BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489539
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27930.1 | Symbols: | Protein phosphatase 2C family protein... 1864 0.0
> AT5G27930.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:9958098-9960339 REVERSE LENGTH=1343
Length=1343
Score = 1864 bits (1009), Expect = 0.0
Identities = 1140/1204 (95%), Gaps = 6/1204 (0%)
Strand=Plus/Plus
Query 255 AAGCTTAAGGAGGAAGTTTCTCGTTGTTGTTTGATAAATTGATC-TTTGGGGTATTTAAA 313
|||||||||||| |||||||||||||||| |||||| ||| ||| |||||||||||||||
Sbjct 59 AAGCTTAAGGAGAAAGTTTCTCGTTGTTGCTTGATATATTAATCTTTTGGGGTATTTAAA 118
Query 314 AGATGGGACATTTCTCATCGATGTTTAATGGATTAGCTCGATCATTTTCGATAAAGAAAG 373
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 119 AGATGGGACATTTCTCATCGATGTTCAATGGATTAGCTCGATCATTTTCTATAAAGAAAG 178
Query 374 TGAAAAATAACAATGGAAACTGCGATGCAAAAGAAGCTGCTGATGAGATGGCGAA-CGAG 432
|||| || ||||||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 179 TGAAGAACAACAATGGAAACTGCGACGCAAAGGAAGCTGCTGATGAGATGGC-AAGCGAG 237
Query 433 GCGAAGAAGAAAGAACTGATTCTGAAATCCTCTGGTTATGTTAATGTAGAAGGATCTAAT 492
|| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 GCTAAGAAAAAAGAATTGATTCTGAAATCCTCTGGTTATGTTAATGTACAAGGATCTAAT 297
Query 493 AATTTAGCCTCTGTTTTCTCCAAACGCGGTGAAAAAGGCGTTAACCAAGATTGTGCACTC 552
|||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 298 AATTTAGCCTCTCTTTTCTCCAAACGCGGCGAAAAAGGCGTTAATCAGGATTGTGCACTC 357
Query 553 GTTTGGGAGGGATTTGGGTGCCAAGAGGACATGATCTTCTGCGGGATATTTGATGGACAC 612
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 358 GTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATCTTCTGCGGGATATTCGATGGACAC 417
Query 613 GGTCCATGGGGTCACTATGTAGCCAAACAAGTACGAAACTCAATGCCTTCGTCGCTTCTC 672
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 418 GGTCCATGGGGTCACTATGTAGCCAAACAAGTAAGAAACTCAATGCCTTTGTCGCTTCTT 477
Query 673 TGCAACTGGCAAAAGATTCTTGCACAGGCCACCCTAGAGCCCGAGCTTGACCTTGAAGGC 732
||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||
Sbjct 478 TGCAACTGGCAAAAGATTCTTGCTCAGGCCACTCTAGAACCCGAGCTCGACCTCGAAGGC 537
Query 733 TCTAATAAAAAACTCTCAAGATTCGACATATGGAAGCAATCCTATCTCAAAACATGTGCA 792
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 538 TCTAATAAAAAAATCTCAAGATTCGACATATGGAAGCAATCCTATCTAAAAACGTGTGCA 597
Query 793 ACGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTACAGCGGCACAACA 852
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 ACGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTATAGCGGCACAACA 657
Query 853 GCTCTAACCATTGTCAGACAGGGTGAAGTTATTTATGTCGCGAATGTAGGTGATTCAAGA 912
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 658 GCTCTAACCATTGTGAGACAGGGTGAAGTTATTTATGTAGCAAATGTAGGCGATTCAAGA 717
Query 913 GCGGTACTAGCCACGGTTTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCTCACCCTTGAT 972
||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 GCGGTACTAGCCATGGAGTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCTCACCCTCGAT 777
Query 973 TTCAAACCGAATCTACCACAGGAGAAGGAGCGGATAATTGGCTGCAAAGGGCGGGTTTTC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCAAACCGAATCTACCACAGGAGAAGGAGCGGATAATTGGCTGCAAAGGGCGGGTTTTC 837
Query 1033 TGTCTAGAAGATGAGCCGGGAGTCCACCGTGTGTGGCAACCGGACGCAGAAACACCGGGG 1092
|||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 838 TGTCTAGATGATGAGCCGGGAGTCCATCGTGTGTGGCAGCCAGACGCAGAAACACCGGGG 897
Query 1093 CTCGCAATGTCAAGAGCGTTCGGAGACTACTGTATCAAAGAGTATGGATTGGTCTCAGTC 1152
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 CTCGCAATGTCAAGAGCATTCGGAGACTACTGTATTAAAGAGTATGGATTGGTCTCAGTC 957
Query 1153 CCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAATCTTGGCTAGTGAT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 CCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAATCTTGGCCAGTGAT 1017
Query 1213 GGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATCGTCTCCTCGACGGCTGAG 1272
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1018 GGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATTGTCTCCTCAACGGCTGAG 1077
Query 1273 CGGCCTAAAGCGGCTAAGCGGTTAGTAGAGCAAGCGGTTCGGGCTTGGAAGAAAAAGAGA 1332
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CGGCCTAAGGCGGCTAAGCGATTAGTAGAGCAAGCGGTTCGGGCTTGGAAGAAAAAGAGA 1137
Query 1333 CGAGGATTCTCCATGGACGATATGTCTGTGGTCTGCCTTTTCCTCCATTCTTCTTCATCG 1392
||||||| ||||||||| |||||||| || |||||||| |||||||||||||||||||||
Sbjct 1138 CGAGGATACTCCATGGATGATATGTCAGTCGTCTGCCTCTTCCTCCATTCTTCTTCATCG 1197
Query 1393 TCATCTCTATCACAACATCATCATGCCACGAC--TTT-AAAGTAAAACTTTGCGTTGTAA 1449
|||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||
Sbjct 1198 TCATCTCTATCACAACATCATCATGCCATGACGATTTTAAAGTAAAACTTTGTGTTGTAA 1257
Query 1450 ATAG 1453
||||
Sbjct 1258 ATAG 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5