BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489552 Length=531 Score E Sequences producing significant alignments: (Bits) Value AT5G27770.1 | Symbols: | Ribosomal L22e protein family | chr5:... 839 0.0 AT3G05560.1 | Symbols: | Ribosomal L22e protein family | chr3:... 453 7e-127 > AT5G27770.1 | Symbols: | Ribosomal L22e protein family | chr5:9835885-9837341 FORWARD LENGTH=700 Length=700 Score = 839 bits (454), Expect = 0.0 Identities = 509/535 (95%), Gaps = 6/535 (1%) Strand=Plus/Plus Query 1 CCATCTTCTTCAACTTCAGAGGTG-AAAATGAGTCGTGGTAACGCAGCAGCAACTAAGGG 59 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 70 CCATCTTCTTCAACTTCAGAGGTGAAAAATGAGTCGTGGTAACGCAGCAGCAGCTAAGGG 129 Query 60 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCGAAGCCTGTGGATGATAAGATTAT 119 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 130 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCTAAACCTGTGGATGATAAGATTAT 189 Query 120 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGG 179 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 190 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGG 249 Query 180 TGCTCTTGGTGATTCTGTTTCCATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGA 239 ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| Sbjct 250 TGCTCTTGGTGATTCTGTTTCTATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGA 309 Query 240 TGGTCAATTCTCCAAGAGATATCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAA 299 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || Sbjct 310 TGGTCAATTCTCCAAGAGGTATCTTAAGTACTTGACAAAGAAGTACTTGAAGAAGCACAA 369 Query 300 CGTGAGGGATTGGCTCAGAGTGATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAG 359 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 370 CGTGAGGGATTGGCTTAGAGTGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAG 429 Query 360 GTACTTCAACATTGCCGAGAACGAAGCAGAGGAAGAAGATTAAAAAACGGTTTTGGGCTA 419 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| Sbjct 430 GTACTTCAACATTGCCGAGAACGAAGCTGAGGAAGAAGATTAAAAC-CGGTTTTGGTCTA 488 Query 420 GTGCTATATCCTCTGTTCCTCTCTTTCTGTTGGTTTGGTTTTGATTCTTCAATTTTGTGT 479 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 489 GTGCTATATCCTCTGTTCCTCTATTTCTGTTGGTTTGGTTTTGATTCTTCAGTTTTGTGT 548 Query 480 TAGATATTATT-T--AGTTTGATTGAAGTAATACTCTTTTCCTTTTGTTGTTGCG 531 ||||||||||| | |||||||||||||||||||||||| | ||||||||||||| Sbjct 549 TAGATATTATTATGTAGTTTGATTGAAGTAATACTCTTTGC-TTTTGTTGTTGCG 602 > AT3G05560.1 | Symbols: | Ribosomal L22e protein family | chr3:1614178-1615506 FORWARD LENGTH=783 Length=783 Score = 453 bits (245), Expect = 7e-127 Identities = 338/383 (88%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 24 GAAAATGAGTCGTGGTA-ACGCAGCAGCAACTAAGGGAAAGAAGAAGGGAGTTTCCTTCA 82 ||||||||||||||| | ||||| | | |||||||||||||||||||||||||||| Sbjct 103 GAAAATGAGTCGTGG-AGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCA 161 Query 83 CTATCGATTGTTCGAAGCCTGTGGATGATAAGATTATGGAGATTGCTT-CTTTAGAGAAG 141 | || |||||||| |||||||| ||||| ||||| ||||||||||||| | || |||||| Sbjct 162 CCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTT-GAGAAG 220 Query 142 TTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTCC 201 ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| | Sbjct 221 TTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACA 280 Query 202 ATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGATGGTCAATTCTCCAAGAGATA- 260 ||||| ||||| ||||||||||| ||||||||| | ||||| |||||||||||||| || Sbjct 281 ATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTAT 340 Query 261 TCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAACGTGAGGGATTGGCTCAGAGT 320 | | ||||||||||||||||||||| |||||||||| || || ||||||||||||||||| Sbjct 341 TTG-AAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGT 399 Query 321 GATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGAA 380 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 400 GATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAA 459 Query 381 CGAAGCAGAGGAAGAAGATTAAA 403 ||||| |||||| ||||| |||| Sbjct 460 CGAAGGAGAGGAGGAAGACTAAA 482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25418478382 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5