BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489554
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27750.1 | Symbols: | F-box/FBD-like domains containing pro... 1962 0.0
AT1G13780.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1096 0.0
> AT5G27750.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:9828237-9830161 FORWARD LENGTH=1652
Length=1652
Score = 1962 bits (1062), Expect = 0.0
Identities = 1372/1517 (90%), Gaps = 40/1517 (3%)
Strand=Plus/Plus
Query 2 TTTATCACTTAGCCTCTGAAGCCAGAACTCCGGTCGATAATTCGCCGGAGAATCTAATCC 61
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 14 TTTACCACTTAGCCTCTGACGCCAGAACTCCGGTCGATAATTCGCCGGAGAATCAAATCC 73
Query 62 ACGGGTTTTGTGTCTCGTGATGCCTGGGTTTGATAGAATCAGCGAATTACCGGAATCTTT 121
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 74 ACGGGTTTTGTGTCTCGTGATGCCTGGGTTCGATAGAATTAGCGAATTACCGGAATCTCT 133
Query 122 GATTACTCAAATACTCTTATGCCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GATTACTCAAATACTCTTATGCCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATC 193
Query 182 TACTAGATGGAAGAATCTATGGCTAAATGTTCCCGGACTTGACTTGAAC-TGCCGTGATT 240
||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 194 GACTAGGTGGAAGAATCTATGGCTAAATGTTCCCGGACTTGACTT-AACTTGCAGTGATT 252
Query 241 TACCTGATCAAGATGAAGAATATGAAGAAGTGTTTATTAACTTCATCGACAGGTTTTTAG 300
| ||| | ||||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 253 TCCCTTTTGAAGATGAAGAATATGAACAAGTGTTCATTAACTTCATCGACAGGTTTCTAG 312
Query 301 AGTTTAATCCTGAGTCACGCCTGCAAAAATTCAAGGTAGATTACAGTAGGCGTGAGATAC 360
||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 313 AGTTTAATCCTGAGTCACGCCTGCAAACATTCGAGGTAGATTACAAAAGGCGTGAGATAC 372
Query 361 TTGGGTTCAAGGATCGGATCGGTACAGTGATTAACCGCGGAATTCGACTTCTTGATGCTG 420
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 373 GCGGGTTCAAGGATCGGATCGGTACAGCGATTAACCGCGGAATTCGACTTCTAGATGCTG 432
Query 421 TGAGTAGTA-C-TGAATATCGAGAGGATGACGGCTTTATGTATCCTTATTTCGAGTTCAT 478
||||||||| | || ||| | ||||| || || |||||||||||||||| ||||||||
Sbjct 433 TGAGTAGTACCATG--TATTGGGAGGAGGAATGCATTATGTATCCTTATTTGGAGTTCAT 490
Query 479 GCCTCTGAATCTGTTTACGAGCAAGACATTGGTTTCTTTAAAGCTCTCGTG-TTCGGGTC 537
|||||||||||| ||||| |||||||| |||||| ||||||||||| || | ||||| ||
Sbjct 491 GCCTCTGAATCTCTTTACAAGCAAGACGTTGGTTACTTTAAAGCTC-CGGGATTCGGCTC 549
Query 538 TTAGGGATCCGGGTTTTG-TTTCTATGCCTTGTCTTAAAG-TCATGTTTCTTCAG-GAAA 594
||| |||||||| |||| ||||||||||||||||| ||| ||||| |||||| | |||
Sbjct 550 TTAACGATCCGGG-TTTGCTTTCTATGCCTTGTCTT-AAGTTCATGATTCTTC-GTGAAG 606
Query 595 TTCGATGGTCTGGTACTATGCA-TCTTGAAAAGCTTGTCTCTGGATGTCCTGTTCTTGAA 653
|||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 607 TTCGATGGTCTGGTACCATG-AGTCTTGAGAAGCTTGTCTCTGGATGTCCTGTTCTTGAA 665
Query 654 GAACTGACCTTGGTAAGGTATCTTGATGA-G-GATGAAT--TG--G-TG-GTTG-CGCTT 704
