ATCAGAA 119
Query 420 TCACACCCGAATTCTCGCTTTCAGAAACAAACCTAAAGCTCTG-TTTCCTAGTAATCACT 478
|| ||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 120 TCGCACTCGGATTCTCGCTTTCAGAAACAAACCTAAAGCTCTGCTTTC-TAGTAATCACT 178
Query 479 CTGTTTTTCCTCACCAACAACCTAAATCCGTAAAGCCTCGTAGATACATTCCTCAGACTA 538
||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 179 CTGATCCTCCTCACCAACAACCTATATCCGTAAAGCCTCGTAGATACATTCCTCAGAATA 238
Query 539 GAGAGAAAATCTTGAATGCACCTGGCACTGTGGATGACTTCTACATTAACTTGTTGGACT 598
| |||| | ||||| |||||||||| | || ||||||||||||| ||||||||||||| |
Sbjct 239 GTGAGAGAGTCTTGGATGCACCTGGAATTGCGGATGACTTCTACCTTAACTTGTTGGATT 298
Query 599 GGGGCA 604
||||||
Sbjct 299 GGGGCA 304
Score = 143 bits (77), Expect = 5e-33
Identities = 93/101 (92%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 648 TTTGGGATTCTGTTTCCAATCGTCAACTGAGAACATTGAAAGGTTGTCACCAGTCAAGAG 707
||||||||| |||||||||||||||| |||||||| ||| |||| ||||| |||||||||
Sbjct 479 TTTGGGATTGTGTTTCCAATCGTCAAGTGAGAACACTGAGAGGTGGTCACGAGTCAAGAG 538
Query 708 TTGGATCATTGACATGGAACAATCACATTCTAACAACTGGA 748
| ||||||||| |||||||||||||||||||||||||||||
Sbjct 539 TAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGA 579
> AT5G26900.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr5:9463752-9465086 FORWARD LENGTH=1335
Length=1335
Score = 412 bits (223), Expect = 3e-114
Identities = 279/305 (91%), Gaps = 7/305 (2%)
Strand=Plus/Plus
Query 956 GTTCTGGAAT--ACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1043
Query 1014 TTCATTGTTATGGAGAAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGAA 1073
|||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1044 TTCATTATTATGGAGCCAAAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAA 1103
Query 1074 TCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATAC 1133
|||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 1104 CCAGCTTACACTTTGGAAGTACCCATCTATGTCGAAAATGGCTGAACTCAATGGTCATAC 1163
Query 1134 ATCAAGAGTTCT-TTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAG 1192
|||||||||||| || ||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 1164 ATCAAGAGTTCTGTT-TATGGCACAGAGTCCGAATGGTTGTACCGTGGCTTCTGCAGCAG 1222
Query 1193 GAGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAG-A--GACCACCAAGAAAG 1249
| ||||||| ||||||| |||||||||||| ||||| |||| | ||||||||| ||||
Sbjct 1223 GTGACGAGAATCTTAGGCTTTGGAATGTTTTTGGAGAACCACCAAAGACCACCAAAAAAG 1282
Query 1250 CTGCT 1254
|||||
Sbjct 1283 CTGCT 1287
Score = 279 bits (151), Expect = 3e-74
Identities = 218/249 (88%), Gaps = 10/249 (4%)
Strand=Plus/Plus
Query 361 GTAACTTCAGCATCAAGAAAAGCCTACATGAAGCAATTGGCTGAGACTAT-ATATCAAAA 419
||||||||||||||||||||||||||||||| ||||||||||| | ||| | |||| ||
Sbjct 163 GTAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGTGGTTATGA-ATCAGAA 221
Query 420 TCACACCCGAATTCTCGCTTTCAGAAACAAACCTAAAGCTCTG-TTTCCTAGTAATCACT 478
|| |||||| ||||||||||||||||||||||||||| ||||| |||| || |||||||
Sbjct 222 TCGCACCCGTATTCTCGCTTTCAGAAACAAACCTAAATCTCTGCTTTC-TACCAATCACT 280
Query 479 CTGTTTTTCCTCACCAACAACC-TAAATCCGTAAAGCCTCGTAGATACATTCCTCAGACT 537
||| | |||||||||| |||| |||| |||||||||||||||||||||||||||||| |
Sbjct 281 CTGACTCTCCTCACCAA-AACCCTAAACCCGTAAAGCCTCGTAGATACATTCCTCAGAAT 339
Query 538 AGAGAGAAAATCTTGAATGCACCTGGCACTGT-GG-ATGACTTCTACATTAACTTGTTGG 595
|| |||| | ||||| |||||||||| ||| | || ||||||||| | ||||||||||||
