BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489560
Length=3216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:97937... 4854 0.0
> AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:9793790-9798961
REVERSE LENGTH=3259
Length=3259
Score = 4854 bits (2628), Expect = 0.0
Identities = 3037/3233 (94%), Gaps = 33/3233 (1%)
Strand=Plus/Plus
Query 1 TTTCCCAGAAAAATTGTCGTTTTTGGTCT-CTGATTAACTTCAAAAGGTCTGTGTTTTTG 59
||||||||||||||||||||| | ||| | || |||||||||||||||||||||||||||
Sbjct 25 TTTCCCAGAAAAATTGTCGTTCTAGGT-TACTCATTAACTTCAAAAGGTCTGTGTTTTTG 83
Query 60 GCGAGAAATTGGTGGTGGAGCATTCATAGCTAATTCAAACAAGAACAAAATCACTAGGGT 119
||||||||||||||||||||| ||| | ||||||||||| | || ||||||||||||||
Sbjct 84 GCGAGAAATTGGTGGTGGAGCGTTCGTCGCTAATTCAAA-TA-AA-AAAATCACTAGGGT 140
Query 120 TTGGAGTTCTGGAATTTGGGATTAACCAGTAGTTATATACGAGTCATTACAGTTTTCTCG 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 141 TTGGAGTTCTGGAATTTGGGATTAACCAGTAGTTATGTACGAGTCATTACAGTTTCCTCC 200
Query 180 TTTCTTTGGGTTTCATTCAGATCAATTAATGGTTTCTGGAACTTCCATAATGCTTTACTA 239
||| ||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 201 TTTGTTTGGGTTTCATTAAGATCAATTAATGGTTTCTGGAACTTGCATTATGATTTACTA 260
Query 240 GAATCAACTTGTTGTAGGATCCGTATAAAGGACTGTCTTTTAGTTGCCTGAACAGTGTGA 299
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 261 GAATCAACTTGTTGTAGGATCCATATAAAGGACTGT-TTTTAGTCGCCTGAACAGTGTGA 319
Query 300 ATTCGATGGATTTGTCTTCTGATCATGTTGTTATGAAGCTTGTTGAAATGGGTTTTGAAA 359
||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||
Sbjct 320 ATTCGATGGATTTGTCTTCTGATCAACTCGTGATGAAGATTGTTGAAATGGGTTTTGAAA 379
Query 360 AGTTGGATGCTTTGGATGCTGTGAAAGCTGTAGGTGGTAAGTCATGTGATGATGCTGTGG 419
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 380 AGTTGGATGCTTTGGAGGCTGTAAAAGCTGTAGGTGGTAAGTCATGTGATGATGCTGTTG 439
Query 420 AGTATATTTTGAAGGGACATGATAGAACTGGTGGATTTGCGCCGGCTAGTTCATTATGTT 479
||||||||||||||||| || ||||||||||||| || ||||||||||| ||||||
Sbjct 440 AGTATATTTTGAAGGGAAATCATAGAACTGGTGGGTTCAAGCCGGCTAGTTTGCTATGTT 499
Query 480 CTAT-AGGGAGTATTAAGATTCTTGGTAAAAGAGCTATGCCATCTTCG--TT-TTCTTCG 535
|| | |||||||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 500 CT-TCAGGGAGTAATAAGATTCTTGGTAAAAGAGCTATGCCATCTTCGTTTTCTTCTTCG 558
Query 536 G-GTTCAAAGCGTCAGTCTAGTTTGCTTGACCATTTTAGATCTGTGGACCAGAACAAGAA 594
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 559 GAG-TCAAAGCGTCAGTCTAGTTTGCTTGACCATTTTAGATCTGTGAACCAGAACAAGAA 617
Query 595 AAAAGGCAACACCTTTGGGATTGCAGAAGTGAATTCTCAGTTAGAAACGGTGTCTTATAC 654
||||||| |||||||||||| || ||||||| | ||||||||||||||||||||| | |
Sbjct 618 AAAAGGCGACACCTTTGGGACTGTAGAAGTGGACTCTCAGTTAGAAACGGTGTCTGA-GC 676
Query 655 TTTTA-AAGAGCAGATAAAGTCTCTT-GCTCCAGTGTTTTTGGAGTCTAGTTGTTTTCCT 712
|| | ||||| || ||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 677 ATTCAGAAGAGGTGAGAAAGTCT-TTAGCTCCAGTGTTTATGGAGTCTAGTTGTTTTCCT 735
