BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489548
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27840.2 | Symbols: TOPP8 | Calcineurin-like metallo-phospho... 1788 0.0
AT3G05580.1 | Symbols: | Calcineurin-like metallo-phosphoester... 1194 0.0
> AT5G27840.2 | Symbols: TOPP8 | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr5:9862924-9865038 REVERSE
LENGTH=1648
Length=1648
Score = 1788 bits (968), Expect = 0.0
Identities = 1093/1151 (95%), Gaps = 18/1151 (2%)
Strand=Plus/Plus
Query 1 TTTTAAGACAAAATAGATTTGTAAACTTCTGGGCTCTCTTCGTTTGACCCACATTTTCTC 60
||||||||||||||||| || | ||||| |||||| |||||||||||||||||||
Sbjct 6 TTTTAAGACAAAATAGA-TT-T---CTTCT----TCTCTTTGTTTGACCCACATTTTCTC 56
Query 61 GGGAAAAAA-TCGTCTGA-TTTCTCCGATCGGT-TCTTCATTGATCGGAAAACCAACCAC 117
|||||||| |||||| | ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 57 TGGAAAAAATTCGTCT-ACTTTCTCCGATC-GTCTCTTCATTGATCGGAAAACCAACAAC 114
Query 118 GACCCATTATTCCTCGCCTGTTTCTGGCGCAAACCCTTGTATCAA-TTTTGGATTTTGGT 176
||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 115 GACCCATTATTCCTCTCCTGTTTCTGGCGCAAACCCTTGTAGCAAGTTTT-GATTTTGGT 173
Query 177 GAGAAAA-A-TTTAGGGATCTGAAGAGAAAGAACACGATGATGACGAGTATGGAAGGGAT 234
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAGAAAATATTTTAGGGATCTGAAGAGAAAGAACACGATGATGACGAGTATGGAAGGGAT 233
Query 235 GGTGGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGTGGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAA 293
Query 295 ACAGGTTCAGCTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACAGGTTCAGCTTTCCGAGAGCGAGATTCGTCAACTCTGCTTTAACGCTCGTCAAATCTT 353
Query 355 CCTCTCTCAACCTAATCTTCTCGATCTCCATGCCCCAATTCGTATCTGTGGTGATATCCA 414
|||||||||||||||||| || |||||||||||||||||||| ||||| |||||||| ||
Sbjct 354 CCTCTCTCAACCTAATCTCCTTGATCTCCATGCCCCAATTCGCATCTGCGGTGATATTCA 413
Query 415 TGGCCAGTATCAAGATCTTTTGAGGTTATTTGAATACGGAGGCTATCCTCCTTCAGCAAA 474
||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 414 TGGTCAATATCAAGATCTTTTGAGGTTGTTTGAATACGGAGGTTATCCTCCTTCAGCAAA 473
Query 475 CTATCTATTCCTTGGTGATTACGTTGACAGAGGCAAGCAAAGTCTTGAGACCATATGTTT 534
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 474 CTATCTATTCCTTGGTGATTACGTTGACAGAGGCAAACAAAGTCTTGAGACCATATGTTT 533
Query 535 GCTTCTTGCTTACAAGATTCGGTATCCGTCGAAGATATATCTGTTGAGAGGGAACCATGA 594
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 534 GCTTCTTGCTTACAAGATACGGTACCCATCGAAGATATATCTGTTGAGAGGGAACCATGA 593
Query 595 GGATGCTAAGATCAATAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTTAATGT 654
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 GGATGCTAAGATCAACAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTCAATGT 653
Query 655 ACGACTTTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCCGTAGCTGCACTCATTGA 714
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 654 ACGACTCTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCTGTAGCTGCACTTATTGA 713
Query 715 CGAGAAGATACTGTGTATGCACGGTGGGTTGTCACCAGATTTGGACAATTTGAATCAGAT 774
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 714 TGAGAAGATACTGTGTATGCACGGTGGTTTGTCACCAGATTTGGATAATTTGAATCAGAT 773
Query 775 TCGAGAGATTCAGCGGCCTACAGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTG 834
