BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489558
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27710.1 | Symbols: | unknown protein; Has 49 Blast hits to... 1823 0.0
> AT5G27710.1 | Symbols: | unknown protein; Has 49 Blast hits
to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:9812988-9815420 FORWARD
LENGTH=1491
Length=1491
Score = 1823 bits (987), Expect = 0.0
Identities = 1303/1447 (90%), Gaps = 56/1447 (4%)
Strand=Plus/Plus
Query 1 CTCTACTGTCTCTCTTCACCATTCTCCAATCTCTCCCACAAGAACAAAGATAATGTGGAT 60
|||||| |||||||||| |||||||||||| | | | |||||||||||||||||
Sbjct 1 CTCTACAGTCTCTCTTCTCCATTCTCCAAT-T-T----C---TACAAAGATAATGTGGAT 51
Query 61 TCACCAAAACTTCAGAGGAAGGACACGACAATGGTGAATTCATACGTTCCTCTTCGTTTC 120
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 52 TCACCAAAAATTCAGAGGAAGGACACGACAATGGTGAATTCGTACGTTCCTCTTCGTTTC 111
Query 121 ACCATTTTCATCTCCTTCTCCATCGCAGCAGCTTC-T--TTCAAACT-CGC-CAG-TTCC 174
||||||||||||||||||||||||||||||||||| | |||||||| | | | | |||
Sbjct 112 ACCATTTTCATCTCCTTCTCCATCGCAGCAGCTTCATCCTTCAAACTCCACTCCGCTTCT 171
Query 175 CAATCTCCGTCATCGTTTCCAAAAGCCACCGCCGGCGATCTTCTCTCTGTTCTCGGACCA 234
|| |||||||| || ||||| |||||||||| || |||||| ||||| |||||||||||
Sbjct 172 CATTCTCCGTCGTCATTTCCGAAAGCCACCGGCGACGATCTACTCTCCGTTCTCGGACC- 230
Query 235 T-CCTCCACCGCGTCTTGCCTCAACCCAATCGTCTCTCGAGAAATCAAATCTTGTCTCAA 293
| ||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 231 TCCCTCCGCCGCGTCGTGCCTCAACCCAATCGTCTCTCGAGAGATCAAATCGTGTCTTAA 290
Query 294 ATTCCTCGTCCCTTTCAAATCGGATAAATCTAAACCCGAATTGGGACGATGTTCGCTTCG 353
|||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| |||
Sbjct 291 ATTCCTCGTCCCATTCAAATCGGATAAACCTAAACCCGAATTTGGACGATGCTCGCCTCG 350
Query 354 CACTGGACTCTGTTCAGGTAAAATTGACGCCGTTGAGAAG-CTGAGTAAGTTTGAAGAGG 412
|||||||||||||| || |||||||||||||||||| || | ||| |||||||||||||
Sbjct 351 TACTGGACTCTGTTCCGGAAAAATTGACGCCGTTGAG-AGACGGAGCAAGTTTGAAGAGG 409
Query 413 AGAATTCTCTAATCTGGTGGCCACCGGAGTCGGTTCTAGAGCTAGCTCGTCTCGCTGTTG 472
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 410 AGAATTCTCTAATCTGGTGGCCACCGGAATCGGTTCTAGAGCTTGCTCGTCTCGCTGTTG 469
Query 473 ACTCCGGTGGTGATCCCGGTTCAATTCAGCGAACTCTCAATCCCAAAATGATTCCGGTTC 532
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 470 ACTCCGGTGGTGATCCCGGTTCAATTCAGCGAACTCTCAATCCGAAAATGATCCCGGTTC 529
Query 533 CTGATGTTGAACGATCAAGAAAAAATAAATGTCAACTTACAAGAAGTCCTTATGGTCGTC 592
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 530 CTGATGTTGAACGATCAAGAAAAGATAAATGTCAACTTACTAGAACTCCTTATGGTCGTC 589
Query 593 ATTTTATAGCAGAGGAAGTGAACTCATATTTCGAGTTCTTGTTTCATCTAATTGAATCTA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATTTTATAGCAGAGGAAGTGAACTCATATTTCGAGTTCTTGTTTCATCTAATTGAATCTA 649
Query 653 GGGGACCAAGTGTTGGATTGAATGTTTCGTTGACTCGATATGATTTGTTTCATGGTCATT 712
