BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489559
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27690.1 | Symbols: | Heavy metal transport/detoxification ... 1535 0.0
> AT5G27690.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:9803764-9805160 FORWARD LENGTH=1215
Length=1215
Score = 1535 bits (831), Expect = 0.0
Identities = 1013/1096 (92%), Gaps = 31/1096 (3%)
Strand=Plus/Plus
Query 1 CCCTCTGCTTCGTCTTCCTCTTTCTCTCCAATATGGATTTAGGAACAGAGATCAAATCAG 60
|||||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 CCCTCTTCTTCATCTTCCTCTTTCTCTCCATTATGGATTTAGGAACAGAGATAAAATCAG 60
Query 61 ACACCAGACAAGAAGAACAGAGACATGTTTTTGAAGATTACCATGAACCTCTTAGATACA 120
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 61 ACACAAGACAAGAAGAACAGAGACATGTTTTCGAAGATTACCCTGAACCTCTTAGATACA 120
Query 121 CCACATGGGTTTTAAGAGTTTCTATCCATTGCGAAGGATGCAAGAGAAAAATCAAGAAAA 180
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCACATGGGTTTTGCGAGTTTCTATCCATTGTGAAGGATGCAAGAGAAAAATCAAGAAAA 180
Query 181 TATTGAGCAAAATCGATGGTGTATATACAACAAATATCGACGTAAAGCAACAAAAAGTAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TATTGAGCAAAATCGATGGTGTATATACAACAAATATCGACGTGAAGCAACAAAAAGTAA 240
Query 241 CGGTGATTGGAAACGTAGAGCCGGAGATTTTAATCAAGAAGATCATGAAAGCCGGTAGAC 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGTGATCGGAAACGTAGAGCCGGAGATTTTAATCAAGAAGATCATGAAAGCCGGTAGAC 300
Query 301 ACGCCGAGCTATGGCCAACGTCAATGGGGAACAACATTAACAACGATTGTAACTATCAGA 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 ACGCCGAGCTATGGCCAACGTCAATGGAGAACAACATTAACAACGATTGTAACTATCAGA 360
Query 361 GGAAACCAAAGAAAGATAACGAAGAAACCAGTGGAGATGAAGACGACGATG--AA-AACA 417
||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||
Sbjct 361 AGAAACCAAAGAAAGATAACGAAGAAACTAGTGGAGATGAAGACGACGACGAAAACAACA 420
Query 418 ACAACAACAACGGCGGAGGTGACGGCGGTGGTGGA------GGT---GGAGG----TTGT 464
|||||||||||||||||||||||| |||||||||| ||| ||||| || |
Sbjct 421 ACAACAACAACGGCGGAGGTGACGTCGGTGGTGGAGGTGGTGGTGGAGGAGGAAACTT-T 479
Query 465 GATCAGGTGAAACAAGTTGTGACGTTCGTTAACGGTCAACTTCAACCTCAAGGAGATGGA 524
|||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 480 GATCAGGTTAAACAAGTTGTTACGTTTGTAAACGGTCAACTTCAACCACAAGGAGATGGA 539
Query 525 GCTCCTaagaagaagaagaaaaagaaaaagaagaagaaaagCTTAGGGAACACGACGGTA 584
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTCCGAAGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAAGCTTAGGGAACACGACGGTG 599
Query 585 GTGATGGAAGGAGGCggtggtggtggtggtggtggtggtgCTCCGCCGCAAAACGATGGA 644
|| |||||||||||||| || || ||||| |||||| | | ||| |||||||||||||||
Sbjct 600 GTAATGGAAGGAGGCGGCGGCGGCGGTGGCGGTGGT-G-G-TCCTCCGCAAAACGATGGA 656
Query 645 CCACCAGAGACAGTGATATACTCAGCTCCACCAGatcatcacataattcacgg---acct 701
|| |||||||||||||||||||||||||||| |||||||||||| || ||||| ||||
Sbjct 657 CCGCCAGAGACAGTGATATACTCAGCTCCACAAGATCATCACATTATACACGGACCACCT 716
Query 702 caaca--t-catcatcatcatcagcagaatcatcCGTATCCAATGGTTCACAGTCCTCCA 758
| || | ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 717 CCTCATCTACATCATCATCAGCAGCAGAATCATCCGTATCCAACGGTTCACAGTCCTCCA 776
Query 759 CGTCATCATCCACAACAAATGTACGGTCCGAGTCCGGGACCGCCGCCTCCTTCGTTTTAT 818
|||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||
Sbjct 777 CGTCATCATCCACAACAAATGTACGGGCCGGGTCCGGGACTGCCTCCTCCTTCGTTTTAT 836
Query 819 CATACTCAGCCTCAAACGGCGCCGTCTTATACGGTGAGTTACAACACGGTGCATGGGCCA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CATACTCAGCCTCAAACGGCGCCGTCTTATACGGTGAGTTACAACACGGTGCATGGGCCA 896
Query 879 AGTAA---CGGTGGGAATGAGACGGCGTCGTATTACACAGCTCCTCCTTCTCATCCGACG 935
| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 ATTAATAACGGTGGGAATGAGACGGCGTCGTATTACACGGCTCCTCCTTCTCATCCGACG 956
Query 936 TCGTATTATTCTTATGAGTACGTGGATACTGGCTACGAATCTCCACCGCCCGAATTTTAT 995
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 TCATATTATTCTTATGAGTACGTGGACACTGGCTACGAATCTCCACCGCCCGAATTTTAT 1016
Query 996 TCGTATAGATCTCAGCCGTCAGATTCGTTTGAAG-CACTTAGCGAAGGCAATCCAAACTC 1054
|||||||||||||| ||||| || |||||||| | |||| ||||||||||||||||||||
Sbjct 1017 TCGTATAGATCTCAACCGTCGGAATCGTTTGA-GTCACTAAGCGAAGGCAATCCAAACTC 1075
Query 1055 TTGTTACGTCATGTGA 1070
||||| ||| ||||||
Sbjct 1076 TTGTTGCGTTATGTGA 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5