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 TCGAGAGATTCAAAGGCCTATTGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTG 833
Query 835 GTCAGATCCTGATCAGAAGATTGAAGGGTGGGCTGATAGTGATCGAGGTATCTCTTGCAC 894
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 GTCAGATCCTGATCAGAAGATTGAAGGTTGGGCTGATAGTGATCGAGGTATCTCTTGCAC 893
Query 895 TTTTGGAGCCGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCG 954
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTTTGGAGCTGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCG 953
Query 955 AGGACATCAGGTAGTGGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGAT 1014
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGGCCATCAGGTAGTAGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGAT 1013
Query 1015 ATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCATTATTAAGCGTGGA 1074
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1014 ATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCGTTATTAAGCGTTGA 1073
Query 1075 TGAGTCTCTTGTTTGCTCCTTTGAGATTATGAAACCCGCCCCAGCTTCAAGCAGTCATCC 1134
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1074 CGAGTCTCTTGTATGTTCCTTTGAGATTATGAAACCAGCCCCAGCTTCAAGCAGTCATCC 1133
Query 1135 TCTCAAGAAGG 1145
|||||||||||
Sbjct 1134 TCTCAAGAAGG 1144
Score = 327 bits (177), Expect = 1e-88
Identities = 281/326 (86%), Gaps = 28/326 (9%)
Strand=Plus/Plus
Query 1144 GGTACCGAAAATGGGGAAGTCTTGAATTTCTAGTtctctctctctctctGT-TCCAC--T 1200
||||||||| ||||||||||||||||| ||||| || |||||| | || | | ||| |
Sbjct 1237 GGTACCGAAGATGGGGAAGTCTTGAATATCTAG-TC-CTCTCTATGTCAATAT-CACGGT 1293
Query 1201 TCCACAGCTCAAGCTAGGCAAAAGATTCAGACTGTCATTATAACTGTGTTTGTGTCTCCA 1260
||||||||||||||||||| ||||||| || |||||||| |||||||| ||||||||||
Sbjct 1294 TCCACAGCTCAAGCTAGGCTCAAGATTCTGAGTGTCATTACAACTGTGTCTGTGTCTCCA 1353
Query 1261 GTTATGTGTTGAATGCAATGAAGAACCCAAAGGGTACTTA----GTC-T----------- 1304
||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1354 ATTATGGGTTGAATGCAATGAAGAACCCAAAGGGTACTTACTTAGTCATCAAACAACTTC 1413
Query 1305 -GTaaaaaaccaaaaaa-gtgagaaaacaaaaaCACACTTCGTTTTCTTTGTATAGATGC 1362
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1414 TGTAAAAAAACAAAAAAAGTGAGAAAACAAAAACACACTTTGTTTTCTTTGTATAGATGC 1473
Query 1363 AGAA--TGATCTGtcttctgcttctggggattttatctccttattagtctct-ttt-ctt 1418
|||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1474 AGAAAATGATCTGTCTTCTGCTTCTGGAGATTTTATCTCCTTATTAGTCTCTCTTTTCTT 1533
Query 1419 tcttcttttagcccttttagtttaat 1444
||||||||||||||||||||||||||
Sbjct 1534 TCTTCTTTTAGCCCTTTTAGTTTAAT 1559
> AT3G05580.1 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr3:1617847-1620120 REVERSE LENGTH=1596
Length=1596
Score = 1194 bits (646), Expect = 0.0
Identities = 923/1055 (87%), Gaps = 26/1055 (2%)
Strand=Plus/Plus
Query 118 GACCCATTATTCCTCGCCTGTTTCTGGCGCAAACCCTTGTATCAATTTTGGATTTTGGTG 177
|||||||| || |||||||| || ||||||||| || | ||||||||| |||||
Sbjct 197 GACCCATTGTTTCTCGCCTGATT-TGGCGCAAA-CC------C--TTTTGGATTCTGGTG 246
Query 178 AGAAAAATTTAGGGATCTGAAGAGAAAGAACACGATGATGACGAGTATGGAAGGGATGGT 237
| |||| || |||||| |||| ||| | |||||||||||||||||||||||| |
Sbjct 247 A-AAAAGGTT-GGGATC---AGAG---GAAGA--ATGATGACGAGTATGGAAGGGATGAT 296
Query 238 GGAGAAAGGAGTATTGGATGATATTATAAGAAGATTGTTAGAAGGTAAAGGAGGCAAACA 297