Sbjct 340 AGTGAGAGAGTCTTGGATGCACCTGG-ACT-TAGGGATGACTTCTCCCTTAACTTGTTGG 397
Query 596 ACTGGGGCA 604
|||||||||
Sbjct 398 ACTGGGGCA 406
> AT4G33270.1 | Symbols: CDC20.1 | Transducin family protein /
WD-40 repeat family protein | chr4:16044352-16046792 REVERSE
LENGTH=1769
Length=1769
Score = 409 bits (221), Expect = 4e-113
Identities = 277/304 (91%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 956 GTTCTGGAATA--CACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1228 GTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTG 1287
Query 1014 TTCATTGTTATGGAGAAA-AAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGA 1072
||| ||||||||||| || || ||||||| |||| ||||||||||| |||||||||||||
Sbjct 1288 TTCGTTGTTATGGAGCAAGAA-TGAAAGAGAGTTGCTTAGCTCACACGGGTTTACACAGA 1346
Query 1073 ATCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATA 1132
||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1347 ATCAGCTCACACTTTGGAAGTATCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATA 1406
Query 1133 CATCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAG 1192
||||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 1407 CATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAG 1466
Query 1193 GAGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAGAGACCACCAAGAAAGCTG 1252
|||| |||||||| ||||| |||||||||| |||||||||||||||| |||| |||||||
Sbjct 1467 GAGATGAGACTCTGAGGTTCTGGAATGTTTTTGGAGTACCAGAGACCGCCAAAAAAGCTG 1526
Query 1253 CTCC 1256
||||
Sbjct 1527 CTCC 1530
Score = 169 bits (91), Expect = 8e-41
Identities = 140/164 (85%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 746 GGATGAGGTCATCCATTGTGGGAACTTA-TGTGGTTCACACTCAAGAGGTTTGTGGTCTT 804
|||| || ||| ||||||||| |||||| | || |||||||||||| |||||||| ||
Sbjct 960 GGATCAGATCACCCATTGTGGAAACTTACAGAGG-TCACACTCAAGAAGTTTGTGGGCTC 1018
Query 805 AAGTGGGAAAGATCTGGACAACAACTAGCAAGTGGTGGTAACGTCAATGTAGTACACATA 864
|||||| | |||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 1019 AAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATC 1078
Query 865 TGGGATTGTTCTGTCTCCTCCTCAAACTCAACTAGGCAATGGCT 908
|||||| |||||||| | |||||||||||||| | ||||||||
Sbjct 1079 TGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCT 1122
> AT5G27080.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr5:9529603-9531081 REVERSE LENGTH=1401
Length=1401
Score = 407 bits (220), Expect = 1e-112
Identities = 278/305 (91%), Gaps = 7/305 (2%)
Strand=Plus/Plus
Query 956 GTTCTGGAAT--ACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1037
Query 1014 TTCATTGTTATGGAGAAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGAA 1073
|||||| ||||||| |||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 1038 TTCATTACTATGGAGCCAAAGGGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAA 1097
Query 1074 TCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATAC 1133
|||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 1098 CCAGCTTACACTTTGGAAGTACCCATCTATGTCGAAAATGGCTGAACTCAATGGTCATAC 1157
Query 1134 ATCAAGAGTTCT-TTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAG 1192
|||||||||||| || ||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 1158 ATCAAGAGTTCTGTT-TATGGCACAGAGTCCGAATGGTTGTACCGTGGCTTCTGCAGCAG 1216
Query 1193 GAGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAG-A--GACCACCAAGAAAG 1249
