BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489558 Length=1439 Score E Sequences producing significant alignments: (Bits) Value AT5G27710.1 | Symbols: | unknown protein; Has 49 Blast hits to... 1823 0.0 > AT5G27710.1 | Symbols: | unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:9812988-9815420 FORWARD LENGTH=1491 Length=1491 Score = 1823 bits (987), Expect = 0.0 Identities = 1303/1447 (90%), Gaps = 56/1447 (4%) Strand=Plus/Plus Query 1 CTCTACTGTCTCTCTTCACCATTCTCCAATCTCTCCCACAAGAACAAAGATAATGTGGAT 60 |||||| |||||||||| |||||||||||| | | | ||||||||||||||||| Sbjct 1 CTCTACAGTCTCTCTTCTCCATTCTCCAAT-T-T----C---TACAAAGATAATGTGGAT 51 Query 61 TCACCAAAACTTCAGAGGAAGGACACGACAATGGTGAATTCATACGTTCCTCTTCGTTTC 120 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 52 TCACCAAAAATTCAGAGGAAGGACACGACAATGGTGAATTCGTACGTTCCTCTTCGTTTC 111 Query 121 ACCATTTTCATCTCCTTCTCCATCGCAGCAGCTTC-T--TTCAAACT-CGC-CAG-TTCC 174 ||||||||||||||||||||||||||||||||||| | |||||||| | | | | ||| Sbjct 112 ACCATTTTCATCTCCTTCTCCATCGCAGCAGCTTCATCCTTCAAACTCCACTCCGCTTCT 171 Query 175 CAATCTCCGTCATCGTTTCCAAAAGCCACCGCCGGCGATCTTCTCTCTGTTCTCGGACCA 234 || |||||||| || ||||| |||||||||| || |||||| ||||| ||||||||||| Sbjct 172 CATTCTCCGTCGTCATTTCCGAAAGCCACCGGCGACGATCTACTCTCCGTTCTCGGACC- 230 Query 235 T-CCTCCACCGCGTCTTGCCTCAACCCAATCGTCTCTCGAGAAATCAAATCTTGTCTCAA 293 | ||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||| || Sbjct 231 TCCCTCCGCCGCGTCGTGCCTCAACCCAATCGTCTCTCGAGAGATCAAATCGTGTCTTAA 290 Query 294 ATTCCTCGTCCCTTTCAAATCGGATAAATCTAAACCCGAATTGGGACGATGTTCGCTTCG 353 |||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| ||| Sbjct 291 ATTCCTCGTCCCATTCAAATCGGATAAACCTAAACCCGAATTTGGACGATGCTCGCCTCG 350 Query 354 CACTGGACTCTGTTCAGGTAAAATTGACGCCGTTGAGAAG-CTGAGTAAGTTTGAAGAGG 412 |||||||||||||| || |||||||||||||||||| || | ||| ||||||||||||| Sbjct 351 TACTGGACTCTGTTCCGGAAAAATTGACGCCGTTGAG-AGACGGAGCAAGTTTGAAGAGG 409 Query 413 AGAATTCTCTAATCTGGTGGCCACCGGAGTCGGTTCTAGAGCTAGCTCGTCTCGCTGTTG 472 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 410 AGAATTCTCTAATCTGGTGGCCACCGGAATCGGTTCTAGAGCTTGCTCGTCTCGCTGTTG 469 Query 473 ACTCCGGTGGTGATCCCGGTTCAATTCAGCGAACTCTCAATCCCAAAATGATTCCGGTTC 532 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 470 ACTCCGGTGGTGATCCCGGTTCAATTCAGCGAACTCTCAATCCGAAAATGATCCCGGTTC 529 Query 533 CTGATGTTGAACGATCAAGAAAAAATAAATGTCAACTTACAAGAAGTCCTTATGGTCGTC 592 ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| Sbjct 530 CTGATGTTGAACGATCAAGAAAAGATAAATGTCAACTTACTAGAACTCCTTATGGTCGTC 589 Query 593 ATTTTATAGCAGAGGAAGTGAACTCATATTTCGAGTTCTTGTTTCATCTAATTGAATCTA 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 ATTTTATAGCAGAGGAAGTGAACTCATATTTCGAGTTCTTGTTTCATCTAATTGAATCTA 649 Query 653 GGGGACCAAGTGTTGGATTGAATGTTTCGTTGACTCGATATGATTTGTTTCATGGTCATT 712 ||||||| |||||||||||||||||||| |||| | ||||||||||||| ||||| |||| Sbjct 650 GGGGACCTAGTGTTGGATTGAATGTTTCATTGAGTAGATATGATTTGTTCCATGGCCATT 709 Query 713 TATTTCTTGCCTCAGAATCTGGACGCCTTGGAATATTGTTTCATGCTAAAGAGTACCCAG 772 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 710 TATTCCTTGCCTCAGAATCTGGACGCCTTGGAATATTGTTTCATGCTAAAGAGTATCCAG 769 Query 773 CCTATGACAAGAAAGTGTTTCCTTACAACATGGGATATTGCCAGAGAGGATCTGACATGA 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 770 CCTATGACAAGAAAGTGTTTCCTTACAACATGGGATATTGCCAGAGAGGATCTGACGTGA 829 Query 833 GATACGATGATTCAATGAACTTGAGGAATATCCTTTGGCTTGCACCATTACCCAGCAACT 892 |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 830 AATACAATGATTCAATGAACTTGAGGAATATCCTTTGGCTTGCACCATTACCTAGCAACT 889 Query 893 CTTCTCCAGATTGGCTTGCTCCAGGTGTACTTGTGGTGCTTGATGCGCATCCGGATGGAA 952 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 890 CTTCTCCAGATTGGGTTGCTCCAGGTGTACTTGTGGTTCTTGATGCGCATCCGGATGGAA 949 Query 953 TCATATACCGAGATCTGATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGATG 1012 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 TCATATACCGAGATCTCATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGATG 1009 Query 1013 ATTTGGGAACAACTGCGGTTGATGTCAATTACTTGAATGTCGGAGCTCACGAACCTGACT 1072 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 ATTTGGGAACAACCGCAGTTGATGTCAATTACTTGAATGTCGGAGCTCACGAACCTGACT 1069 Query 1073 ATCAGCTTTTCGTGTGCTGAAAC---C-AGTTACAGATTTACAATT-CAACAGTTGTCTG 1127 ||||||||||| ||||||||||| | ||||||||||| |||||| || ||||||| || Sbjct 1070 ATCAGCTTTTCATGTGCTGAAACAAACCAGTTACAGATTCACAATTACA-CAGTTGTGTG 1128 Query 1128 -A-TTGAAACTTTGATTAAGATCTAGTTATTGGAGATGGTCAGAGGTTCAAGAACGTTCG 1185 | ||||||||||||||||||| |||||| ||||| ||||| ||||||||| |||||||| Sbjct 1129 TAATTGAAACTTTGATTAAGATTTAGTTACTGGAGCTGGTC-GAGGTTCAATAACGTTCG 1187 Query 1186 AGTTAGTTGATAATTTAGATAGGTA--AA-TA--G-CT-TTA-ACAAT--CTCT--CAGG 1233 |||| |||||||||||||| |||| || || | | ||| | ||| || | || Sbjct 1188 AGTTGGTTGATAATTTAGAGAGGTCTGAAGTATTGTCGGTTACAAAATAGCTTTAACAA- 1246 Query 1234 T-A-ATTG-T-A---TA-AAGTTTACTGG-AAACGTTTAGGATTAGATTTGACATATCAC 1284 | | |||| | | | ||| ||| | | ||| |||||||||||||||||||||||||| Sbjct 1247 TCACATTGCTGAGGCTTTAAGCTTAATTGTAAAAGTTTAGGATTAGATTTGACATATCAC 1306 Query 1285 TTGCCTTTG----ATTCACACAGTTTGTGGTGGTGATGTAAATTAATTAATTTCCAGAGC 1340 ||| ||||| |||||||||||| | | |||||||||||||||||||||| ||||| Sbjct 1307 TTGGCTTTGTTTGATTCACACAGTTCGCCTTAGTGATGTAAATTAATTAATTTCGAGAGC 1366 Query 1341 TTCAATAACATATTAAGGATTAGTTATTTTTCTCCAGATAACCATCT-CCAACGGCTGCT 1399 ||||||||||||||| ||||||||||||| | |||| ||||||| | ||||||||| | Sbjct 1367 ATCAATAACATATTAATGATTAGTTATTTTCCACCAGGTAACCAT-TGCCAACGGCTACA 1425 Query 1400 AATACAC 1406 ||||||| Sbjct 1426 AATACAC 1432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70933370085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5