BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489570
Length=2279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27600.1 | Symbols: LACS7, ATLACS7 | long-chain acyl-CoA syn... 3448 0.0
> AT5G27600.1 | Symbols: LACS7, ATLACS7 | long-chain acyl-CoA synthetase
7 | chr5:9742576-9747005 FORWARD LENGTH=2353
Length=2353
Score = 3448 bits (1867), Expect = 0.0
Identities = 2173/2315 (94%), Gaps = 44/2315 (2%)
Strand=Plus/Plus
Query 1 AGAAAGAAGAAAAGATGAAATTTGCTTCGCCGGCACAACGTCGTCTCGAAACCATTCGAT 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 27 AGAAAGAAGAAAAGATGGAATTTGCTTCGCCGGAACAACGTCGTCTCGAAACCATTCGAT 86
Query 61 CTCACCTCTATACTTCTCCGGCCGACGATCAATCATC-TCTC--TTCCTCAACGCCACCG 117
||||| || ||||||||||| || ||||||||||||| |||| ||||||||||||||||
Sbjct 87 CTCACATCGATACTTCTCCGACCAACGATCAATCATCATCTCTATTCCTCAACGCCACCG 146
Query 118 CTTCTTCTGCTTCACCTTTC-TTAAACAAGGATGGCTACAGTGTTGTACTTCCAGAGAAG 176
|||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| |||
Sbjct 147 CTTCTTCTGCTTCACCTTTCTTTAAA-GAGGATAGCTACAGTGTTGTGCTTCCAGAAAAG 205
Query 177 CTTGATAATGGAAAATGGAATGTCTACAGATCTGCAAAG-TCGCCGACGAAACTCGTTAG 235
||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 206 CTTGATACTGGAAAATGGAATGTCTACAGATCT-AAAAGATCGCCTACGAAACTCGTTAG 264
Query 236 CAGGTTCCAGGATCATCCTGAAATCGGGACTTTGCATGACAATTTTGTATATGCTGTTGA 295
||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 265 TAGGTTCCCGGATCATCCTGAAATCGGGACTTTACATGACAATTTTGTACATGCTGTTGA 324
Query 296 AACATATCCTGAGAACAAGTATCTTGGTACACGAGTTCGGTCCGATGGAACCATTGGAGA 355
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 AACATATGCTGAAAACAAGTATCTTGGTACACGAGTTCGGTCCGATGGAACCATTGGAGA 384
Query 356 GTACTCATGGATGACATATGCAGAAACAGCTTCTGAACGACAAGCTATTGGTTCAGGACT 415
||| |||||||||||||||| |||| |||| ||||| |||||||| ||||||||||||||
Sbjct 385 GTATTCATGGATGACATATGGAGAAGCAGCGTCTGAGCGACAAGCCATTGGTTCAGGACT 444
Query 416 CCTGTTTCATGGAATTAACCAAGGAGCTTGTGTTGGACTCTATTTTATTAACAGACCAGA 475
| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 445 CTTGTTTCATGGAGTTAACCAAGGAGATTGCGTTGGACTCTATTTTATTAACAGACCAGA 504
Query 476 GTGGTTGGTTGTGGATCATGCTTGTGCAGCATATTCATTTGTCTCTGTTCCTTTATACGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 505 GTGGTTGGTTGTGGATCATGCTTGTGCAGCATATTCATTTGTCTCTGTTCCTTTATATGA 564
Query 536 TACACTTGGTCCAGACGCTGTTAAGTTCGTGGTGAATCATGCTACTCTGCAGGCTATATT 595
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 565 TACACTTGGTCCAGACGCTGTTAAGTTTGTGGTGAATCATGCTAATCTGCAAGCTATATT 624
Query 596 TTGTGTACCACAAACCTTGAATATTTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGTGTACCACAAACCTTGAATATTTTGCTAAGCTTCCTAGCGGAAATCCCATCCATTCG 684
Query 656 TCTCATTGTGGTGGTGGGAGGGGCGGACGAGCATTTGCCATCACTTCCTCAAGGATCTGG 715
|||||||||||||||||||||||| || |||||||||||||||||||||| |||| ||||
Sbjct 685 TCTCATTGTGGTGGTGGGAGGGGCTGATGAGCATTTGCCATCACTTCCTCGAGGAACTGG 744
