BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489556
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27730.1 | Symbols: | Protein of unknown function (DUF1624)... 2257 0.0
> AT5G27730.1 | Symbols: | Protein of unknown function (DUF1624)
| chr5:9820249-9823086 FORWARD LENGTH=1699
Length=1699
Score = 2257 bits (1222), Expect = 0.0
Identities = 1458/1569 (93%), Gaps = 27/1569 (2%)
Strand=Plus/Plus
Query 22 GAGGAGTCTCGCCGGAAACAACAGACCAAGACTTGCTTCTCTCGACATCTTCCGCGGCCT 81
|||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 143 GAGGAGCCTCGCCGG--A-AACAGACCAAGACTTGCTTCTCTCGACATATTCCGCGGCCT 199
Query 82 CACTGTCGCCTTGATGATTCTCGTGGATGACGCCGGAGGAGACTGGCCAATGATTGCTCA 141
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 200 CACTGTCGCCTTGATGATTCTCGTTGATGACGCTGGAGGAGACTGGCCAATGATTGCTCA 259
Query 142 CGCTCCATGGAACGGCTGCAATTTGGCTGATTTCGTCATGCCTTTCTTTTTGTTCATCGT 201
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 260 TGCTCCGTGGAACGGTTGCAATTTGGCTGATTTCGTTATGCCTTTCTTTTTGTTCATCGT 319
Query 202 TGGCGTCTCCATCGCTCTTTCCTTGAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAA 261
||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 320 TGGTGTCTCCATTGCTCTCTCCTTAAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAA 379
Query 262 GG-TGTGTTTTAGGACCTGCAAGCTTCTTTTCTGGGGTCTTCTACTGCAGGGTGGATTCT 320
|| || ||||||| ||||||||||| || ||||||||||||||||| || |||||||| |
Sbjct 380 GGTTG-GTTTTAGAACCTGCAAGCTCCTCTTCTGGGGTCTTCTACTTCAAGGTGGATTTT 438
Query 321 CTCATGCTCCTGACGAATTAAGC-TATGGTGTTGATGTGACTATGATGAGGTTTTGTGGG 379
||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||
Sbjct 439 CTCATGCTCCTGACGAATTAA-CATACGGAGTTGATGTGACTATGATGAGGTTTTGTGGG 497
Query 380 ATTCTTCAGAGGATTGCTTTATCCTACTTGGTAGTAGCATTGATCGAAATCTTCACAAAG 439
||||||||||| || ||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 498 ATTCTTCAGAGAATAGCTTTATCCTATTTGGTAGTAGCATTGGTCGAGATCTTCACAAAG 557
Query 440 GACTTACATGAGGAGAATCTGTCAACTGGAAGGTTGTCAATATTCAAGTCATATTTTTGC 499
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 558 GACTCACATGAGGAGAATCTGTCAACTGGGAGGTTTTCAATATTCAAGTCATATTATTGG 617
Query 500 CATTGGATTGTGGGTGTATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACTTAC 559
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 618 CATTGGATTGTGGCCGCATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACGTAC 677
Query 560 GTTCCTGACTGGGAATTTGTTGTCAATGATAAAGATAGCATTCTGTACGGGAAAATCCAA 619
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 678 GTTCCTGACTGGGAATTTGTTGTCTATGATAAAGATAGCGTTCTGTACGGGAAAATCCTA 737
Query 620 TCTGTATCATGTGGAGTGAGAGGAAAGCTAAACCCTCCTTGCAATGCTGTTGGATATGTT 679
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 738 TCGGTATCATGTGGAGTGAGAGGAAAGCTGAACCCTCCTTGCAATGCTGTTGGATATGTT 797
Query 680 GACAGAAAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGAGCCAAG 739
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 798 GACAGACAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGATCCAAG 857
Query 740 GCTTGCACCGATGATTCCCCCTATGAGGGAGCTTTACGCCAAGATGCACCGTCATGGTGC 799
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 858 GCTTGCACCGATGATTCCCCCTATGAGGGAGCTATACGCCAAGATGCACCTTCATGGTGC 917