|| ||||||||||||||| | |||||| | | || | | || | || ||| || ||
Sbjct 666 GACCTGACCTTGGTAAGG-ACCTTGAT-ATGTCAT-ATTGATGACGATGAATTGCCGGTT 722
Query 705 ACTCGTGTGAGATCTTGGAGTCTGAAGACGTTTTATGTTCCGCTCACATATGGAAGT-TT 763
||||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||
Sbjct 723 ACTCGTGTGAGATCTCGGAGTCTGAAGACGTTTTATGTTCCGCTCGCGTATGG-AGTAGG 781
Query 764 TTGTAGATCAAGAGTCCTAGACACAGTACTTGAGATTGATGCTCCAGGACTAGAGTCTAT 823
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 782 TTGTAGGTCAAGAGTCCCAGACAAAGTACTTGAGATTGATGCTCCAGGACTAGAGAATAT 841
Query 824 GACTCTCAAAGAAGACCATTTCGA-GAAAATCATAGTAAAGAACCTGACTTCTTTGTTCA 882
|||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||
Sbjct 842 GACTCTCAAAGAAGACCATTTCGATG-GAATCGTGGTAAAGAACCTGACTTCTTTGTTCA 900
Query 883 TGATTGACCTTGATATCAAGTTTGTTGTCAAGTA-TGACAGTAGTTTTGATCCAGAGGAC 941
||||||| ||| |||||||||||| |||| | || | ||| ||||||||||||||||||
Sbjct 901 TGATTGAACTTAATATCAAGTTTGCTGTCGATTACCG-CAGGAGTTTTGATCCAGAGGAC 959
Query 942 TTATCGAAGACAAATGAAATCCTTGATTTTCTCACTGGGATATCTCGTGCAAGACATATG 1001
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 TTATCGAAGAGAAATGAAATTGGTGATTTTCTCACTGGGATATCTCGTGCAAGACATATG 1019
Query 1002 ATCATCTCTAAGAAAACAGTGAAGGCCCTTGATAGTTACTCAAAAGTAGGATCGATTCCC 1061
||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1020 ATCATCTCTCAGAAAACAGTGAAGGCTCTTGAAAGTTACTCAAAAGTTGGATCGATTCCC 1079
Query 1062 AAATTCAATAACTTATCCCGTTTACAGGCTGTGTTCCCGAGCCCCTTGTTACCGTTTTTG 1121
|||||||||||||| || | |||| | ||||||||||||||||||||||||||||| |||
Sbjct 1080 AAATTCAATAACTTGTCACATTTAAAAGCTGTGTTCCCGAGCCCCTTGTTACCGTTCTTG 1139
Query 1122 CCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAAATCCTAATCCTGAAGATTGCTTTTGCA 1181
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1140 CCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAAAACCTAATCTTGAAGATTGCTTTTGCA 1199
Query 1182 AAGGATGACGAGACGGAGGAGCTGAATCTCGTAAATGTGCCTCGGTGTTTCATATCGACT 1241
|||||||| ||||||||||||||||||||| |||| |||||||||||| || ||||||||
Sbjct 1200 AAGGATGATGAGACGGAGGAGCTGAATCTCATAAACGTGCCTCGGTGTATCGTATCGACT 1259
Query 1242 CTCGAATGTGTTGAGATAAAAGGATTGTTTGAATGGGAGGAAGAGGAGATGAAAATAGCG 1301
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTCGAGTGTGTTGAGATAAAAGGATTGTTTGAATGGGAGGAAGAGGAGATGAAAATAGCG 1319
Query 1302 AAGTACTTTCTTGAAAACTCAGCAGTCCTCAAGAAACTCACTCTGTGTTTCATAGACTAC 1361
| |||||||||||||||| ||||||||||||||||||| ||| || |||| |||||||||
Sbjct 1320 AGGTACTTTCTTGAAAACGCAGCAGTCCTCAAGAAACTTACTATGAGTTTTATAGACTAC 1379
Query 1362 CCTCGATATGCATCAAATTCAGATGTCTACGAGGAGCTTAATAAACTCACAAAACGTTCT 1421
||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1380 CCTCGATATGCTTCAAATTCAGATGTCTACGAGGACCTTGATAAACTCACAAAACGTTCT 1439
Query 1422 CGAAGA-TGTCGAATTATCGTTGATGATGACTGATGAATACTGATCCGCAACCATGAAGA 1480
| || | ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
Sbjct 1440 C-AACAATGTCGAATTATCGTTGATGATGAGTGATGAAGATTGATCCGCAACCATGAATA 1498
Query 1481 AAGAAGCCCATGAGCAT 1497
| | |||||||||||
Sbjct 1499 A-G---CCCATGAGCAT 1511
> AT1G13780.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:4724608-4726499 FORWARD LENGTH=1629
Length=1629
Score = 1096 bits (593), Expect = 0.0
Identities = 1153/1411 (82%), Gaps = 88/1411 (6%)
Strand=Plus/Plus
Query 81 ATGCCTGGGTTTGATAGAATCAGCGAATTACCGGAATCTTTGATTACTCAAATACTCTTA 140
|||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||
Sbjct 89 ATGCCTGGGTTTGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCAAATACTGTTA 148
Query 141 TGCCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATCTACTAGATGGAAGAATCTA 200
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 149 CACCTTCCGACTAAAGCTTCTGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAATCTA 208
Query 201 TGGCTAAATGTTCCCGGACTTGACTTGAACTGCCGTGATTT-ACCTGATCAAGATGAAGA 259
||||| ||||||||||||||||| ||||||||||||||||| ||| || ||| ||
Sbjct 209 TGGCTTAATGTTCCCGGACTTGATTTGAACTGCCGTGATTTCCCCT-TTC-AGAACAA-C 265
Query 260 ATATGAAGAAGTGTTTATTAACTTCATCGACAGGTTTTTAGAGTTTAATC-CTGAGTCAC 318
| | ||| || |||| ||| | ||||| ||||| ||| | ||||||| | ||||||||
Sbjct 266 A-ACGAAAAACTGTTGATTGATTTCATTGACAGATTTCTCCAGTTTAA-CAATGAGTCAC 323
Query 319 GCCTGCAAAAATTCAAGGTAGATTACAGTAGGCG-TGAGATAC-TTGGGTTCAAGGATCG 376
| || ||||||||||||||||||||||||| | | | |||| | || |||| ||||||
Sbjct 324 GTCTTCAAAAATTCAAGGTAGATTACAGTA-GAGATAAGAT-CATTAAGTTCTCGGATCG 381
Query 377 GATCGGT-ACAGTGATTAACCGCGGAATTCGACTTCTT-GATGCTGTGAGTAGTA-CTGA 433
||| ||| || | ||||| |||||| |||||| || || |||| || ||| | || || |
Sbjct 382 GATTGGTGAC-GCGATTAGCCGCGGGATTCGAGTT-TTAGATGTTGAGAGCAATACCT-A 438
Query 434 ATATCGAGA-G--GATGACGGC-TTTATGTATCCTTATTTCGAGTTCATGCCTCTGAATC 489
|||||||| | ||||| || || | ||||||| | |||||||||||||||||||||
Sbjct 439 TTATCGAGATGCTGATGATTGCATTGA-CTATCCTTGTATCGAGTTCATGCCTCTGAATC 497
Query 490 TGTT-TACGAGCAAGACATTGGTTTCTTTAAAGCTCTCGTGTTCGGGTCTTAG-GGATCC 547
| || | || | ||||||||||||||||| ||||| |||| |||||||||| | ||||||
Sbjct 498 T-TTATTCGTGTAAGACATTGGTTTCTTTGAAGCTTTCGTATTCGGGTCTT-GAGGATCC 555
Query 548 -GGGTTTTGTTTCTATGCCTTGTCTTAAAGTCATGTTTCTTCAG-GAAATTCGAT--G-- 601
||| ||||| | | |||||||||| ||| ||||| ||||| | ||| |||||| |
Sbjct 556 AGGG-TTTGTCTATTTGCCTTGTCTCAAATTCATGCATCTTC-GAGAAGTTCGATGGGAT 613
Query 602 -GT-CTGGTACTATGCATCTTGAAAAGCTTGTCTCTGGATGTCCTGTTCTTGAAGAACTG 659
|| |||||||||| |||| || |||||||| || || |||||||||||||||||||||
Sbjct 614 AGTAGTGGTACTATGAATCTGGAGAAGCTTGTTTCAGGTTGTCCTGTTCTTGAAGAACTG 673
Query 660 ACCTTGGTAAGGTATCTTGATGAGGATGAATTGGTGGTTGCGCTTACTCGTGTGAGATCT 719
| | | |||||| |||| ||| || | ||| || | |||| ||||||||||||
Sbjct 674 A---T--T----TATCTTCATGATGAT-AAAT--TGG-TG-G-TTACGCGTGTGAGATCT 718