| ||||||| ||||||| |||||||||||| ||||| |||| | ||||||||||||||
Sbjct 1217 GTGACGAGAATCTTAGGCTTTGGAATGTTTTTGGAGAACCACCAAAGACCACCAAGAAAG 1276
Query 1250 CTGCT 1254
|||||
Sbjct 1277 CTGCT 1281
Score = 300 bits (162), Expect = 3e-80
Identities = 220/247 (89%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 362 TAACTTCAGCATCAAGAAAAGCCTACATGAAGCAATTGGCTGAGACTAT-ATATCAAAAT 420
|||||||||||||||||||||||||||||| ||||||||||| | ||| | |||| |||
Sbjct 155 TAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGTGGTTATGA-ATCAGAAT 213
Query 421 CACACCCGAATTCTCGCTTTCAGAAACAAACCTAAAGCTCTG-TTTCCTAGTAATCACTC 479
| |||||| ||||| ||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 214 CGCACCCGTATTCTTGCTTTCAGAAACAAACCTAAAGCTCTGCTTT-CTAGCAATCACTC 272
Query 480 TGTTTTTCCTCACCAACAA-CCTAAATCCGTAAAGCCTCGTAGATACATTCCTCAGACTA 538
|| || |||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 273 TGATTCTCCTCACCAA-AACCCTAAATCCGTAAAGCCTCGTAGATACATTCCTCAGAATA 331
Query 539 GAGAGAAAATCTTGAATGCACCTGGCACTG-TGGATGACTTCTACATTAACTTGTTGGAC 597
| |||| | ||||| |||||||||| || |||||||||||||| ||||||||||||||
Sbjct 332 GTGAGAGAGTCTTGGATGCACCTGGT-CTTATGGATGACTTCTACCTTAACTTGTTGGAC 390
Query 598 TGGGGCA 604
|||||||
Sbjct 391 TGGGGCA 397
Score = 148 bits (80), Expect = 1e-34
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 648 TTTGGGATTCTGTTTCCAATCGTCAACTGAGAACATTGAAAGGTTGTCACCAGTCAAGAG 707
||||||||| |||||||||||||||| |||||||||||| |||| ||||| |||||||||
Sbjct 572 TTTGGGATTTTGTTTCCAATCGTCAAGTGAGAACATTGATAGGTGGTCACGAGTCAAGAG 631
Query 708 TTGGATCATTGACATGGAACAATCACATTCTAACAACTGGA 748
| ||||||||| |||||||||||||||||||||||||||||
Sbjct 632 TAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGA 672
> AT5G27580.1 | Symbols: AGL89 | AGAMOUS-like 89 | chr5:9736651-9737322
FORWARD LENGTH=672
Length=672
Score = 398 bits (215), Expect = 9e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Minus
Query 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCACCAATGGTTCTGTCC 60
||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 ATGGTGACGTCGATAGGTCTTGCTCTGTGTTTGACACACCAGTCACCAATGGTTCTGTCC 524
Query 61 ATTG-T--TGATGATGATCCACAGGAGAAGACAATGGATTCGTTGTGGAAGAAACGGCAC 117
|||| | |||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 523 ATTGTTGATGATGATGATCCTCAGGAGAAGACAATGGATTCGTTGTGGAAGAAACCGCAC 464
Query 118 GTCTCTGACCTAACTCGGTCTGGTTCTCTGGTTGGAGTAACAGAAGCTTATCTTGTAATA 177
| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 463 GGCTCTGACCTAGCTCGGTCTGGTTCTCGGGTTGGAGTAACAGAAGCTTATCTTGTAATA 404
Query 178 CCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCTCCGAGAGCTTACTGT 237
|||||||||||||||||| |||||||||||||||||| ||||||||||| | ||| |||
Sbjct 403 CCCGTAGACCACTTTCTAGCGAATCCTTCATCTCTAAGACTTTCTCCGACAATTTATTGT 344
Query 238 CGTCGAGGATCTTCTTACGTAGTAACAGAGAAAG 271
||||||||||||| |||||||| |||||||||||
Sbjct 343 CGTCGAGGATCTTTTTACGTAGAAACAGAGAAAG 310
Score = 132 bits (71), Expect = 1e-29
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 274 GAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTC 333
||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 83 GAAGAAAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCACAGACAATTTGGTTTTCTTC 24
Query 334 TTCGTCGACATTGAAGAATCCAT 356
|||||||||||||||||||||||
Sbjct 23 TTCGTCGACATTGAAGAATCCAT 1
> AT4G33260.1 | Symbols: CDC20.2 | Transducin family protein /