Query 716 AGTCA-ATATTGTATCATACCAAAAGCTTTTGAGTCAGGGTCGAAGTAGCTTACATCCAT 774
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 745 AGTCACA-ATTGTATCATACCAAAAGCTATTGAGTCAGGGTCGAAGTAGCTTACATCCAT 803
Query 775 TTTCCCCTCCAAAACCCGAAGACATTGCAACCATATGCTACACAAGTGGAACCACAGGAA 834
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTTCGCCTCCAAAGCCAGAAGACATTGCAACCATATGCTACACAAGTGGAACCACAGGAA 863
Query 835 CACCAAAGGGTGTTGTGTTGACTCATGGAAACTTGATTGCAAATGTCGCCGGTTCCAGTG 894
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 864 CACCAAAGGGTGTTGTGTTGACTCATGGAAACTTGATCGCGAATGTCGCTGGTTCCAGTG 923
Query 895 TGGAAGCAGAATTCTTACCTTCAGATGTTTACATATCATATCTTCCTTTGGCGCACATAT 954
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TGGAAGCAGAATTCTTTCCTTCAGATGTTTACATATCATATCTTCCTTTGGCGCACATAT 983
Query 955 ATGAACGTGCAAATCAGATTATGGCTGTGTATGGTGGTGTTACTGTCGGTTTCTATCAGG 1014
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 984 ATGAACGTGCAAATCAGATTATGGGGGTGTATGGTGGTGTTGCTGTCGGTTTCTATCAGG 1043
Query 1015 GGGATGTCTTCAAGCTGATGGATGATTTTGCTGTGTTAAGGCCAACAATATTCTGTAGTG 1074
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1044 GGGATGTCTTCAAGCTGATGGATGATTTTGCTGTGTTAAGACCAACAATATTCTGTAGTG 1103
Query 1075 TCCCCCGCTTATATAATCGAATATATGATGGAATCACTAGTGCCGTAAAATCATCTGGGG 1134
|||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1104 TCCCTCGCTTATATAATCGAATATATGATGGCATTACAAGTGCCGTAAAATCATCTGGGG 1163
Query 1135 TTATTAAACAAAGGCTGTTTC-AAGTTGCCTATAACTCAAAGAAGCAAGCGATCATAAAT 1193
|| | ||| ||||||| |||| || ||||||||||||||||||||||||||||||| |||
Sbjct 1164 TTGTGAAAAAAAGGCT-TTTCGAAATTGCCTATAACTCAAAGAAGCAAGCGATCATTAAT 1222
Query 1194 GGACGGAATCCGTCTGCATTTTGGGACAAACTGGTCTTCAACAAAATAAAAGAAAAGCTT 1253
|| |||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1223 GGGCGGACTCCTTCTGCATTTTGGGACAAGCTGGTGTTCAACAAAATAAAAGAAAAGCTT 1282
Query 1254 GGTGGACGGGTTCGCTTTATGGGGTCAGGTGCTTCTCCATTGTCACCCGATGTCATGGAT 1313
|||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1283 GGTGGACGGGTTCGGTTTATGGGGTCTGGTGCTTCTCCTTTGTCACCTGATGTCATGGAT 1342
Query 1314 TTCTTGAGAGTATGCTTTGGATGTTCGGTGCGTGAAGGGTATGGTATGACCGAGACTTCT 1373
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TTCTTGAGAATATGCTTTGGATGTTCGGTGCGTGAAGGGTATGGTATGACCGAGACTTCT 1402
Query 1374 TGTGTCATAAGCGCTATGGATGATGGTGACAATTTATCTGGCCATGTTGGATCCCCTAAT 1433
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1403 TGTGTCATAAGTGCTATGGATGATGGTGACAATTTATCTGGCCATGTCGGTTCCCCTAAT 1462
Query 1434 CCAGCGTGTGAGGTAAAACTTGTGGATGTTCCCGAAATGAATTACACATCAGATGATCAA 1493
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1463 CCAGCTTGCGAGGTAAAACTTGTGGATGTTCCCGAAATGAATTACACATCAGACGATCAA 1522
Query 1494 CCATACCCACGTGGGGAAATCTGTGTAAGAGGACCAATCATCTTCAAAGGCTACTACAAA 1553
