BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489561
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27670.1 | Symbols: HTA7 | histone H2A 7 | chr5:9792561-9793... 761 0.0
> AT5G27670.1 | Symbols: HTA7 | histone H2A 7 | chr5:9792561-9793456
REVERSE LENGTH=790
Length=790
Score = 761 bits (412), Expect = 0.0
Identities = 618/707 (87%), Gaps = 55/707 (8%)
Strand=Plus/Plus
Query 55 TTTTGGAGCTTTTGAAAAATGGAGTCATCACAAGCAACGACGAAGCCAGCGAGAGGTGCC 114
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 74 TTTTGGAGCTTTTGAACAATGGAGTCATCACAAGCAACGACGAAGCCAACGAGAGGAGCA 133
Query 115 GGAGGAAGAAAAGGAGGAGATAGGAAGAAGAGTGTTACG-AAATCTGTTAAAGCTGGTCT 173
|||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 134 GGAGGAAGGAAAGGTGGAGATAGGAAGAAGAGTGTTA-GTAAATCTGTTAAAGCTGGTCT 192
Query 174 TCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGTTACGCTATCCGATA 233
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 193 TCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGGTACGCTCTCCGATA 252
Query 234 CGGTGCCGGTGCTCCGGTTTACCTCGCCGCTGTTCTTGAATACCTCGCCGCCGAGGTTCT 293
|||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 253 CGGTTCCGGTGCTCCGGTTTACCTCGCCGCCGTTCTCGAATACCTAGCCGCCGAGGTACT 312
Query 294 TGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCT 372
Query 354 TTGTTTAGCGATAAGGAATGATGAAGAATTGGGGAAATTGCTTCATGGAGTTACGATTGC 413
||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||
Sbjct 373 ATGTTTAGCGATAAGGAACGATGAGGAATTGGGGAGATTGCTTCATGGAGTTACTATTGC 432
Query 414 AAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCTTCAGCTGC 473
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 433 TAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCAACAGCTTC 492
Query 474 T---------G---AGAAAGCTTCACCTGCTACCAAATCTCCTAAAAAGGCTTGATAA-- 519
| | |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 493 TTCTTCTCAAGCGGAGAAAGCTTC---TGCTACCAAATCTCCTAAGAAGGCTTGATAAAG 549
Query 520 --T--T-T---TG--G-TT-------ATATTCGGATCT-agaagaaagaagaaggaagaa 560
| | | || | || |||||||||||| ||| ||| ||||||| |||||
Sbjct 550 AATAGTATCGATGTTGCTTTTTGGTTATATTCGGATCTTAGATGAA-GAAGAAG-AAGAA 607
Query 561 gaaggagaaACATCTTGttttttttttttGTTTTAGGGGATTTGTGTAGGTTTTCTGAAA 620
|||| | || || |||||||||| ||||||| |||||||||||||| | ||||||
Sbjct 608 GAAG-A-AA-CAACTTGTTTTTT------GTTTTAGAGGATTTGTGTAGGTAT-CTGAAA 657
Query 621 TCTTCTTCTCTGTGTTTTGGTTTGTCT-ATGTAAAA-CCATTGGAAGATGATTATGTGTT 678
||||||||||| ||||||||||||||| |||||||| |||| ||||||||||||||| ||
Sbjct 658 TCTTCTTCTCTTTGTTTTGGTTTGTCTTATGTAAAAACCATGGGAAGATGATTATGT-TT 716
Query 679 -TTA-CGGAATTTGTAATCGAAAATAACTAATTTCTTGGATTAGTAA 723
||| || |||||||||| |||||||| ||| |||| ||||||||||
Sbjct 717 GTTAACGCAATTTGTAATGGAAAATAATTAAGTTCTGGGATTAGTAA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5