BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489545
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1158 0.0
> AT5G27860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr5:9874824-9876464 REVERSE LENGTH=800
Length=800
Score = 1158 bits (627), Expect = 0.0
Identities = 748/805 (93%), Gaps = 13/805 (2%)
Strand=Plus/Plus
Query 1 TGTTTGATTTTTCCTCCCAACAATGGCGGCTTCATCATC-T--TCTTCCTCTGACGTCTC 57
|||||||||| ||||| |||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1 TGTTTGATTTGTCCTCTCAACAATGGCGGCTTCATCATCTTCGTCTTCCTCCGACGTCTC 60
Query 58 CTCTGACTCTTCAGACTCTCATCGTCGCCGTAAGGATCGCCGCCGTCACCGTAGAAACGA 117
|||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 61 CTCTGATTCTTCAGACTCTCATCGTCGCCGTAAGGATCGCCGTCATCATCGTAGAAACGA 120
Query 118 CCGAGACAGAGACTCGCTCAAAGTACGGAAGAAGAGTCGATCCACCTCGAAAAAACGCCG 177
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 121 TCGAGACAGAGACTCGCTCAAAGTACGGAAAAAGAGCCGATCCACCTCGAAAAAACGCCG 180
Query 178 TAGACGCCAGCATTCCTCCGATTCCTCTGATTCTTCTTACTCCGATTCATCCAGTGAGAG 237
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TAGACGCCAACACTCCTCCGATTCCTCTGATTCTTCTTACTCCGATTCCTCCAGTGAGAG 240
Query 238 CTCAGATAGTGAGCACGAGAGGTCACGAAGGCACAAGAAGCATGCAAAGCCAAAGAAGGC 297
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CTCAGATAGTGAGCATGAGAAGTCACGAAGGCACAAGAAGCATGAAAAGCCAAAGAAGGC 300
Query 298 TAAGGATAAGGAACGAAACAAGAGTCATCGTCATAAACGGCATAAGAACAGAGATAGAAA 357
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TAAGGATAAGGAACGAAGCAAGAGTCATCGTCATAAACGGCATAAGAACAGAGAAAGAAA 360
Query 358 GAAAGGGGAAGGAGAAGGAAGCAGCGGGCCTGTTAAACTATCAAAGTTTTTGAACCGTGA 417
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 361 GAAAGGGGAAGGAGAAGGAAGTAGCGGGCCTGTAAAACTATCAAAGTTTTTGAACCGCGA 420
Query 418 CAAAGAGGATGGTGAGCGTAGAAGTGCTGTTTCAGGGaaaaaaaTTCTGCTGAAGGTTGA 477
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAAGACGATGGTGAACGTAGAAGTGCTGTTTCAGGGAAAAAAATTCTGCTGAAGGTTGA 480
Query 478 CAAGTCCAAAGAGGACAAAGCTGCAGAGAGCAAAAGAAATGAACTACTTAAGTTCTTAAA 537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 CAAGTCCAAAGAGGACAAAGCTGCAGAGAGCAAAAGAAATGAACTGCTTAAGTTCTTAAA 540
Query 538 CGCAAGTTTTGACTAGTATTTTTCGCTTTTGTCTCCATGACAGGATCTCAAGAACAACAA 597
||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||| ||
Sbjct 541 CGCAAGTTTCGACTAGTATTTTTCGCTTTTGTCTCGATGACAGAATCTCAACAACAAGAA 600
Query 598 GAATGTAAGATGCTATATGATTAGATTCTAGTTTGCGTATCTGTTTGGTGATTCGGATGC 657
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 601 GAATGTAAGATGGTATTTGATTAGATTCTAGTTTCCGTATCTGTTTGGTGATTCAGATCC 660
Query 658 TTGTTTTGTTTATCCAGAGGACTAAGCCTGTCATGGATTTGAGTTGTTA-TTATAGC--C 714
||||||||||| ||||||||||||| ||||||||||||||| || ||| || || |
Sbjct 661 TTGTTTTGTTTTTCCAGAGGACTAATCCTGTCATGGATTTG--TT-TTACTTCTATTTTC 717
Query 715 AT-TTGAA-CTTATAAACTTTGTGTTATCGCACACTGTTCTTCTTGGAAACCCGAGAAAT 772
| || | |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGTTTAGTCTTA-AAG-TTTGTGTTATCGCACACTGTTCTTCTTGGAAACCCGAGAAAT 775
Query 773 GGTTACTGAGATTTTATCGGTGCGT 797
|||||||||||||||||| ||||||
Sbjct 776 GGTTACTGAGATTTTATCCGTGCGT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38780761484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5