Query 800 CGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTCTCTACAATC 859
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 918 CGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTTTCTACAATC 977
Query 860 ATCGGAGTCCATTTTGGACATATTATCATAGACTTGAAGGGGCATTCAGCTCGGCTGAAA 919
|||||||||||||||||||||||||| || |||||||||| |||||||| ||||| |||
Sbjct 978 ATCGGAGTCCATTTTGGACATATTATTTTACACTTGAAGGGACATTCAGCGCGGCTAAAA 1037
Query 920 CATTGGATCTCCACCGGTCTTGTTCTCCTCACTCTGGGACTTACTCTGCATTTCACACAC 979
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 1038 CATTGGATCTCCACCGGTCTTGTTCTCCTCGCTCTCGGACTTACTCTGCATTTCACCCAC 1097
Query 980 TTGATGCCTTTGAACAAACAACTCTACAGTTTCAGCTACATATGTGTGACCTCCGGTGCA 1039
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1098 TTGATGCCTCTGAACAAACAACTCTACAGTTTCAGCTACATATGCGTGACCTCCGGTGCA 1157
Query 1040 GCTGCACTCGTCTTCTCTTCATTGTATTCTCTGGTTGATGTATTGGAGTGGAAACACATG 1099
|| || |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1158 GCAGCGCTCGTCTTCTCTTCGTTGTATTCTCTGGTCGATATATTGGAGTGGAAACACATG 1217
Query 1100 TTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGCTGGTCTACGTGATGGGAGCTGAA 1159
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1218 TTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGTTGGTGTACGTGATGGGAGCTGAA 1277
Query 1160 GGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCACACAATACACTGATA 1219
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1278 GGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCGCACAATACACTGATA 1337
Query 1220 ACTTGGATCCGAGAGCATGTTTTTATCAGAGTTTGGCATTCAAAAAGAGTTGGTGTGCTT 1279
| |||||| || ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1338 AATTGGATTCGGGAGCATGTTTTTATCCGAGTTTGGCATTCAAGAAGAGTTGGTGTGCTA 1397
Query 1280 ATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCATAGA 1339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1398 ATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCACAGA 1457
Query 1340 TTCAAGATCTATTGGAAACTCTAAGTAGACCGTGAAAATACCTA-CTCTATGTTGAAGTT 1398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1458 TTCAAGATCTATTGGAAACTCTAAGTAGACCGTGAAAATACCTAACTCTATGTTGAAGTT 1517
Query 1399 GT-ACTAGTTT-GTCGCA-ACTACAATCAAATTCATGATAAGTTATGTAATCAAATTCAT 1455
|| | |||||| | | | || ||||||||||||| ||||| ||||| ||||||||||
Sbjct 1518 GTTA-TAGTTTAGGAT-ATA-TAAAATCAAATTCATGGTAAGTAATGTAGTCAAATTCAT 1574
Query 1456 GATAAGTTATGTATAATGTTTA-TAAACCTTGAGTCAGAAT--CCTTTGTTGATG---AT 1509
||||||||||||||| | ||| ||||||||| |||||||| |||||||||||| ||
Sbjct 1575 GATAAGTTATGTATATT-TTTCGTAAACCTTG-GTCAGAATATCCTTTGTTGATGTTGAT 1632
Query 1510 -ATA--GGCTTTGTATGTGCATTTCAGGCCGGTTTCACCGATCTACCCGGATTGGAACTT 1566
||| ||| | |||| ||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1633 GATATAGGCCT-GTATATGCATTTCAGGCCAATTTCACCGATCTACC-GTATTGGAACTT 1690
Query 1567 AAATATCCG 1575
|||||||||
Sbjct 1691 AAATATCCG 1699
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 AATGGCGGAAATCAAAGTGGAGAGGAGTC 29
|||||||||||||||||||||||||||||
Sbjct 62 AATGGCGGAAATCAAAGTGGAGAGGAGTC 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5