BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489546
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27850.1 | Symbols: | Ribosomal protein L18e/L15 superfamil... 1107 0.0
AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:162... 704 0.0
> AT5G27850.1 | Symbols: | Ribosomal protein L18e/L15 superfamily
protein | chr5:9873152-9874598 FORWARD LENGTH=882
Length=882
Score = 1107 bits (599), Expect = 0.0
Identities = 700/748 (94%), Gaps = 10/748 (1%)
Strand=Plus/Plus
Query 1 CTCTCGCAGACGCAGCCATGGGTATCGATCTTATCGCCGGAGGTAAGAGTAAGAAGACAA 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 CTCTCGCAGACGCAGCCATGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCA 60
Query 61 AAAGGACTGCTCCAAAGTCCGATGATGTTTACCTCAAGCTTCTCGTCAAGCTTTACCGGT 120
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 61 AAAGGACTGCTCCTAAGTCCGATGATGTCTACCTAAAGCTTCTCGTCAAGCTTTACCGGT 120
Query 121 TTTTGGTGAGGAGATCTGAA-AGCAAGTTCAATGCTGTGATTCTCAAGAGGCTTTTCATG 179
||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||||
Sbjct 121 TTTTGGTGAGGAGATCT-AACAGCAACTTCAATGCTGTGATTCTGAAAAGGCTTTTCATG 179
Query 180 AGCAAAGTCAACAAAGCTCCTCTTTCGCTCTCTAGGCTTGTGGAGTTCATGACGGGCAAG 239
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 180 AGCAAAGTCAACAAAGCTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAG 239
Query 240 GAGGACAAGATTGCTGTGTTGGTTGGAACCATCACTGATGATTTGAGAGTTCATGAGATT 299
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GATGACAAGATTGCTGTGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATT 299
Query 300 CCTGCCATGAAAGTTACTGCCTTGAGGTTCACAGAGAGGGCTAGAGCTAGAATTGAGAAA 359
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 300 CCTGCCATGAAGGTTACTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAA 359
Query 360 GCTGGGGGAGAGTGCTTAACCTTTGACCAGCTTGCACTCAAAGCTCCATTGGGCCAGAAC 419
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 360 GCTGGTGGAGAGTGCTTAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAAC 419
Query 420 ACAGTTCTCCTTAGAGGACCAAAGAACTCTCGTGAAGCAGTGAAGCATTTTGGACCTGCT 479
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 420 ACAGTTCTTCTTAGAGGACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCT 479
Query 480 CCTGGTGTGCCACACAGTAGCACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAG 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTGGTGTGCCACACAGTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAG 539
Query 540 AAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGATA-ACT-TTGTTGTG- 596
|||||||||||||||||||||||||||||||||||||||||||| | | | || || ||
Sbjct 540 AAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGA-AGA-TGTT-TTCTGG 596
Query 597 TTTCGTTTTGCTTGGTTTCAGTATCGAATTTTTGGTAGGGAACACTGGTTCCTCTTTGCC 656
|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 597 TTTCGTTTTGCTTGGTTTAAGTATCGAAGTTTTGGTAGGGAACGCTGGTTCCTCTTTACC 656
Query 657 CTGATCGAGACATTGTTTTAAGTTCTGTTT--CTGTTCTTACGACAATTGGATATTTTGC 714
||| || |||| |||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct 657 CTGTTCCAGACTTTGTTTTAAGTTCTGTTTTTCTATTCTCAAGACAATTGGATATTTTGC 716
Query 715 TTTGTCTTTTAATCTTATTACTACTAGC 742
||||||||||||||||| ||||| ||||
Sbjct 717 TTTGTCTTTTAATCTTACTACTATTAGC 744
> AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:1621457-1623014
FORWARD LENGTH=857
Length=857
Score = 704 bits (381), Expect = 0.0
Identities = 518/583 (89%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 18 ATGGGTATCGATCTTATCGCCGGAGGTAAGAGTAAGAAGACAAAAAGGACTGCTCCAAAG 77
|||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 55 ATGGGTATTGATCTGATCGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAG 114
Query 78 TCCGATGATGTTTACCTCAAGCTT-CTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATC 136
|| |||||||| |||||||||||| || |||||||||||||||||| |||| |||||| |
Sbjct 115 TCTGATGATGTCTACCTCAAGCTTACT-GTCAAGCTTTACCGGTTTCTGGTAAGGAGAAC 173
Query 137 TGAA-AGCAAGTTCAATGCTGTGAT-TCTCAAGAGGCTTTTCATGAGCAAAGTCAACAAA 194
| || ||||||||||||| |||||| | | ||||||||||||||||||||||||||||||
Sbjct 174 T-AATAGCAAGTTCAATGGTGTGATAT-TGAAGAGGCTTTTCATGAGCAAAGTCAACAAA 231
Query 195 GCTCCTCTTTCGCTCTCTAGGCTTGTGGAGTTCATGACGGGCAAGGAGGACAAGATTGCT 254
||||||||||| || ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 232 GCTCCTCTTTCTCTATCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCC 291
Query 255 GTGTTGGTTGGAACCATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAAGTT 314
|| ||||||||||| || |||||||||||||| || || |||||||| |||||||||||
Sbjct 292 GTCTTGGTTGGAACTATAACTGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTG 351
Query 315 ACTGCCTTGAGGTTCACAGAGAGGGCTAGAGCTAGAATTGAGAAAGCTGGGGGAGAGTGC 374
||||||||||||||||||||||| || || ||| | |||||||||||||| || || |||
Sbjct 352 ACTGCCTTGAGGTTCACAGAGAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGC 411
Query 375 TTAACCTTTGACCAGCTTGCACTCAAAGCTCCATTGGGCCAGAACACAGTTCTCCTTAGA 434
||||||||||||||||| || |||| ||||||||||||||||||||| ||||| ||||||
Sbjct 412 TTAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGA 471
Query 435 GGACCAAAGAACTCTCGTGAAGCAGTGAAGCATTTTGGACCTGCTCCTGGTGTGCCACAC 494
||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 472 GGACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACAC 531
Query 495 AGTAGCACT--AAGCCATATGTTAGG-CATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGA 551
||| |||| |||||||||||| || | |||||||||||||| ||||| || ||||||
Sbjct 532 AGT--CACTCCAAGCCATATGTTCGGGCC-AAGGGAAGGAAGTTCGAGAAGGCCAGAGGA 588
Query 552 AAGCGAAAGAGTCGTGGATTCAAGGTCTAAGATAACTTTGTTG 594
||| | |||||||||||||||||||| ||||| || || ||||
Sbjct 589 AAGAGGAAGAGTCGTGGATTCAAGGTTTAAGA-AAGTT-GTTG 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5