||||||| |||||||||||||||||||| |||| | ||||||||||||| ||||| ||||
Sbjct 650 GGGGACCTAGTGTTGGATTGAATGTTTCATTGAGTAGATATGATTTGTTCCATGGCCATT 709
Query 713 TATTTCTTGCCTCAGAATCTGGACGCCTTGGAATATTGTTTCATGCTAAAGAGTACCCAG 772
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 710 TATTCCTTGCCTCAGAATCTGGACGCCTTGGAATATTGTTTCATGCTAAAGAGTATCCAG 769
Query 773 CCTATGACAAGAAAGTGTTTCCTTACAACATGGGATATTGCCAGAGAGGATCTGACATGA 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 770 CCTATGACAAGAAAGTGTTTCCTTACAACATGGGATATTGCCAGAGAGGATCTGACGTGA 829
Query 833 GATACGATGATTCAATGAACTTGAGGAATATCCTTTGGCTTGCACCATTACCCAGCAACT 892
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 830 AATACAATGATTCAATGAACTTGAGGAATATCCTTTGGCTTGCACCATTACCTAGCAACT 889
Query 893 CTTCTCCAGATTGGCTTGCTCCAGGTGTACTTGTGGTGCTTGATGCGCATCCGGATGGAA 952
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 890 CTTCTCCAGATTGGGTTGCTCCAGGTGTACTTGTGGTTCTTGATGCGCATCCGGATGGAA 949
Query 953 TCATATACCGAGATCTGATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGATG 1012
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TCATATACCGAGATCTCATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGATG 1009
Query 1013 ATTTGGGAACAACTGCGGTTGATGTCAATTACTTGAATGTCGGAGCTCACGAACCTGACT 1072
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATTTGGGAACAACCGCAGTTGATGTCAATTACTTGAATGTCGGAGCTCACGAACCTGACT 1069
Query 1073 ATCAGCTTTTCGTGTGCTGAAAC---C-AGTTACAGATTTACAATT-CAACAGTTGTCTG 1127
||||||||||| ||||||||||| | ||||||||||| |||||| || ||||||| ||
Sbjct 1070 ATCAGCTTTTCATGTGCTGAAACAAACCAGTTACAGATTCACAATTACA-CAGTTGTGTG 1128
Query 1128 -A-TTGAAACTTTGATTAAGATCTAGTTATTGGAGATGGTCAGAGGTTCAAGAACGTTCG 1185
| ||||||||||||||||||| |||||| ||||| ||||| ||||||||| ||||||||
Sbjct 1129 TAATTGAAACTTTGATTAAGATTTAGTTACTGGAGCTGGTC-GAGGTTCAATAACGTTCG 1187
Query 1186 AGTTAGTTGATAATTTAGATAGGTA--AA-TA--G-CT-TTA-ACAAT--CTCT--CAGG 1233
|||| |||||||||||||| |||| || || | | ||| | ||| || | ||
Sbjct 1188 AGTTGGTTGATAATTTAGAGAGGTCTGAAGTATTGTCGGTTACAAAATAGCTTTAACAA- 1246
Query 1234 T-A-ATTG-T-A---TA-AAGTTTACTGG-AAACGTTTAGGATTAGATTTGACATATCAC 1284
| | |||| | | | ||| ||| | | ||| ||||||||||||||||||||||||||
Sbjct 1247 TCACATTGCTGAGGCTTTAAGCTTAATTGTAAAAGTTTAGGATTAGATTTGACATATCAC 1306
Query 1285 TTGCCTTTG----ATTCACACAGTTTGTGGTGGTGATGTAAATTAATTAATTTCCAGAGC 1340
||| ||||| |||||||||||| | | |||||||||||||||||||||| |||||
Sbjct 1307 TTGGCTTTGTTTGATTCACACAGTTCGCCTTAGTGATGTAAATTAATTAATTTCGAGAGC 1366
Query 1341 TTCAATAACATATTAAGGATTAGTTATTTTTCTCCAGATAACCATCT-CCAACGGCTGCT 1399
||||||||||||||| ||||||||||||| | |||| ||||||| | ||||||||| |
Sbjct 1367 ATCAATAACATATTAATGATTAGTTATTTTCCACCAGGTAACCAT-TGCCAACGGCTACA 1425
Query 1400 AATACAC 1406
|||||||
Sbjct 1426 AATACAC 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5