BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489556 Length=1575 Score E Sequences producing significant alignments: (Bits) Value AT5G27730.1 | Symbols: | Protein of unknown function (DUF1624)... 2257 0.0 > AT5G27730.1 | Symbols: | Protein of unknown function (DUF1624) | chr5:9820249-9823086 FORWARD LENGTH=1699 Length=1699 Score = 2257 bits (1222), Expect = 0.0 Identities = 1458/1569 (93%), Gaps = 27/1569 (2%) Strand=Plus/Plus Query 22 GAGGAGTCTCGCCGGAAACAACAGACCAAGACTTGCTTCTCTCGACATCTTCCGCGGCCT 81 |||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||| Sbjct 143 GAGGAGCCTCGCCGG--A-AACAGACCAAGACTTGCTTCTCTCGACATATTCCGCGGCCT 199 Query 82 CACTGTCGCCTTGATGATTCTCGTGGATGACGCCGGAGGAGACTGGCCAATGATTGCTCA 141 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 200 CACTGTCGCCTTGATGATTCTCGTTGATGACGCTGGAGGAGACTGGCCAATGATTGCTCA 259 Query 142 CGCTCCATGGAACGGCTGCAATTTGGCTGATTTCGTCATGCCTTTCTTTTTGTTCATCGT 201 ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 260 TGCTCCGTGGAACGGTTGCAATTTGGCTGATTTCGTTATGCCTTTCTTTTTGTTCATCGT 319 Query 202 TGGCGTCTCCATCGCTCTTTCCTTGAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAA 261 ||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 320 TGGTGTCTCCATTGCTCTCTCCTTAAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAA 379 Query 262 GG-TGTGTTTTAGGACCTGCAAGCTTCTTTTCTGGGGTCTTCTACTGCAGGGTGGATTCT 320 || || ||||||| ||||||||||| || ||||||||||||||||| || |||||||| | Sbjct 380 GGTTG-GTTTTAGAACCTGCAAGCTCCTCTTCTGGGGTCTTCTACTTCAAGGTGGATTTT 438 Query 321 CTCATGCTCCTGACGAATTAAGC-TATGGTGTTGATGTGACTATGATGAGGTTTTGTGGG 379 ||||||||||||||||||||| | || || |||||||||||||||||||||||||||||| Sbjct 439 CTCATGCTCCTGACGAATTAA-CATACGGAGTTGATGTGACTATGATGAGGTTTTGTGGG 497 Query 380 ATTCTTCAGAGGATTGCTTTATCCTACTTGGTAGTAGCATTGATCGAAATCTTCACAAAG 439 ||||||||||| || ||||||||||| ||||||||||||||| |||| |||||||||||| Sbjct 498 ATTCTTCAGAGAATAGCTTTATCCTATTTGGTAGTAGCATTGGTCGAGATCTTCACAAAG 557 Query 440 GACTTACATGAGGAGAATCTGTCAACTGGAAGGTTGTCAATATTCAAGTCATATTTTTGC 499 |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| Sbjct 558 GACTCACATGAGGAGAATCTGTCAACTGGGAGGTTTTCAATATTCAAGTCATATTATTGG 617 Query 500 CATTGGATTGTGGGTGTATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACTTAC 559 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 618 CATTGGATTGTGGCCGCATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACGTAC 677 Query 560 GTTCCTGACTGGGAATTTGTTGTCAATGATAAAGATAGCATTCTGTACGGGAAAATCCAA 619 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | Sbjct 678 GTTCCTGACTGGGAATTTGTTGTCTATGATAAAGATAGCGTTCTGTACGGGAAAATCCTA 737 Query 620 TCTGTATCATGTGGAGTGAGAGGAAAGCTAAACCCTCCTTGCAATGCTGTTGGATATGTT 679 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 738 TCGGTATCATGTGGAGTGAGAGGAAAGCTGAACCCTCCTTGCAATGCTGTTGGATATGTT 797 Query 680 GACAGAAAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGAGCCAAG 739 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 798 GACAGACAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGATCCAAG 857 Query 740 GCTTGCACCGATGATTCCCCCTATGAGGGAGCTTTACGCCAAGATGCACCGTCATGGTGC 799 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 858 GCTTGCACCGATGATTCCCCCTATGAGGGAGCTATACGCCAAGATGCACCTTCATGGTGC 