Query 713 GAAACAGAATTGTCAAATGGTTGCTCTGAGGCTTCATCAACGTGGGAGAAAAGAGTTAAC 772
||| | |||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 736 GAAGGACAATTGTTGAATGGTTGCTCAGAGGCTTCATCATCGTGGGAGAAAAGAGTTAAT 795
Query 773 TCTATACTACAAAACCGTTTTGGTATTTCATCCCTGAGAAGTTTCCAAAGAGAGGCTTTG 832
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TCTATACTACGAAACCGGTTTGGTATTTCATCCCTGAGAAGTTTCCAAAGAGAGGCTTTG 855
Query 833 TCAACATGGGTTGCTCATAAGGACTGTCTTGTTCTAGCTGCAACGGGATCTGGGAAATCT 892
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TCAACATGGGTTGCGCACAAGGACTGTCTTGTTCTAGCTGCAACGGGATCTGGGAAATCT 915
Query 893 CTTTGCTTCCAGATTCCTGCATTATTAACCGGAAAAGTTGTTGTTGTAATTTCACCTTTG 952
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 916 CTTTGCTTCCAGATTCCTGCATTATTAACGGGAAAAGTTGTTGTCGTAATTTCGCCTTTG 975
Query 953 ATAAGCCTGATGCATGATCAATGCCTCAAGCTATCAAGGCACAGAGTCTCTGCTTGTTTT 1012
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 976 ATAAGCTTGATGCATGATCAATGCCTCAAGCTATCAAGGCACAAAGTCTCTGCTTGTTTT 1035
Query 1013 CTTGGTTCAGGCCAACTTGATACTTGCATAGAAGAAAAAGCAATGCAGGGAATGTATCAG 1072
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 1036 CTTGGTTCAGGCCAACTTGATAATTGCATAGAAGAGAAGGCAATGCAGGGAATGTATCAG 1095
Query 1073 ATTATATATGTTTGCCCTGAGACAGTGGTTCGACTGATTAAACCACTCCAGAAGCTTGCA 1132
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1096 ATCATATATGTTTGCCCTGAGACAGTGGTCCGACTGATTAAACCACTCCAGAAGCTTGCA 1155
Query 1133 AAGACTCATGGAATTGCTCTTTTTGCAATTGATGAAGCGCATTGTGTATCAAAGTGGGGA 1192
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1156 AAGACTCATGGAATTGCTCTTTTTGCAATTGATGAAGCGCATTGCGTATCAAAGTGGGGA 1215
Query 1193 CATGATTTTCGTCCGCACTACAGGAGATTATCTGTGTTGCGGGAAAACTTCTGTGCCAGC 1252
|||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1216 CATGATTTCCGTCCGCACTACAGGAAATTATCGGTGTTGCGGGAAAATTTCTGTGCCAGC 1275
Query 1253 AATTTGGAATTCTTGGAATATGATGTACCGATAATGGCATTGACTGCTACAGCCACAGTT 1312
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1276 AATTTGGAATTCTTAGAATATGATGTACCGATAATGGCATTGACTGCAACAGCCACTGTT 1335
Query 1313 CACGTACAGGAAGATATTCTTGAGTCACTTCACCTGTCAAAGGAAACAAAAACTGTGCTT 1372
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1336 AACGTTCAGGAAGATATTCTTGAGTCACTTCACCTGTCAAAGGAAACAAAAATTGTACTT 1395
Query 1373 ACTTCATTTTTCAGGCCAAATCTACAATTTTCAGTTAAACATAGTCGAACCAAGTTTGCA 1432
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1396 ACTTCATTTTTCAGGCCAAATCTACAATTTTCTGTTAAACATAGTCGAACCAAGTTTGCA 1455
Query 1433 TCTTCATATGCAAAGGACTTCCAAAACTTAATTGACTTATACTCTGAAAAGAAAAAGTCT 1492
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1456 TCTTCATATGCAAAGGACTTCCAAAACTTAGTTGACTTATACTCTGAAAAGAAAAACTCT 1515
Query 1493 ACCGGGAAAAAGCTAGCAGTAATCTCACGAGAGTCAGAGGAGCAGACTGATTTTGGTTAT 1552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1516 ACCGGGAAAAAGCTAGCAGTAATCTCACGAGAGTCAGAGGAGCAGACTGATTTTGGTTCT 1575
Query 1553 CACGATGCTCAAAACATCCATGAGACAGATTATGATGAGGATGAAGAGGATCAAGAAAAC 1612