||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 297 GGAGATGGGTGTATTGGATGATATTATAAGGAGATTGTTGGAAGGTAAAGGAGGTAAACA 356
Query 298 GGTTCAGCTTTCCGAGAG-CGAGATTCGTCAACTCTGCTTTAACGCTC-GTCAAATCTTC 355
|||||||||||| ||| | |||||| |||||||| ||| ||||||| | | |||||||||
Sbjct 357 GGTTCAGCTTTCGGAG-GTCGAGATCCGTCAACTTTGCGTTAACGC-CAGACAAATCTTC 414
Query 356 CTCTCTCAACCTAATCTTCTCGATCTCCATGCCCCAATTCGTATCTGTGGTGATATCCAT 415
|| ||||| |||||||||||||| || |||||||| ||||| ||||| ||||||||||||
Sbjct 415 CTTTCTCAGCCTAATCTTCTCGAGCTTCATGCCCCCATTCGCATCTGCGGTGATATCCAT 474
Query 416 GGCCAGTATCAAGATCTTTTGAGGTTATTTGAATACGGAGGCTATCCTCCTTCAGCAAAC 475
|| ||||| ||||||||| ||||| |||| |||||||||||||||||||||||||| |||
Sbjct 475 GGACAGTACCAAGATCTTCTGAGGCTATTCGAATACGGAGGCTATCCTCCTTCAGCGAAC 534
Query 476 TATCTATTCCTTGGTGATTACGTTGACAGAGGCAAGCAAAGTCTTGAGACCATATGTTTG 535
||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 535 TATCTCTTCCTCGGCGATTACGTTGATAGAGGCAAGCAAAGTCTTGAAACAATATGTTTA 594
Query 536 CTTCTT-GCTTACAAGATTCGGTATCCGTCGAAGATATATCTGTTGAGAGGGAACCATGA 594
| |||| |||||||| || ||||| || || ||||||| ||| |||||||| ||||||||
Sbjct 595 C-TCTTGGCTTACAAAATCCGGTACCCATCCAAGATATTTCTCTTGAGAGGAAACCATGA 653
Query 595 GGATGCTAAGATCAATAGGATTTACGGGTTTTATGACGAGTGCAAACGGAGATTTAATGT 654
|||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 654 AGATGCTAAGATCAACAGGATTTACGGGTTCTATGACGAATGCAAACGGAGGTTTAATGT 713
Query 655 ACGACTTTGGAAGGTGTTTACTGATTGCTTCAACTGTTTACCCGTAGCTGCACTCATTGA 714
||| ||||||||| | || || ||||||||||||||||| || |||||||| ||||||||
Sbjct 714 ACGGCTTTGGAAGATATTCACCGATTGCTTCAACTGTTTGCCGGTAGCTGCTCTCATTGA 773
Query 715 CGAGAAGATACTGTGTATGCACGGTGGGTTGTCACCAGATTTGGACAATTTGAATCAGAT 774
||||||||| || |||||||| ||||| |||||||| || ||||| || ||| |||||
Sbjct 774 CGAGAAGATCCTATGTATGCATGGTGGATTGTCACCGGAATTGGAAAACTTGGGGCAGAT 833
Query 775 TCGAGAGATTCAGCGGCCTACAGAGATTCCAGACAGTGGTCTTCTTTGTGATTTACTTTG 834
||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 834 TCGGGAGATTCAAAGGCCTACAGAGATTCCAGACAATGGTCTTCTTTGTGATTTACTTTG 893
Query 835 GTCAGATCCTGATCAGAAGATTGAAGGGTGGGCTGATAGTGATCGAGGTATCTCTTGCAC 894
||| |||||||||||||||| |||||||||| ||||||| |||||||||||||| |||||
Sbjct 894 GTCTGATCCTGATCAGAAGAATGAAGGGTGGACTGATAGCGATCGAGGTATCTCCTGCAC 953
Query 895 TTTTGGAGCCGATAAAGTCGCTGAGTTCTTGGATAAGAATGATCTTGACCTCATTTGCCG 954
|||||||||||| ||||||||| || ||||||||||||||||| || ||||||||| |
Sbjct 954 GTTTGGAGCCGATGTAGTCGCTGACTTTTTGGATAAGAATGATCTCGATCTCATTTGCAG 1013
Query 955 AGGACATCAGGTAGTGGAAGACGGGTATGAGTTTTTCGCAAAACGGAGATTAGTCACGAT 1014
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1014 AGGCCATCAGGTAGTGGAAGATGGGTATGAGTTTTTCGCAAAACGGAGGTTAGTCACAAT 1073
Query 1015 ATTCTCAGCTCCAAACTATGGTGGGGAGTTTGACAACGCTGGTGCATTATTAAGCGTGGA 1074
||||||||||||||||||||| || ||||||||||| || ||||||||||| ||||||||
Sbjct 1074 ATTCTCAGCTCCAAACTATGGAGGAGAGTTTGACAATGCCGGTGCATTATTGAGCGTGGA 1133
Query 1075 TGAGTCTCTTGTTTGCTCCTTTGAGATTATGAAACCCGCCCCAGCTTCAAGCAGTCATCC 1134
| | ||||| |||||||||||||||||| ||||||| || |||||||| |||| | ||||
Sbjct 1134 TCAATCTCTCGTTTGCTCCTTTGAGATTCTGAAACCGGCTCCAGCTTCTAGCACTAATCC 1193
Query 1135 TCTCAAGAAGGTACCGAAAATGGGGAAGTCTTGAA 1169
|||||||||||||||||||||||||||||||||||
Sbjct 1194 TCTCAAGAAGGTACCGAAAATGGGGAAGTCTTGAA 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5