BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489552
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27770.1 | Symbols: | Ribosomal L22e protein family | chr5:... 839 0.0
AT3G05560.1 | Symbols: | Ribosomal L22e protein family | chr3:... 453 7e-127
> AT5G27770.1 | Symbols: | Ribosomal L22e protein family | chr5:9835885-9837341
FORWARD LENGTH=700
Length=700
Score = 839 bits (454), Expect = 0.0
Identities = 509/535 (95%), Gaps = 6/535 (1%)
Strand=Plus/Plus
Query 1 CCATCTTCTTCAACTTCAGAGGTG-AAAATGAGTCGTGGTAACGCAGCAGCAACTAAGGG 59
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 70 CCATCTTCTTCAACTTCAGAGGTGAAAAATGAGTCGTGGTAACGCAGCAGCAGCTAAGGG 129
Query 60 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCGAAGCCTGTGGATGATAAGATTAT 119
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 130 AAAGAAGAAGGGAGTTTCCTTCACTATCGATTGTTCTAAACCTGTGGATGATAAGATTAT 189
Query 120 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGG 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 190 GGAGATTGCTTCTTTAGAGAAGTTTCTTCAGGAGAGGATTAAGGTTGGTGGTAAAGCTGG 249
Query 180 TGCTCTTGGTGATTCTGTTTCCATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGA 239
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||
Sbjct 250 TGCTCTTGGTGATTCTGTTTCTATCACTCGTGAGAAGAGCAAGATCACTGTCACTGCTGA 309
Query 240 TGGTCAATTCTCCAAGAGATATCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAA 299
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 310 TGGTCAATTCTCCAAGAGGTATCTTAAGTACTTGACAAAGAAGTACTTGAAGAAGCACAA 369
Query 300 CGTGAGGGATTGGCTCAGAGTGATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAG 359
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 370 CGTGAGGGATTGGCTTAGAGTGATTGCGGCGAACAAGGACCGTAACCTCTATGAGTTGAG 429
Query 360 GTACTTCAACATTGCCGAGAACGAAGCAGAGGAAGAAGATTAAAAAACGGTTTTGGGCTA 419
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 430 GTACTTCAACATTGCCGAGAACGAAGCTGAGGAAGAAGATTAAAAC-CGGTTTTGGTCTA 488
Query 420 GTGCTATATCCTCTGTTCCTCTCTTTCTGTTGGTTTGGTTTTGATTCTTCAATTTTGTGT 479
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 489 GTGCTATATCCTCTGTTCCTCTATTTCTGTTGGTTTGGTTTTGATTCTTCAGTTTTGTGT 548
Query 480 TAGATATTATT-T--AGTTTGATTGAAGTAATACTCTTTTCCTTTTGTTGTTGCG 531
||||||||||| | |||||||||||||||||||||||| | |||||||||||||
Sbjct 549 TAGATATTATTATGTAGTTTGATTGAAGTAATACTCTTTGC-TTTTGTTGTTGCG 602
> AT3G05560.1 | Symbols: | Ribosomal L22e protein family | chr3:1614178-1615506
FORWARD LENGTH=783
Length=783
Score = 453 bits (245), Expect = 7e-127
Identities = 338/383 (88%), Gaps = 6/383 (2%)
Strand=Plus/Plus
Query 24 GAAAATGAGTCGTGGTA-ACGCAGCAGCAACTAAGGGAAAGAAGAAGGGAGTTTCCTTCA 82
||||||||||||||| | ||||| | | ||||||||||||||||||||||||||||
Sbjct 103 GAAAATGAGTCGTGG-AGGTGCAGCTGTTGCCAAGGGAAAGAAGAAGGGAGTTTCCTTCA 161
Query 83 CTATCGATTGTTCGAAGCCTGTGGATGATAAGATTATGGAGATTGCTT-CTTTAGAGAAG 141
| || |||||||| |||||||| ||||| ||||| ||||||||||||| | || ||||||
Sbjct 162 CCATTGATTGTTCAAAGCCTGTCGATGACAAGATCATGGAGATTGCTTCCCTT-GAGAAG 220
Query 142 TTTCTTCAGGAAAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCTGTTTCC 201
||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 221 TTTCTTCAGGAGAGGATCAAGGTCGGTGGCAAAGCTGGTGCACTTGGTGATTCTGTCACA 280
Query 202 ATCACTCGTGAAAAGAGCAAGATTACTGTCACTTCTGATGGTCAATTCTCCAAGAGATA- 260
||||| ||||| ||||||||||| ||||||||| | ||||| |||||||||||||| ||
Sbjct 281 ATCACACGTGAGAAGAGCAAGATCACTGTCACTGCAGATGGCCAATTCTCCAAGAGGTAT 340
Query 261 TCGCAAGTACTTGACAAAGAAGTACTTGAAGAAGCATAACGTGAGGGATTGGCTCAGAGT 320
| | ||||||||||||||||||||| |||||||||| || || |||||||||||||||||
Sbjct 341 TTG-AAGTACTTGACAAAGAAGTACCTGAAGAAGCACAATGTAAGGGATTGGCTCAGAGT 399
Query 321 GATTGCGGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCCGAGAA 380
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 400 GATTGCAGCAAACAAGGACCGTAACCTCTATGAGTTGAGGTACTTCAACATTGCTGAGAA 459
Query 381 CGAAGCAGAGGAAGAAGATTAAA 403
||||| |||||| ||||| ||||
Sbjct 460 CGAAGGAGAGGAGGAAGACTAAA 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5