Query 720 TGGAGTC-TGAAGACGTTTTATGTTCCGCTCA--CATATGGAAGTTT-TTGTAGATCAAG 775
| || | |||||| ||||| | ||||| | | |||| || ||| || | | | | |
Sbjct 719 CGAAG-CTTGAAGAGGTTTTCTATTCCGTTTAGGCATA---AACTTTCTT-T-GTTTAGG 772
Query 776 AGTCCTAGACACAGTAC--TTGAGATTGATGCTCCAGGACTAGAGTCTATGACTCTCAAA 833
|| | ||||||| || |||||||||||||||| |||||||||| ||||| ||| |||
Sbjct 773 AG-AGT-GACACAG-ACATTTGAGATTGATGCTCCTGGACTAGAGTATATGAGTCTTAAA 829
Query 834 GAAGACCATTTCGAGAAAATCATAGTAAAGAACCTGACTTCTTTGTTCATGATTGACCTT 893
| |||||||||||| | |||| | ||||||||||| |||||||| |||||||||||||||
Sbjct 830 GCAGACCATTTCGATAGAATCGTGGTAAAGAACCTTACTTCTTTATTCATGATTGACCTT 889
Query 894 GATATCAAGTTTGTTGTCAAGTATGACAGTAGT-TTTGATCCAGAGGACTTATCGAAGAC 952
|||||||| || ||||| || || | | | | |||||||| ||||||||| | ||||
Sbjct 890 GATATCAAATTCATTGTCGGGTTTGGCTGGA-TGTTTGATCCGGAGGACTTACCAAAGAG 948
Query 953 AAATGAAATCCTTGATTTTCTCACTGGGATATCTCGTGCAAGACATATGATCATCTCTAA 1012
||||||||||| |||||||||||| ||||||||| ||| |||||||||| |||||||| |
Sbjct 949 AAATGAAATCCGTGATTTTCTCACCGGGATATCTAGTGTAAGACATATGGTCATCTCTCA 1008
Query 1013 GAAAACAGTGAAGGCCCTTGATAGTTACTCAAAAGTAGGATC-GATTCCCAAATTCAATA 1071
|| |||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 1009 TAATACAGTGAAGGCCCTTGATCTTTACTCAAAAGTAGGA-CTGATTCCCAAATTCAATA 1067
Query 1072 ACTTATCCCGTTTACAGGCTGTGTTCCCGAGCCCCTTGTTACCGTTTTTGCCAGCCTTTC 1131
||||||||||| || |||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 1068 ACTTATCCCGTGTAGAGGCTGCGTTCCCGAGCTCCTTGTTACAGTTTTTGCCAGCCTTTC 1127
Query 1132 TTGAGAGTTTCCCGAATCTGAAA-ATCCTAATCCTG-AAGATTGCTTTTGCAAAGGATGA 1189
||||||| ||||||||||||||| | | ||||| || || | || | | || ||| |
Sbjct 1128 TTGAGAGCTTCCCGAATCTGAAACA-CTTAATCTTGGAA-ACTGAATGTCCAGTGGA-G- 1183
Query 1190 CGAGACGGAGGAGCT-GAATCTCGTAAATGTGCCTCGGTGTTTCATATCGACTCTCGAAT 1248
| || |||| || | ||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 1184 -GTGATGGAGAAGTTTGAA-CTCGTAAATGTGCCTCGGTGTTTCGTATCGACTCTTGAAC 1241
Query 1249 GTGTTGAGATAAAAGGATTGTTTGAATGGGAGGAAGAGGAGATGAAAATAGCGAAGT-AC 1307
|||||||||||||||||||||||| |||| |||| |||| ||||||||||||| || ||
Sbjct 1242 ATGTTGAGATAAAAGGATTGTTTGACTGGGGGGAACAGGATATGAAAATAGCGA-GTTAC 1300
Query 1308 TTTCTTGAAAACTCAGCAGTCCTCAAGAAACTCACTCTGTGTTTCATAGACTACCCTCGA 1367
||||| |||||||||||||||||||||||||| | |||| ||||||| | | |||| |
Sbjct 1301 TTTCTCGAAAACTCAGCAGTCCTCAAGAAACTGATTCTGAGTTTCATGGGTTGTCCTCAA 1360
Query 1368 TATGCAT-CA-AATTCAGATGTCTACGAGGAGCTTAATAAACTCACAAAACGTTCTC-GA 1424
|| || | ||| ||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 1361 CATT-ATTCGGAAT-CAGATATCTACGAGGAACTTAATAAACTCACAAAACGTTCTCCGA 1418
Query 1425 AGATGTCGAATTATCGTT-GATGATGACTGA 1454
|||||| ||||||| || |||| ||| |||
Sbjct 1419 -GATGTCAAATTATCATTAGATGCTGAATGA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5