WD-40 repeat family protein | chr4:16041067-16043411 REVERSE
LENGTH=1741
Length=1741
Score = 392 bits (212), Expect = 4e-108
Identities = 272/301 (90%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 956 GTTCTGGAATA--CACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1227 GTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTG 1286
Query 1014 TTCATTGTTATGGAG-AAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGA 1072
||| ||||||||||| || || ||||||| |||| |||||||||||||||||||||||||
Sbjct 1287 TTCGTTGTTATGGAGCAAGAA-TGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGA 1345
Query 1073 ATCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATA 1132
|||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||
Sbjct 1346 ATCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATA 1405
Query 1133 CATCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAG 1192
||||||||||||| |||||||| || ||||| ||||||||||| || |||||||||||||
Sbjct 1406 CATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAG 1465
Query 1193 GAGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAGAGACCACCAAGAAAGCTG 1252
|||||||||| || ||||||||||| |||| ||||||||||||||| | || |||||||
Sbjct 1466 GAGACGAGACCCTGAGGTTTTGGAACGTTTTTGGAGTACCAGAGACTGCAAAAAAAGCTG 1525
Query 1253 C 1253
|
Sbjct 1526 C 1526
Score = 169 bits (91), Expect = 8e-41
Identities = 140/164 (85%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 746 GGATGAGGTCATCCATTGTGGGAACTTA-TGTGGTTCACACTCAAGAGGTTTGTGGTCTT 804
|||| || ||| ||||||||| |||||| | || |||||||||||| |||||||| ||
Sbjct 959 GGATCAGATCACCCATTGTGGAAACTTACAGAGG-TCACACTCAAGAAGTTTGTGGGCTC 1017
Query 805 AAGTGGGAAAGATCTGGACAACAACTAGCAAGTGGTGGTAACGTCAATGTAGTACACATA 864
|||||| | |||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 1018 AAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATC 1077
Query 865 TGGGATTGTTCTGTCTCCTCCTCAAACTCAACTAGGCAATGGCT 908
|||||| |||||||| | |||||||||||||| | ||||||||
Sbjct 1078 TGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCT 1121
> AT5G27944.1 | Symbols: | MADS-box transcription factor family
protein | chr5:9975918-9976592 REVERSE LENGTH=675
Length=675
Score = 357 bits (193), Expect = 2e-97
Identities = 250/277 (90%), Gaps = 6/277 (2%)
Strand=Plus/Minus
Query 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCACCAATGGTTCTGTCC 60
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 586 ATGATGAAGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCTCCAATGGTTCTGTCC 527
Query 61 ATTGTTGATGATG---ATCCACAGGAGAAGACAATGGATTCGTTGTGGAAGAAACGGCAC 117
||||||||| ||| || | |||||||||||||| ||||||||||||||||||| ||||
Sbjct 526 ATTGTTGATTATGGTGATTCTCAGGAGAAGACAATAGATTCGTTGTGGAAGAAACCGCAC 467
Query 118 GTCTCTGACCTAACTCGGTCTGGTTCT-CT-GG-TTGGAGTAACAGAAGCTTATCTTGTA 174
| ||||||||||||| ||||||||| | || || |||||||||||||||||||| ||| |
Sbjct 466 GGCTCTGACCTAACTTGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATTTTGCA 407
Query 175 ATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCTCCGAGAGCTTAC 234
||||||||||||||||||||||||||||| ||||||||| |||||||| || | |||
Sbjct 406 GTACCCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCTCAGACAATTTAT 347
Query 235 TGTCGTCGAGGATCTTCTTACGTAGTAACAGAGAAAG 271
||||||||||||||||||||||||| |||||||||||
Sbjct 346 TGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAG 310
Score = 121 bits (65), Expect = 2e-26
