BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489543
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27880.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1149 0.0
> AT5G27880.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:9885908-9886744 FORWARD LENGTH=837
Length=837
Score = 1149 bits (622), Expect = 0.0
Identities = 791/866 (91%), Gaps = 37/866 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTCTTCAA-GCTCTTC--CA--CAC--CCACACCCAAATCCAAAAAACTCAAAGG 53
||||||||||||| | ||||| || | | ||||||||||||||||||| ||||||||
Sbjct 1 ATGTCTTCTTCAATG-TCTTCTGCAGGCTCTTCCACACCCAAATCCAAAAAGCTCAAAGG 59
Query 54 CATTGTTGTGGCCATGGAGAAGTCGAAAGAGAAGGCAACAAGGAGCACCAATCTGAAACT 113
||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 60 CATTGTTGTGGACATGGAGAAGTCGAAAGAGAAGGCAACAAGGAACACTATTCTGAAACT 119
Query 114 AGGTTCTCCTCAAGAGGTTACCTCTGAAAGGAGGTTTGAGAACTCTAGTTTTGGATCTAG 173
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 AGGTTCTCCTCAAGAGGTTACCTCTGAAAGGAGGATTGAGAACTCTAGTTTTGGATCTAG 179
Query 174 TGCTGTCCGAAGAGGAAGAGAGATCATGAAGTTTTATCCGTCCAAATCGAACAAGATCTA 233
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 180 TGCTGTCCGAAGAGGAAGAGAGATCATGAAGTTTTACCCGTCAAAATCAAACAAGATCTA 239
Query 234 CACTTGTCATTTTTGCAAGAAAGGATTCTCAACCTCTCAAGCCTTAGGTGGTCACCAGAA 293
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CACTTGTCATTTTTGCAAAAAAGGTTTCTCAACCTCTCAAGCCTTAGGTGGTCACCAGAA 299
Query 294 CGCGCACAAGCAAGAGCGGGAGTGGGACAAAAAGCGGAAGGAGATGCAAGCCGACTACCC 353
|||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct 300 CGCGCACAAGCAAGAGCGGGAGTGGGACAAAAAGCGGAAGGAGATGGAAGCTGAGTATCC 359
Query 354 TGGACTCGCCTTTTTTAACCCTTACCTTGATAAGCCTCACATTCTCTTAGGTGGGTATTC 413
||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 360 TGGACTCTCCTTTTTGAACCCTTTCCTTGATAAGCCTCACATTCTCTTAGGTGGTTATTC 419
Query 414 ACAAGATGCTTTATCAAATGAAAATCATCTTGGGATCACTCTTGATCCTTTTAAACGTTT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 ACAAGATGCTTTATCAAATGAAAATCATCTTGGGATCACTCTTGATCCTTTTAAACGCTT 479
Query 474 AATTTACCCATCTTTCAAGAGTGGGGTCATTGGAGGAATTGCGGATATGAACGTGGCTGT 533
|||||||||||||||||| || | || | | || |||| |||||||
Sbjct 480 AATTTACCCATCTTTCAA---TG----C---GG-G---T-----AT--GAACATGGCTGT 518
Query 534 AGTTCCTCGTGTGACTCCTACTCGCTTCTTCACCGGGAACACTAGTACCAATGGTTC-AG 592
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 519 AGTTCCTCGTGTCACTCCTACTCGCTTCTTCACCGGGAACACTAGTACCAATGGTTCTA- 577
Query 593 CTTCAAGGGTCCCTAATCCTTTACCATCCTACAACAACCTTTACCCATTAAACTCGAGAA 652
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 578 CTTCAAGGGTCCCTGATCCTTTACCATCCTACAACAACCTTTACCCATCAAACTCTAGAA 637
Query 653 ACGTTCTTCCTTTTCCTCCTTTTCAAACTACCAAACTTTCTAGCAATTTGGTTTCGCAAG 712
|||||||||||||||||||| |||||| ||||| |||||||||||||| || |||||||
Sbjct 638 ACGTTCTTCCTTTTCCTCCTCCTCAAACCACCAAGCTTTCTAGCAATTTCGTCTCGCAAG 697
Query 713 GAAACGGTTTGAGCGAGGAGAATTTCATCTCAAAGATTGGAACAAAGAACAATATTGTGG 772
|||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 698 GAAACGTTTTAAGCGAAGAGAATTTCATCTCAAAGATTGGAACAAA---CAATATTGTGG 754
Query 773 AGATtgatgatgatgatgatgatgatATCCAACCAGAAGAAGAAAAAACTAAAAGCGGGG 832
||||||||||||||||||||||| || || | |||||||||||||||||||||||||||
Sbjct 755 AGATTGATGATGATGATGATGAT-AT-TC-AGCCAGAAGAAGAAAAAACTAAAAGCGGGA 811
Query 833 GAATTGATTTATCTCTATCCCTTTGA 858
|||||||||||||| |||||||||||
Sbjct 812 GAATTGATTTATCTTTATCCCTTTGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5