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1576 CACGATTCTGAAAACATCCATGAGACGGATTATGATGAGGATGAAGAGGATCAAGAAAAC 1635
Query 1613 TCTCTGGCAAAGAAAAACAGTTCAAATGGGAAAGAATTGTCAGAAGAGTATCTGGAAGAT 1672
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1636 TCCCTGGCAAAGAAAAACAGTTCAAATGGGAAAGAATTGTCAGAAGCGTATCTGGAAGAT 1695
Query 1673 GAAACCGACATTTTCCAGAGTGTTGATGATTGGGATGTGGCTTGTGGCGAGTTTTGCGCA 1732
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GAAACTGACATTTTCCAGAGTGTTGATGATTGGGATGTGGCTTGTGGCGAGTTTTGCGCA 1755
Query 1733 ATGCCTCCTTGTGAACTCCTGGATATACCTATCCCTTCTGAAAAGCAAAAGGATTTGGAA 1792
|||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 1756 ATGCCTTCTTGTGAACTCCTGGAAATACCTGTCCCTTCTGAAAAGCAAAAGGATTTAGAA 1815
Query 1793 GGACTGACAATCATATACGTTCCTACAAGAAAGGAGAGTGTCAACATTGCTAAATATCTT 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1816 GGACTGACAATCATATACGTTCCTACAAGAAAGGAGAGTGTCAACATTGCTAAGTATCTT 1875
Query 1853 TGTGGGGTTGGACTGAAGGCTGCAGCTTATAATGCATCGTTGCCaaaaaaaCATCTTAGA 1912
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1876 TGTGGGGTTGGACTGAAAGCTGCAGCTTATAATGCATCGTTGCCAAAAAAACATCTCAGA 1935
Query 1913 CAAGTTCACCAGGA-TTTCCACGAAAATAAGCTGCAGGTTGTTGTTGCCACAATTGCGTT 1971
||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1936 CAAGTGCACCAGGACTTT-CACGATAATAAGCTGCAGGTTGTTGTTGCCACAATTGCGTT 1994
Query 1972 TGGAATGGGAATTGACAAGAAAAATGTTCGGAAAATCATCCATTATGGTTGGCCGCAGAG 2031
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1995 TGGAATGGGAATTGACAAGAAAAATGTTCGGAAAATCATACATTATGGTTGGCTGCAGAG 2054
Query 2032 CTTGGAAGCATACTACCAAGAAGCTGGTCGAGCTGGAAGAGATGGCGAATTGGCTGAGTG 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 CTTGGAAGCATACTACCAAGAAGCTGGTCGAGCTGGAAGAGATGGCGAATTGGCTGAGTG 2114
Query 2092 TGTGCTCTATGCTGATCTATCGAGAGCACCAACACTTTTGCCAAGCCGTAGGAGCAAAGA 2151
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2115 TGTGCTCTATGCTGATCTATCGAGAGCACCAACGCTTTTGCCAAGCCGTAGGAGCAAAGA 2174
Query 2152 ACAGACAGAGCAAGCATATAAGATGCTATCTGATTGTTTTAGATATGGAATGAAGACTTC 2211
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 2175 ACAGACAGAGCAAGCATACAAGATGCTATCTGACTGTTTCAGATATGGAATGAACACTTC 2234
Query 2212 ACAATGTCGAGCGAAAATACTCGTGGAGTACTTTGGGGAGGATTTTAGTTCCAAGAAGTG 2271
||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2235 ACAATGTCGGGCCAAAATACTTGTGGAGTACTTTGGGGAGGAATTTAGTTCCAAAAAGTG 2294
Query 2272 TAACTTATGTGATGTTTGCAAGGAAGGGCCCCCGGAGCTAGTAAATGTACGAGAGGAAGC 2331
||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 2295 TAACTCATGTGATGTTTGCACTGAAGGGCCTCCGGAGCTAGTAGATGTACGAGAGGAAGC 2354
Query 2332 TAATCTTTTGTTTCAAGTAATCAATGCTTTTCAT--G----TAGACAATGACTCTGAGCA 2385
||||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 2355 TAATCTTTTGTTTCAAGTAATCACTGCTTTTCATTTGCAGGTAGACAATGACTCTGAGCA 2414
Query 2386 TGCACCATATGAAGATTATGGACTCGGCAACAGCAAACAAAAGAAATTATCCCACAAGCC 2445
