BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489574
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27540.1 | Symbols: MIRO1, emb2473 | MIRO-related GTP-ase 1 ... 3779 0.0
> AT5G27540.1 | Symbols: MIRO1, emb2473 | MIRO-related GTP-ase
1 | chr5:9722425-9727454 FORWARD LENGTH=2452
Length=2452
Score = 3779 bits (2046), Expect = 0.0
Identities = 2290/2403 (95%), Gaps = 35/2403 (1%)
Strand=Plus/Plus
Query 16 aaaaaaaaaaaaGAGCTTA-CTAATTTTTCTCCTCCTTCACGGCAAATCGTCACCGCCAC 74
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAAAAAAAAAAACAGCTTACCAAATTTTTCTCCTCCTTCACGGCAAATCGTCACCGCCAC 74
Query 75 ATTTTCTCCTAAACTAGAGAATCTAGGGTTTTCTAAGGGTTTTTAATCTTCGTGCTTCTC 134
||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 75 ATTATCTCCCAAACTA-AGAATCTAGGGTTTTCTAAGGGTTTTTAATCTTCGTCCTTCTC 133
Query 135 TTCTTCTCTAGTTTTGCTTCTCCTTGGTTGCAGTTTCAGATGGCGAGATACGCTGCTGGT 194
| |||||| | | || | | |||| ||||||||||||||||||||||||||||||
Sbjct 134 TCCTTCTCCA-----G-TT-T--TAGGTTTCAGTTTCAGATGGCGAGATACGCTGCTGGT 184
Query 195 ACGGTTGATTGTCCTGGTTCACCCAAATCTGTACGAATCGTTGTGGTTGGAGATAAGGGT 254
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 185 GCGGTTGATTGTCCTGGTTCTCCCAAATCTGTGCGAATCGTTGTGGTTGGTGATAAGGGC 244
Query 255 ACTGGAAAATCAAGCTTGATTGTCGCTGCAGCTACTGATTCTTTCCCTCCCAATGTTCCT 314
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 245 ACTGGAAAATCAAGCTTGATTGTTGCTGCAGCCACTGATTCTTTCCCTCCCAATGTCCCT 304
Query 315 CCTGTTTTGCCTGACTACAAGTTGCCTGTTGAATTCTTCCCTGATGGTATACCCGTCACC 374
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 305 CCTGTTTTGCCTGATTACAAGTTGCCTATTGAATTCTTCCCTGATGGTATACCCGTCACC 364
Query 375 ATTGTCGACACTTCCTCGAGGCCAGAAGATAGGGACATGGTTGCTGAGGAATTGAAGCAT 434
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 365 ATTGTCGACACTTCCTCGAGGCCAGAAGATAGGGACATTGTTGCTGAGGAATTGAAGCGC 424
Query 435 GCAGATGCAGTAGTTTTGACATATGCCTGTGATCGACCTGAGACTCTCGAACGTTTGAGT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GCAGATGCAGTAGTTTTGACATATGCCTGTGATCGACCTGAGACTCTCGAACGTTTGAGT 484
Query 495 GAATACTGGCTTCCAGAGCTTCGGCGATTGGAGGTAAAAATTCCTATTATAGTAGCAGGG 554
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 485 GAATACTGGCTTCCAGAGCTTCGGCGATTAGAGGTAAAAATTCCTATTATCGTAGCAGGA 544
Query 555 TGTAGGCTTGACTTCAGAGACGACAATAACCAGGTCAGCCTCGAACAAGTGATGTCACCT 614
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGTAAGCTTGACTTCAGAGACGACAATAACCAGGTCAGCCTCGAACAAGTGATGTCACCT 604
Query 615 ATAATGCAGCAGTTTCGGGAGATAGAGACTTGTATCGAGTGTTCTGCCCTCAAGCAACTC 674
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 ATAATGCAGCAGTTTCGGGAGATAGAGACTTGTATCGAGTGTTCTGCCCTGAAGCAACTC 664
Query 675 CAGGCACAAGAAGTTTTCTATTATGCACAAAAGACTGTCCTTCACCCAACAGGACCTCTG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CAGGCACAAGAAGTTTTCTATTATGCACAAAAGACTGTCCTTCACCCAACAGGACCTCTG 724
Query 735 TTTGATCAAGATTCCCAGGCACTGAAGCCCCGGTGTGTAAGGGCATTGAAGCGTATCTTT 794
