BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489572
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27550.1 | Symbols: | P-loop containing nucleoside triphosp... 2119 0.0
> AT5G27550.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:9727454-9731341
REVERSE LENGTH=2496
Length=2496
Score = 2119 bits (1147), Expect = 0.0
Identities = 1210/1241 (98%), Gaps = 2/1241 (0%)
Strand=Plus/Plus
Query 8 CTACTAAGCTTGGAACTCTGGAAAAACAGTACTTGGAAGAGTCATCAGAGAGGAAACGAT 67
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTACTAAGCTTGGAGCTCTTGAAAAACAGTACTTGGAAGAGTCATCAGAGAGGAAACGAT 382
Query 68 TATACAATGAAGTGATCGAACTCAAGGGAAATATCAGGGTCTTTTGCAGATGCAGGCCTC 127
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 383 TATACAATGAAGTGATCGAACTCAAGGGAAATATCAGAGTCTTTTGCAGATGCAGACCTC 442
Query 128 TAAACCAAGCTGAAATAGCAAATGGCTT-TGCTTCTGTAGCTGAGTTTGAGCCAACACAG 186
||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||
Sbjct 443 TAAACCAAGCTGAAATAGCCAATGG-TTGTGCTTCTGTAGCTGAGTTTGATACAACACAG 501
Query 187 GAAAACGAGCTCCAGATACTTTCATCTGATTCCTCCAAGAAGCATTTTAAGTTTGACCAT 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 502 GAAAACGAGCTCCAGATACTTTCATCTGATTCCTCCAAGAAGCATTTTAAATTTGACCAT 561
Query 247 GTTTTTAAGCCAGAAGATGGCCAAGAGGCTGTTTTTGCACAGACAAAACCTATAGTTACT 306
|| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 562 GTCTTTAAGCCTGACGATGGCCAAGAGACTGTTTTTGCACAGACAAAACCTATAGTTACT 621
Query 307 TCGGTGCTGGATGGGTATAATGTCTGCATATCTGCCTATGGCCAAACTGGAACTGGCAAG 366
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 622 TCGGTGCTGGATGGGTATAATGTCTGCATATTTGCCTATGGCCAAACGGGAACTGGCAAG 681
Query 367 ACATTTACCATGGAGGGAACACCAGAGAATAGAGGAGTGAACTATAGGACCTTAGAAGAA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACATTTACCATGGAGGGAACACCAGAGAATAGAGGAGTGAACTATAGGACCTTAGAAGAA 741
Query 427 CTATTTTGCTGTTCAGAAAGCAAACGTCATCTCATGAAGTTTGAGCTATCGGTTAGCATG 486
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 742 CTATTTCGCTGTTCAGAAAGCAAAAGTCATCTCATGAAGTTTGAGCTATCAGTTAGCATG 801
Query 487 TTGGAGGTTTATAATGAGAAGATAAGGGACCTCTTGGTAGATAACTCAAACCAGCCCCCT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TTGGAGGTTTATAATGAGAAGATAAGGGACCTCTTGGTAGATAACTCAAACCAGCCCCCT 861
Query 547 AAAAAGTTGGAGGTTAAGCAATCAGCAGAAGGGACACAAGAAGTCCCAGGATTAGTCGAA 606
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 862 AAAAAGTTGGAGGTTAAGCAATCAGCAGAAGGGACGCAAGAAGTCCCAGGATTAGTCGAA 921
Query 607 GCTCAAGTTTACAATACAGATGGAGTGTGGGATCTGCTCAAGAAAGGATATGCTGTTCGG 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GCTCAAGTTTACAATACAGATGGAGTGTGGGATCTGCTCAAGAAAGGATATGCTGTTCGA 981
Query 667 TCTGTGGGTTCAACTGCTGCAAATGAGCAAAGCAGCCGCTCTCATTGCTTGCTGCGAGTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TCTGTGGGTTCAACTGCTGCAAATGAGCAAAGCAGCCGCTCTCATTGCTTGCTGCGAGTG 1041
Query 727 ACCGTGAAGGGAGAGAATTTGATAAATGGTCAGAGAACGAGAAGTCATCTTTGGTTAGTG 786
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ACAGTGAAGGGAGAGAATTTGATAAATGGTCAGAGAACGAGAAGTCATCTTTGGTTAGTG 1101
Query 787 GACTTGGCTGGCAGTGAGCGAGTAGGAAAGGTAGAAGTTGAAGGAGAAAGGCTGAAAGAA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GACTTGGCTGGCAGTGAGCGAGTAGGAAAGGTAGAAGTTGAAGGAGAAAGGCTGAAAGAA 1161
Query 847 TCTCAATTTATCAATAAGTCGCTTTCGGCACTCGGTGATGTTATCTCTGCCCTTGCATCC 906
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1162 TCTCAATTTATCAATAAGTCGCTTTCAGCACTCGGTGATGTTATCTCTGCCCTTGCATCC 1221
Query 907 AAAACAAGCCACATTCCTTACAGAAACTCAAAGCTCACCCATATGCTGCAAAACTCTTTA 966
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1222 AAAACAAGCCACATTCCTTACAGAAACTCAAAGCTGACCCATATGCTGCAAAACTCTTTG 1281
Query 967 GGTGGAGATTGCAAGACATTAATGTTTGTCCAGATTAGTCCGAGTTCTGCCGATCTAGGA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GGTGGAGATTGCAAGACATTAATGTTTGTCCAGATTAGTCCGAGTTCTGCCGATCTAGGA 1341
Query 1027 GAGACCCTTTGCTCCTTGAACTTTGCAAGTAGAGTCCGGGGAATCGAAAGTGGACCTGCC 1086
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1342 GAGACCCTTTGCTCCTTGAACTTTGCAAGTAGAGTCCGAGGAATCGAAAGTGGACCTGCC 1401
Query 1087 CGAAAACAGGCGGATGTGTCTGAACTCCTCAAGTCAAAACAAATGGCCGAGAAGCTGAAA 1146
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1402 CGAAAACAGGCTGATGTCTCTGAACTCCTTAAGTCAAAACAAATGGCCGAGAAGCTGAAA 1461
Query 1147 CACGAGGAAAAGGAAACAAAGAAGCTGCAGGACAATGTGCAGTCATTACAGCTACGCCTC 1206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1462 CACGAGGAAAAGGAAACAAAGAAGCTGCAGGACAATGTGCAGTCACTACAGCTACGCCTC 1521
Query 1207 ACTGCTAGAGAACACATATGCAGAGGACTTCAAGATAAGGT 1247
||||||||||||||||||||| |||||||||||||||||||
Sbjct 1522 ACTGCTAGAGAACACATATGCCGAGGACTTCAAGATAAGGT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5