BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489549
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27830.4 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1454 0.0
> AT5G27830.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region
(InterPro:IPR018143). | chr5:9861176-9862822 FORWARD LENGTH=1076
Length=1076
Score = 1454 bits (787), Expect = 0.0
Identities = 951/1025 (93%), Gaps = 32/1025 (3%)
Strand=Plus/Plus
Query 39 ATCAGTGAAGAG-AAAGATGGGAAGATGTTTATCGAAGAGGGTGTTTTTGATTCATAGTC 97
|||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 54 ATCAGTGAAGAGAAAAGATGGGAAGATGTTTAACGAAGAAGGTGTTTTTGATTCAGAGTC 113
Query 98 CGATCTTGTTTCTTCATCTCCTGATCTCTTTATCGT-----C--------C-GGTGCAGT 143
|||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 114 CGATCTTGTTTCTTCATCTCCTGATCTCTTTATCGTCCGAACAATGTTTTCAGGTGCAGT 173
Query 144 GAAACCAGATTTGAAAGGAGTATGTGTTTCTAAAGGAGGGCGGTTTCCGCCTTATGAATC 203
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 174 GAAACCGGATTTGAAAGGAGTATGTGTTTCTAAAGGAGGGAGGTTTCCGCCATATGAGTT 233
Query 204 AGAAGGAAAGCCTCCTAAATCTGTTGGTAGAGGATCCAAGGATCTTACTCTGTGCCGGGT 263
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 234 GGAAGGGAAGCCTCCTAAGTCTGTTGGTAGGGGATCCAAGGATCTTACTCTGTGCCGGGT 293
Query 264 GTTTCGTAAAAGGACTTGTTGTACTGCTGTTCAGACAAACCCGGCTTTCGTAGCTGTCAG 323
||||||||||| |||||||||| || |||||||||| |||||||||||||||||||| ||
Sbjct 294 GTTTCGTAAAAAGACTTGTTGTTCTTCTGTTCAGACTAACCCGGCTTTCGTAGCTGTTAG 353
Query 324 AAACTTGGCTACTTATGGAGAAGCTAGTCAAGAATGCTTGGAGTTGTTTGAGTTATTGGA 383
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AAACCTGGCTACTTATGGAGAAGCTAGTCAAGAATGCTTGGAGTTGTTTGAGTTATTGGA 413
Query 384 GTGTTCAATCTGTAACCCAAATGTTGGAATTCAACCAGGTCCTCCTCGTATTTGCGCCTC 443
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 414 GTGTTCAATCTGTAACCCAAATGTTGGAATTCAACCGGGTCCTCCTCGTATATGCGCCTC 473
Query 444 GTTTTGTGACAGAGTCTTTGAAGCATGCAAAGATGCATACTTTGCCAGTAATGCACTTAC 503
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 474 GTTCTGTGACAGAGTCTTTGAAGCCTGCAAAGATGCATACTTTGCCAGTAATGCACTTAA 533
Query 504 ACGGGTGATTGGCCCTTGTGGAGTAAACGATGACATAATCTGCGTTAAGGCCTCAAATTG 563
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 534 ACGGGTGATTGGCCCTTGTGGAGTAAACGACGACATAATCTGCATTAAGGCCTCAAATTG 593
Query 564 GGAATCCAATGGCACAGCATTCTGTGAAGCAGCTGGTTTTGCTGTTCAAACAAATCATGA 623
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 594 GGAATCCAATGGCACATCATTCTGTGAAGCAGCTGGTTTTGCTGTTCAAAGGAATGATGA 653
Query 624 TTCTAGAGAAAAACCATGCTACGGAAGCAAAGCAAGTCTAGAATCAGTAGTGGAATCATG 683
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTCTAGAGAAAAACCGTGCTACGGAAGCAAAGCAAGTCTAGAATCAGTAGTGGAATCATG 713
Query 684 GTCAAGAGACTCTCGAAAGGAGACGCCTTTAAAGACTGAGACTTTGTCATGTTTTAAAGA 743
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 GTCAAGAGACTCTCGAAAGGAGACGCCTTTAAAAACTGAGACTTTGTCATGTTTTAAAGA 773
Query 744 TCTTCTCCAATGGGTTCGGGAAATGACAACGATTCA-AAAGATTTCTTTGGGAATGTCGT 802
|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 774 TCTTCTCCAATGGGTTCGCGAAATGACAACGATTCAGAAA-ATTTCTTTGGGAATGTCGT 832
Query 803 TTCTTGTAGCAGGAATGTT-TT--T--G--A-T-CAGGCAATCTAATAACCGTAATCAGA 853
||||| ||||||||||||| || | | | | ||||||||||||||||||||||||||
Sbjct 833 TTCTTATAGCAGGAATGTTCTTGATCAGGTACTACAGGCAATCTAATAACCGTAATCAGA 892
Query 854 AGCAGCGGCTAGCTGCGATTCAGAGGACCGCTAGAAGATTGGGAGGGAACGGGAATGGGA 913
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 893 AGCAGCGACTAGCTGCGATTCAGAGGACCGCTAGAAGATTGAGAGGGAACGGGAACGGGG 952
Query 914 ATTCATACAGTGCAGCTATAAATAGAAGAACAAGCTCTGATTAAGGTTATCGAAGGA-TA 972
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 953 ATTCATACAGTGCAGCTATAAATAGAAGAACAAGCTCTGATTAAGCTTATGGAATGAATA 1012
Query 973 TTTTAAAGCAGTAGTTTGTAAAAGACCATGAATTTA-CTGTTACCAAAAGTAAAGGCTTG 1031
||||| |||||||||||||||| ||||||||||| |||||| ||| ||||||||||||
Sbjct 1013 TTTTA---CAGTAGTTTGTAAAAG-CCATGAATTTAACTGTTATCAATAGTAAAGGCTTG 1068
Query 1032 TCTCA 1036
|||||
Sbjct 1069 TCTCA 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5