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 725 TTTGATCAAGATTCCCAGGCACTGAAACCCCGGTGTGTAAGGGCATTGAAGCGTATCTTT 784
Query 795 ATACTCTGTGATCATGACAGAGATGGTGCTCTTAGCGAGGCTGAGCTAAATGATTTTCAG 854
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 785 ATACTCTGTGATCATGACAGAGATGGTGCTCTTAGCGAGGCTGAGTTAAATGATTTTCAG 844
Query 855 GTCAAGTGTTTCCATGCACCATTGCAGCCTTCTGAAATTGAAGGTGTTAAGAGGGTTGTG 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GTCAAGTGTTTCCATGCACCATTGCAGCCTTCTGAAATTGAAGGTGTTAAGAGGGTTGTG 904
Query 915 CAAGAAAAGTTGCCAGAAGGTGTGAATGAAAGAGGACTGACAGTGACTGGCTTCCTGTTT 974
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 905 CAAGAAAAGTTGCCAGAAGGTGTGAATGAAAGAGGACTGACAGTCACTGGCTTCCTATTT 964
Query 975 TTACATGCACTTTTTATTGAGAAAGGGAGGCTCGAGACTACATGGACTGTACTGAGGAAG 1034
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 965 TTACATGCACTTTTTATTGAGAAAGGGAGGCTTGAGACTACGTGGACTGTACTCAGGAAG 1024
Query 1035 TTTGGGTATAATAATGATATAAGACTTGCTGAAGAATTGCTCCCATCTACAATATTCAAG 1094
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1025 TTTGGGTATAATAATGATATAAGACTTGCTGAAGAATTGCTTCCATCTGCAATATTCAAG 1084
Query 1095 GGAGCTCCCGATCAGAGTTTTGAGTTGACAAATGCAGCAATCGAATTCCTGAAAGGAATG 1154
||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1085 CGAGCTCCTGATCAGAGCTTTGAGTTGACAAATGCAGCAATCGATTTCCTGAAAGGAATG 1144
Query 1155 TATATGTTGTTTGATGACGACCAGGATAATAATCTGAGACCTCAAGAGATAGAGGATCTT 1214
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1145 TATATGTTGTTTGATGACGACCAGGATAACAATCTGAGACCTCAAGAGATCGAGGATCTT 1204
Query 1215 TTTTCAACTGCACCTGAAAGTCCTTGGAAGGAAGCTCCTTATGAGGATGCTGCGGAGAAA 1274
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1205 TTTTCAACTGCACCTGAAAGTCCATGGAAGGAAGCTCCTTATGAAGATGCTGCGGAAAAA 1264
Query 1275 ACTGCCCTTGGAGGACTATCATTTGACGCTTTCCTGTCAATGTGGTCACTAATGACACTA 1334
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1265 ACTGCCCTTGGAGGACTATCATTTGACGCTTTCCTGTCAATGTGGTCACTGATGACACTA 1324
Query 1335 TTAGAACCGGCTCGGAGTGTGGAAAATTTGATTTACATTGGATTCCCGGGTGATCCATCG 1394
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1325 TTAGAACCGGCTCGGAGTGTGGAGAATTTGATTTACATTGGATTCCCGGGTGATCCATCG 1384
Query 1395 ACTGCCATTCGTGTTACTAGGAGAAGACGTTTAGATCGCAAAAAGCAGCAATGTGAAAGA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1385 ACTGCCATTCGTGTTACTAGGAGAAGACGTTTAGATCGCAAAAAGCAGCAATGTGAACGA 1444
Query 1455 AAAGTTTTCCAGTGCTTTGTTTTTGGACCTAATAATGCTGGAAAATCTTCATTGCTGAAT 1514
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1445 AAAGTTTTCCAGTGCTTTGTTTTTGGACCTAATAATGCTGGAAAATCTGCATTGCTGAAT 1504
Query 1515 TGCTTTCTTGGAAGGTCATATGCTGATAACCAGGAATCAACTACTGATGAGCGTTATGCA 1574
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TGCTTTCTTGGAAGGTCATATACTGATAACCAGGAATCAACTACTGATGAGCGTTATGCA 1564
Query 1575 GTAAATATGGTCGATGAATCTGGGGGTGCAAAGAAAACTCTTATCATGAGGGAAATTCCA 1634
|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1565 GTAAATATGGTCGATGAATC-GGG--TGCTAAGAAAACTCTTATCATGAGGGAAATTCCA 1621