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 CCATACCCACGTGGTGAAATCTGTGTAAGAGGACCAATCATCTTCAAAGGCTACTACAAA 1582
Query 1554 GATGAGGAACAAACGAGAGAAATTCTTGATGGAGATGGCTGGCTACACACAGGAGATATC 1613
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 GATGAAGAACAAACGAGAGAAATTCTTGATGGAGATGGCTGGCTACACACAGGAGATATC 1642
Query 1614 GGGTTGTGGTTACCTGGTGGTCGGCTCAAGATCATAGACAGGAAGAAGAACATATTTAAG 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GGGTTGTGGTTACCTGGTGGTCGGCTCAAGATCATAGACAGGAAGAAGAACATATTTAAG 1702
Query 1674 TTGGCGCAAGGAGAATATATAGCACCAGAGAAAATCGAAAATGTTTATACCAAATGCAGA 1733
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1703 TTGGCGCAAGGAGAATATATAGCACCAGAGAAGATCGAAAATGTTTATACCAAATGTAGA 1762
Query 1734 TTTGTTTCGCAGTGTTTCATACACGGTGATAGCTTCAATTCCTCTCTGGTAGCTATAGTT 1793
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1763 TTCGTTTCGCAGTGTTTCATTCACGGTGATAGCTTCAATTCCTCTCTAGTAGCTATAGTT 1822
Query 1794 TCAGTTGACCCAGATGTTATGAAAGATTGGGCTGCATCAGAAGGCATCAAGTATGAGCAT 1853
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 TCAGTCGACCCCGAAGTTATGAAAGATTGGGCTGCATCAGAAGGCATCAAGTATGAGCAT 1882
Query 1854 CTAGGACAGCTCTGTAACGATCCAAGAGTACGTAAGGCTGTTCTTGCTGAGATGGATGAC 1913
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1883 CTAGGACAGCTCTGTAACGATCCAAGAGTGCGAAAGACTGTTCTTGCTGAGATGGATGAC 1942
Query 1914 CTTGGAAGAGAAGCTCAGTTGAGAGGATTTGAGTTTGCAAAGGCTGTGACTTTGGTGCCA 1973
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1943 CTTGGAAGAGAAGCTCAGTTGAGAGGGTTTGAGTTTGCAAAGGCTGTGACTTTGGTGCCA 2002
Query 1974 GAACCATTCACCTTAGAGAATGGACTTTTGACACCAACATTCAAGATAAAGAGACCTCAA 2033
|||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2003 GAACCATTCACCTTGGAGAATGGACTTCTCACACCAACATTCAAGATAAAGAGACCTCAA 2062
Query 2034 GCAAAAGCTTACTTTGCAGAAGCAAT-ATCCAAAATGTATGCGGAAATCGCAGCCTCGAA 2092
|||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2063 GCAAAAGCCTACTTTGCAGAAGCAATTAGC-AAAATGTATGCGGAAATCGCAGCCTCGAA 2121
Query 2093 CCCCATGCCTTCTAAACTGTGATGATTTA--CATTACTTAAAAGTGTTTCtttttttt-- 2148
|||||| ||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 2122 CCCCATTCCTTCTAAACTGTGATGCTTTTTGCTTTGCTTAAAAGTGTTTCTTTTTTTTTG 2181
Query 2149 -ATTACAA-GGTAATTGTAGAACTGT-AAAAGATCGGATTAG-A-G-G-TAGATCGATCA 2201
||||||| ||||||||||||||||| ||||||||||||||| | | | |||||||||||
Sbjct 2182 TATTACAAAGGTAATTGTAGAACTGTTAAAAGATCGGATTAGGATGAGGTAGATCGATCA 2241
Query 2202 T--GAAATAAAACAGATTCATG----------CT--G-TA--GTTTTCCAGAATAAAGGA 2244
| ||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 2242 TTTGAAATAAAACAGATTCATGGTGTAATTTTCTTTGATACTGTTTTCCAGAATAAAGGA 2301
Query 2245 AGAGCAGACTATGATCCTAATCCTGAAATGGATGA 2279
|| ||||||||| |||||||||||||||||||||
Sbjct 2302 AG--CAGACTATG-TCCTAATCCTGAAATGGATGA 2333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113101827885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5