BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489562
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27660.1 | Symbols: | Trypsin family protein with PDZ domai... 1788 0.0
> AT5G27660.1 | Symbols: | Trypsin family protein with PDZ domain
| chr5:9789468-9792299 REVERSE LENGTH=1718
Length=1718
Score = 1788 bits (968), Expect = 0.0
Identities = 1144/1230 (93%), Gaps = 8/1230 (1%)
Strand=Plus/Plus
Query 1 TTGGATTTACGATGATGAATTTTCTGAGAAGAGCTGTATCATCATCTTCTAAACGAAGCG 60
|||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 54 TTGGATTTGCGATGATGAATTTTCTGAGAAGAGCTG--T-ATCATCTTCTAAAAGAAGCG 110
Query 61 AACTTATTCGTATCGTCGCTGTTGCTACCGCTACTTCTGGAATTGTATATGCTAATAGTA 120
| |||||||| ||| | |||||||||| ||||||||||||||| ||||||||| || ||
Sbjct 111 AGCTTATTCGCATCATTTCTGTTGCTACTGCTACTTCTGGAATTTTATATGCTAGTACTA 170
Query 121 ATCCAGATGCAAGAACGAGAATATCGCTTGCTATTCCTGAATCGGTTCGGGAATCTCTGT 180
|||||||||||||||| || ||||||||||||| |||||||| ||||| |||||| |||
Sbjct 171 ATCCAGATGCAAGAACTCGAGTATCGCTTGCTATACCTGAATCTGTTCGAGAATCTTTGT 230
Query 181 TGTTGCTGCCTTGGCGGATTTCACCGGGTTTGATTCATCGTCCTGATCAAAGCTTGTTCG 240
||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 231 CGTTACTGCCTTGGCAGATTTCACCGGGTTTGATTCATCGTCCTGAGCAAAGCTTATTCG 290
Query 241 GAAATTTCGCGTTTTCTTCGAGAGTTAGTCCAAAATCAGAAGCAGCTGTAAATGATGAGA 300
||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 291 GAAATTTCGTGTTTTCTTCGAGAGTTAGTCCGAAATCAGAAGCACCTATAAATGATGAGA 350
Query 301 AGGGAGTTCCTGTTGAAGCTTCGG--A-TAGTTCGAAACCAAGTAATGGCTACTTAGGGA 357
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 351 AGGGAGTTTCTGTTGAAGCTTCGGATAGTAGTTCGAAACCAAGTAATGGCTACTTAGGGA 410
Query 358 GAGATACTATAGCCAATGCTGCTGCTAGAGTCGGACCAGCGGTTGTCAATCTATCGGTTC 417
||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||
Sbjct 411 GAGATACTATAGCCAATGCGGCTGCTAGAATTGGACCAGCGGTTGTCAATCTTTCGGTTC 470
Query 418 CTCAGGGTTTCCATGGGATTTCTATGGGAAAAAGTATCGGTTCTGGAACTATCATTGATG 477
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 471 CTCAGGGTTTCCATGGGATATCTATGGGGAAAAGTATCGGTTCTGGAACGATCATTGATG 530
Query 478 CTGATGGCACGATATTGACTTGCGCTCATGTTGTAGTCGATTTTCAAAACATTCGTCAAT 537
|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 531 CTGATGGCACGATACTGACTTGCGCTCATGTTGTAGTTGATTTTCAGAACATTCGTCATT 590
Query 538 CATCAAAAGGGAGAGTTGATGTGACGTTGCAAGATGGTAGGACGTTTGAGGGTGTGGTGG 597
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CTTCTAAAGGGAGGGTAGATGTGACGTTGCAAGATGGTAGGACGTTTGAGGGTGTGGTGG 650
Query 598 TGAACGCTGATTTACAATCCGACATTGCATTAGTGAAGATAAAGTCAAAGACGCCATTGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGAACGCTGATTTACAATCCGACATTGCATTAGTGAAGATAAAGTCAAAGACGCCATTGC 710
Query 658 CAACTGCGAAACTTGGTTTTTCGAGTAAGCTTCGTCCTGGGGACTGGGTAATAGCTGTGG 717
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 711 CAACTGCTAAACTTGGTTTTTCGAGTAAGCTTCGTCCTGGAGACTGGGTAATAGCGGTAG 770
Query 718 GTTGTCCTCTTTCTCTCCAGAACACAATAACTGCTGGTATTGTCAGCTGTGTTGATCGCA 777
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 771 GTTGTCCTCTGTCTCTCCAGAACACAGTAACTGCTGGTATTGTCAGTTGTGTTGATCGCA 830
Query 778 AAAGCAGTGATTTGGGATTAGGAGGCACACGTAGAGAATATCTCCAAACAGACTG-TGCA 836
|||||||||||||||| |||||||||| || |||||| ||||||||||||||||| | |
Sbjct 831 AAAGCAGTGATTTGGGTTTAGGAGGCAAACATAGAGAGTATCTCCAAACAGACTGCT-CG 889
Query 837 ATCAATGCGGGAAACTCTGGTGGGCCTCTCGTAAATTTGGATGGAGAAGTGATTGGTGTT 896
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 890 ATCAATGCGGGAAACTCTGGTGGGCCTCTTGTAAATTTGGATGGGGAAGTGATTGGTGTT 949
Query 897 AATATCATGAAAGTTTTAGCTGCGGATGGTCTTGGATTTTCCGTGCCAATTGACTCGGTA 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 950 AATATCATGAAAGTTTTAGCTGCAGATGGTCTTGGATTTTCCGTGCCAATTGACTCGGTA 1009
Query 957 TCCAAAATCATCGAGCATTTCAAGAAGAGTGGTAGAGTTATTCGGCCATGGATTGGGTTA 1016
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1010 TCTAAAATCATCGAGCATTTCAAGAAGAGTGGTAGAGTTATTCGGCCATGGATTGGGCTC 1069
Query 1017 AAAATGATCGAACTCAATAAAATGATCATTGCTCAGCTAAAAGAACGAGACCCAATGTTT 1076
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1070 AAAATGGTCGAACTCAATAACTTGATCGTTGCTCAGCTAAAAGAACGAGACCCAATGTTT 1129
Query 1077 CCTGACGTCGAAAGAGGCATTCTTGTTCCTACGGTGATTCCGGGATCACCAGCTGATCGA 1136
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1130 CCTGATGTCGAAAGAGGCGTTCTTGTTCCTACGGTGATTCCGGGATCACCGGCTGATCGA 1189
Query 1137 GCTGGCTTTAAACCAGGTGATGTTGTTGTGAGATTTGACGGGAAGCCGATAATAGAGATA 1196
|||||||| |||||||| |||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1190 GCTGGCTTCAAACCAGGAGATGTTGTTGTGAGATTTGATGGGAAGCCGGTGATAGAGATA 1249
Query 1197 ATAGACGACAGAATCGGAAAGCGGATGCAA 1226
|| ||||||||| | || ||| ||||||||
Sbjct 1250 ATGGACGACAGAGTTGGGAAGAGGATGCAA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5