Query 1635 GAAGATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTGGCTGCATGTGACATAGCT 1694
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1622 GAAGATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTAGCTGCATGTGACATAGCT 1681
Query 1695 GTCTTCGTGTATGACAGTTCTGATGAGTCGTCATGGAAGAGAGCGACTCAGTTGCTTGTA 1754
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1682 GTCTTCGTGTATGACAGTTCTGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGCTTGTA 1741
Query 1755 GAAGTTGCAACTTATGGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCTGCA 1814
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1742 GAAGTTGCAAATTATGGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCA 1801
Query 1815 AAAGACGATCTTGATTCATCTCCTATTTCCATACAAGAATCCACCAGGATGACACAAGAT 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 AAAGACGATCTTGATTCATCTCCTATTTCCATACAAGAATCCACCAGGATGACACAAGAT 1861
Query 1875 ATGGGAATAGAGCCTCCAGTATCCATCAGTTCCAAATTGGGGGATTTCAACAACTTATTC 1934
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1862 ATGGGAATAGAGCCTCCGGTATCAATCAGCTCCAAATTGGGGGATTTCAACAATTTATTC 1921
Query 1935 CGCAAAATCTTAACTGCAGCACAACACCCTCATTTGAGCATTCCAGAGACCGAAGCAGGA 1994
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1922 CGCAAAATCTTAACTGCAGCACAACATCCTCATTTGAGCATTCCAGAGACCGAAGCAGGC 1981
Query 1995 AAAAGCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGCTGTTTCAATTGGG 2054
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1982 AAAAGCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGCCGTTTCCATTGGT 2041
Query 2055 GCTGCTGCTGTAGTTGTTGGGCTGGCTGCATACCGTGTGTATGCCACAAGAAAGAGTTCG 2114
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2042 GCTGCTGCTGTGGTCGTTGGGCTGGCTGCATACCGTGTGTATGCCACAAGAAAGAGCTCG 2101
Query 2115 TCTACCTGAGAAGATTGAGACCGAGCAATCCAATCTCTTAAGGTATGAACATGGAAAGAA 2174
||| |||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 2102 TCTGCCTGAGAAGATTGAGAATGAACAATCCAATCTCTTAAGGTATGAACACGGAAAGAG 2161
Query 2175 GATAGCAAATCTCGTGTTC-GAAGTTTGTTTATCGTTCTCAAG-TTTTAAACCAACTTGA 2232
||||||||||||||||| | || |||||||||||||||||||| ||||| | |||||||
Sbjct 2162 GATAGCAAATCTCGTGTACTGA-GTTTGTTTATCGTTCTCAAGGTTTTA--C-AACTTGA 2217
Query 2233 TCCAAAGTACT--------CT-TT-TTAGAAGTTTAATGGAAATGGGCTTTGTTTGAAGT 2282
|||| |||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 2218 TCCAGAGTACTGTTGAGTACTGTTCTTAGAAGTTTAATGGAAATGGGCTTTGTTTGAAGT 2277
Query 2283 AATTGTGGAAGAAGATCTGTAGCAA-CACAAACATTTAGGGACAAGATAAAA-GAGAACA 2340
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2278 AATTGTGGAAGAAGATCTGTAGCAAACACAAACATTTAGGGACAAGATAAAAAGAGAACA 2337
Query 2341 TAGTCAATAGACATTGTGTTGAATTTTTTCAATAACAATAGAACTTTGTCTCATTGATGA 2400
|||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 2338 TAGTCAATAGACATTGTGTTGAATTT---CAATAACAATAGAACTTTGTCTCCTCGATGT 2394
Query 2401 TGT 2403
|||
Sbjct 2395 TGT 2397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119326695465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5