Identities = 77/83 (93%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 274 GAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTC 333
||||| ||||||||||||||||| |||||||||||||||| ||| | |||||||||||||
Sbjct 83 GAAGACAGAGACGATTTCTTGAAGCAAGTTTGGTTTCTCACAGACAATTTGGTTTTCTTC 24
Query 334 TTCGTCGACATTGAAGAATCCAT 356
||||||||||||||||||| |||
Sbjct 23 TTCGTCGACATTGAAGAATACAT 1
> AT5G27070.1 | Symbols: AGL53 | AGAMOUS-like 53 | chr5:9527741-9528604
FORWARD LENGTH=864
Length=864
Score = 324 bits (175), Expect = 2e-87
Identities = 254/289 (88%), Gaps = 18/289 (6%)
Strand=Plus/Minus
Query 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCACCAATGGTTCTGTCC 60
|||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 598 ATGATGACGTCGATAGGTCTTGCTCTGTGTTTGACACACCACTCATCAATGGTTCTGTCC 539
Query 61 ATTGTTGAT---GATGAT-C-C----A-C--AGGA-GA--AGACAATGGATTCGTTGTGG 105
||||||||| |||||| | | | | |||| || ||||||||||||||||||||
Sbjct 538 ATTGTTGATGACGATGATCCTCAATTAGCGAAGGAGGAGGAGACAATGGATTCGTTGTGG 479
Query 106 AAGAAACGGCACGTCTCTGACCTAACTCGGTCTGG---TTCTCTGGTTGGAGTAACAGAA 162
||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 478 AAGAAACCGCACGGGTCTGACCAAACTCGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAA 419
Query 163 GCTTATCTTGTAATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCT 222
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 418 GCTTATCTTGTAGTACTCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCT 359
Query 223 CCGAGAGCTTACTGTCGTCGAGGATCTTCTTACGTAGTAACAGAGAAAG 271
|||| | ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 358 CCGACAATTTAGTGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAG 310
Score = 126 bits (68), Expect = 5e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 274 GAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTC 333
||||| || ||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 83 GAAGACAGGGACGATTTCTTGAAACAAGTTTGGTTTCTCACAGACAATTTGGTTTTCTTC 24
Query 334 TTCGTCGACATTGAAGAATCCAT 356
|||||||||||||||||||||||
Sbjct 23 TTCGTCGACATTGAAGAATCCAT 1
> AT5G26950.1 | Symbols: AGL93 | AGAMOUS-like 93 | chr5:9483251-9484120
REVERSE LENGTH=870
Length=870
Score = 318 bits (172), Expect = 7e-86
Identities = 253/289 (88%), Gaps = 18/289 (6%)
Strand=Plus/Minus
Query 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCACCAATGGTTCTGTCC 60
|||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 598 ATGATGACGTCGATAGGTCTTGCTCTGTGTTTGACACACCACTCATCAATGGTTCTGTCC 539
Query 61 ATTGTTGAT---GATGAT-C-C----A-C--AGGA-GA--AGACAATGGATTCGTTGTGG 105
|||||||| |||||| | | | | |||| || ||||||||||||||||||||
Sbjct 538 GTTGTTGATGACGATGATCCTCAATTAGCGAAGGAGGAGGAGACAATGGATTCGTTGTGG 479
Query 106 AAGAAACGGCACGTCTCTGACCTAACTCGGTCTGG---TTCTCTGGTTGGAGTAACAGAA 162
||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 478 AAGAAACCGCACGGGTCTGACCAAACTCGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAA 419
Query 163 GCTTATCTTGTAATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCT 222
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 418 GCTTATCTTGTAGTACTCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCT 359
Query 223 CCGAGAGCTTACTGTCGTCGAGGATCTTCTTACGTAGTAACAGAGAAAG 271
|||| | ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 358 CCGACAATTTAGTGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAG 310