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2415 TGCACCATATGAAGATTATGGACTCGGCAACAGCAAACAAAATAAATTATCCCACAAGCC 2474
Query 2446 AAATCTTCTGTTCTTCATCAGTAAAATCAGGGAACAGTGTCAAAAATTCAAGGAAACAGA 2505
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2475 AAATCTTCTGTTCTTCATCAGTAAACTCAGGGAACAGTGTGAAAAATTCAAGGAAACAGA 2534
Query 2506 TTGTCTTTGGTGGAAAGGTCTTGCCCGTATCATGGAAGCC-AAGGAATACATCAAAGAGC 2564
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2535 TTGTCTTTGGTGGAAAGGTCTTGCCCGTATCATGGAAGCCGAAGGA-TACATCAAAGAGA 2593
Query 2565 TGGATAACAAGGATCGTCGAGTTGAGATTAAATTTATACAACCAACAGAAAAAGGGAAGA 2624
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2594 TGGATAACAAGGATCGTCGAGTTGAGATTAAATTCATACAACCAACAGAAAAAGGGAAGA 2653
Query 2625 AGCAACTAGATTTCGAAGATGACAAACCACTCTATGTTTATCCAGAAGCCGACATGCTAC 2684
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2654 AACAACTAGATTTCCAAGATGACAAACCACTCTATGTTTATCCAGAAGCCGACATGCTAC 2713
Query 2685 TTTCGTTGAAACAAGACAGAACATACAGCGGATTCTCTGAATGGGGAAAAGGATGGGCAG 2744
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2714 TTTCGTTGAAACAAGATAGAACATACAGTGGATTCTCTGAATGGGGAAAAGGATGGGCAG 2773
Query 2745 ATCCAGAGATCCGGCGCCAGCGGTTagagagaagagaaaggaagccccgaagagaaagga 2804
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2774 ATCCAGAGATCCGGCGCCAGCGGTTAGAGAGAAGAGAAAGAAAGCCTCGAAGAGAAAGGA 2833
Query 2805 aaccccgaaaaaagcgaaCACGAGGACCTTCTTCGAAGAAGTTGCATCCATGGAGAAGCA 2864
||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 2834 AACCCCGAAAAAAACGAACACGAGGACGTTCTTCGACGAAGTTACATCCATGGAGAAGCA 2893
Query 2865 AAGAATAATAATCTCAACCCTCTTAAGTAAGCTCCTTCTTTGCTTTCAATCCCATATTGA 2924
|||||||| ||||||||||||||| ||||||||||||||||| | | |||||| ||||
Sbjct 2894 AAGAATAAGAATCTCAACCCTCTT---TAAGCTCCTTCTTTGCTCTGAGTCCCATCTTGA 2950
Query 2925 GGCAGAGACATCGCGCCATCGAGAAGTTAAAACTCGTAAATGAGGCCTTGGTCGCTGCGG 2984
|||| ||| | ||||||||||||||| | | || ||||| ||||| ||||| | ||||
Sbjct 2951 GGCATAGATACCGCGCCATCGAGAAGCTGAGGCTTGTAAACGAGGCTTTGGTAACGGCGG 3010
Query 2985 AAGAGAATGTAGCAAGGCTTCAAGAACGTCATGATGTGATCCTCAAAGAGATATGTTCTT 3044
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3011 AAGAGAACGTAACAAGGCTTCAAGAACGTCATGATGTGATTCTCAAAGAGATATGTTCTT 3070
Query 3045 ATTATCTCGTTAACACCGAGCTCCATGAAGCTTTGGTTTCAGCTCGTGCAGCCATTAATG 3104
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3071 ATTATCTCGTTAACACCGAGCTCCATGAAGCTTTGGTTTCATCTCGTGCAGCCATTAATG 3130
Query 3105 ATGCTTCTTCATTTGTCATGGAGCTTAGAAGACTACAGTTGAATATCTTAAACTCTTTTT 3164
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 3131 ATGCTTCTTCATTTGTCATGGAGCTTAGAAGATTACAGTTGAATATCTTAAACTCTCTTT 3190
Query 3165 CTTAATCA-AGTTTTTTGGTGCTTATTACGCTAATTAAAATTAGAGTTTGGGT 3216
|||||||| | ||||||| | |||||||| |||||||||| |||||||||||
Sbjct 3191 CTTAATCACA-TTTTTTG-TACTTATTACACTAATTAAAACCAGAGTTTGGGT 3241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159982381227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5