917 Query 800 CGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTCTCTACAATC 859 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 918 CGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTTTCTACAATC 977 Query 860 ATCGGAGTCCATTTTGGACATATTATCATAGACTTGAAGGGGCATTCAGCTCGGCTGAAA 919 |||||||||||||||||||||||||| || |||||||||| |||||||| ||||| ||| Sbjct 978 ATCGGAGTCCATTTTGGACATATTATTTTACACTTGAAGGGACATTCAGCGCGGCTAAAA 1037 Query 920 CATTGGATCTCCACCGGTCTTGTTCTCCTCACTCTGGGACTTACTCTGCATTTCACACAC 979 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| Sbjct 1038 CATTGGATCTCCACCGGTCTTGTTCTCCTCGCTCTCGGACTTACTCTGCATTTCACCCAC 1097 Query 980 TTGATGCCTTTGAACAAACAACTCTACAGTTTCAGCTACATATGTGTGACCTCCGGTGCA 1039 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1098 TTGATGCCTCTGAACAAACAACTCTACAGTTTCAGCTACATATGCGTGACCTCCGGTGCA 1157 Query 1040 GCTGCACTCGTCTTCTCTTCATTGTATTCTCTGGTTGATGTATTGGAGTGGAAACACATG 1099 || || |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| Sbjct 1158 GCAGCGCTCGTCTTCTCTTCGTTGTATTCTCTGGTCGATATATTGGAGTGGAAACACATG 1217 Query 1100 TTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGCTGGTCTACGTGATGGGAGCTGAA 1159 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1218 TTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGTTGGTGTACGTGATGGGAGCTGAA 1277 Query 1160 GGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCACACAATACACTGATA 1219 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1278 GGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCGCACAATACACTGATA 1337 Query 1220 ACTTGGATCCGAGAGCATGTTTTTATCAGAGTTTGGCATTCAAAAAGAGTTGGTGTGCTT 1279 | |||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1338 AATTGGATTCGGGAGCATGTTTTTATCCGAGTTTGGCATTCAAGAAGAGTTGGTGTGCTA 1397 Query 1280 ATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCATAGA 1339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1398 ATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCACAGA 1457 Query 1340 TTCAAGATCTATTGGAAACTCTAAGTAGACCGTGAAAATACCTA-CTCTATGTTGAAGTT 1398 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1458 TTCAAGATCTATTGGAAACTCTAAGTAGACCGTGAAAATACCTAACTCTATGTTGAAGTT 1517 Query 1399 GT-ACTAGTTT-GTCGCA-ACTACAATCAAATTCATGATAAGTTATGTAATCAAATTCAT 1455 || | |||||| | | | || ||||||||||||| ||||| ||||| |||||||||| Sbjct 1518 GTTA-TAGTTTAGGAT-ATA-TAAAATCAAATTCATGGTAAGTAATGTAGTCAAATTCAT 1574 Query 1456 GATAAGTTATGTATAATGTTTA-TAAACCTTGAGTCAGAAT--CCTTTGTTGATG---AT 1509 ||||||||||||||| | ||| ||||||||| |||||||| |||||||||||| || Sbjct 1575 GATAAGTTATGTATATT-TTTCGTAAACCTTG-GTCAGAATATCCTTTGTTGATGTTGAT 1632 Query 1510 -ATA--GGCTTTGTATGTGCATTTCAGGCCGGTTTCACCGATCTACCCGGATTGGAACTT 1566 ||| ||| | |||| ||||||||||||| ||||||||||||||| | |||||||||| Sbjct 1633 GATATAGGCCT-GTATATGCATTTCAGGCCAATTTCACCGATCTACC-GTATTGGAACTT 1690 Query 1567 AAATATCCG 1575 ||||||||| Sbjct 1691 AAATATCCG 1699 Score = 54.7 bits (29), Expect = 3e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1 AATGGCGGAAATCAAAGTGGAGAGGAGTC 29 ||||||||||||||||||||||||||||| Sbjct 62 AATGGCGGAAATCAAAGTGGAGAGGAGTC 90 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77760644205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5