Score = 126 bits (68), Expect = 5e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 274 GAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTC 333
||||| || ||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 83 GAAGACAGGGACGATTTCTTGAAACAAGTTTGGTTTCTCACAGACAATTTGGTTTTCTTC 24
Query 334 TTCGTCGACATTGAAGAATCCAT 356
|||||||||||||||||||||||
Sbjct 23 TTCGTCGACATTGAAGAATCCAT 1
> AT5G27043.1 | Symbols: | pseudogene, hypothetical protein |
chr5:9519656-9520055 REVERSE LENGTH=400
Length=400
Score = 257 bits (139), Expect = 2e-67
Identities = 201/231 (87%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 361 GTAACTTCAGC-ATCAAGAAAAGCCTACATGAAGCAATTGGCTGA-GACTATATATCAAA 418
|||||||| || |||||||||||||||||||||||||||||| | | ||||| || |
Sbjct 171 GTAACTTC-GCTGTCAAGAAAAGCCTACATGAAGCAATTGGCTAAGGGCTATAAATTTGA 229
Query 419 ATCACACCCGAATTCTCGCTTTCAGAAACAAACCTAAAGCTCTGTTTCCTAGTAATCACT 478
||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 230 ATCGCACCCGGATTCTCGCTTTCAGAAACAAACCTCAAGCTCTGTTTCCTAGTAATCACT 289
Query 479 CTGTTTTTCCTCACCAACAACCTAAATCCGTAAAGCCTCGTAGATACATT-CCTCAGACT 537
||| ||||| |||||| || | | || ||||||||||||||| | ||||| |||||||||
Sbjct 290 CTGCTTTTCTTCACCAGCAGCGTTAACCCGTAAAGCCTCGTAAAAACATTTCCTCAGACT 349
Query 538 AGAGAGAAAATCTTGAATGCACCTGGCACTGTGGATGACTTCTACATTAAC 588
| |||| ||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 350 TGTGAGAGAATCTTGAATGCAAGTGGCATTGTGGATGACTTCTACCTTAAC 400
> AT5G27090.1 | Symbols: AGL54 | AGAMOUS-like 54 | chr5:9531845-9532408
FORWARD LENGTH=564
Length=564
Score = 246 bits (133), Expect = 3e-64
Identities = 177/197 (90%), Gaps = 7/197 (4%)
Strand=Plus/Minus
Query 80 AGGAGAAGACAATGGATTCGTTGTGGAAGAAACGGCAC-GTCTCTGACCTAACTCGGTCT 138
||||||||||||||||| |||||||||| |||| |||| | |||||||||||||||||||
Sbjct 501 AGGAGAAGACAATGGATACGTTGTGGAATAAACCGCACAG-CTCTGACCTAACTCGGTCT 443
Query 139 GG---TTCTCTGGTTGGAGTAACAGAAGCTTATCTTGTAATACCCGTAGACCACTTTCTA 195
|| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 442 GGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATCTTGTAGTACCCGTAGACCACTTTCTA 383
Query 196 ACGAATCCTTCATCTCTAACACTTTCTCCGAGAGCTTACT-GTCGTCGAGGATCTTCTTA 254
||||||||| ||||||||| ||||||||||| | || || ||||| |||||||| ||||
Sbjct 382 ACGAATCCTCCATCTCTAAGACTTTCTCCGACAATTT-CTTGTCGTGGAGGATCTGCTTA 324
Query 255 CGTAGTAACAGAGAAAG 271
||||| |||||||||||
Sbjct 323 CGTAGAAACAGAGAAAG 307
Score = 104 bits (56), Expect = 2e-21
Identities = 74/83 (89%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 274 GAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTC 333
||||| |||||||||||||||||||||||||||||||| | | | | |||||| ||||||
Sbjct 83 GAAGACAGAGACGATTTCTTGAAACAAGTTTGGTTTCTTACAAACAATTTGGTATTCTTC 24
Query 334 TTCGTCGACATTGAAGAATCCAT 356
||||| ||| |||||||||||||
Sbjct 23 TTCGTAGACGTTGAAGAATCCAT 1
> AT5G26880.1 | Symbols: AGL26 | AGAMOUS-like 26 | chr5:9457037-9459230
REVERSE LENGTH=1411
Length=1411
Score = 106 bits (57), Expect = 6e-22
Identities = 69/74 (93%), Gaps = 3/74 (4%)
Strand=Plus/Minus
Query 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACC-AT-T-CACCAATGGTTCTG 57
||| |||||||||||| ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1192 ATGGTGACGTCGATAGGTCTTGCTCTGTGTTTGACACACCGATATTCACCAATGGTTCTG 1133
Query 58 TCCATTGTTGATGA 71
||||||||||||||
Sbjct 1132 TCCATTGTTGATGA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5