BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489576
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27520.1 | Symbols: PNC2 | peroxisomal adenine nucleotide ca... 2039 0.0
AT3G05290.1 | Symbols: PNC1 | peroxisomal adenine nucleotide ca... 942 0.0
> AT5G27520.1 | Symbols: PNC2 | peroxisomal adenine nucleotide
carrier 2 | chr5:9714382-9716354 REVERSE LENGTH=1358
Length=1358
Score = 2039 bits (1104), Expect = 0.0
Identities = 1269/1346 (94%), Gaps = 22/1346 (2%)
Strand=Plus/Plus
Query 1 TGTTTAAAATCCCAAGACGGAAA-CA--CT-TTGTGAT--CCCATACCATC-ATT-TC-T 51
||||||||||||||||||| ||| || || ||||||| ||||||||||| ||| || |
Sbjct 17 TGTTTAAAATCCCAAGACGAAAATCATTCTCTTGTGATCGCCCATACCATCAATTATCAT 76
Query 52 CTCT-TGgaagaagaagaaaaagaagaagaagaTATGGGTGTTGATTTGGATTTGGAATC 110
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TTCTCTCTTCGAAGAAGAAGAAGAAGAAGAAGATATGGGTGTTGATTTGGATTTGGAATC 136
Query 111 TATCTCCGAAGCCACCTCCGGAGCTATTGGATCTCTTCTCAGCACTACCATTTTATACCC 170
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 137 CATCTCCGAAGCCACCTCCGGAGCCATTGGATCTCTTCTCAGCACCACCATTTTATACCC 196
Query 171 TCTTGATACCTGCAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGTCAGCAAAAATA 230
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 197 TCTTGATACCTGTAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGTCAGCAGAAATA 256
Query 231 CAGATACCTGTCAGATGTGTTTTGGGAAGCAATTTCATCAGGAAATGTTCTCTCCTTGTA 290
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CAGATATCTGTCAGATGTGTTTTGGGAAGCAATTTCATCAGGAAATGTTCTCTCCTTGTA 316
Query 291 TCAAGGCCTTGGGACTAAGAATTTGCAGTCCTTTATTTCGTCCTTCATCTATTTCTATAG 350
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 317 TCAAGGCCTTGGGACTAAGAATTTGCAGTCTTTTATTTCGTCCTTCATCTATTTCTATAG 376
Query 351 TTATAGCTATTTCAAGAGGTTACATTCTCAAAGGATTGGTTCTAAGTCGATTGGAACAAA 410
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 377 TTATAGCTATTTCAAGAGGTTACATTCCCAAAGGATTGGTTCTAAGTCTATTGGAACAAA 436
Query 411 GGCAAATCTGCTCATTGCTGCTGCTGCTGGGGCTTGTACCTCTGTGTTGACCCAACCTCT 470
||| ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 437 GGCTAATCTCCTCATTGCTGCTGCTGCTGGTGCTTGTACCTCTGTTTTGACTCAACCTCT 496
Query 471 AGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGAAAATCTAAAGGGTTGTGGAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGAAAATCTAAAGGGTTGTGGAA 556
Query 531 GACTCTAACCGATGGTTCATGGGGAAATGCATTTGATGGCCTTGGGATTTCTCTTTTATT 590
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GACACTAACAGATGGTTCATGGGGAAATGCATTTGATGGCCTTGGGATTTCTCTTTTATT 616
Query 591 GACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAGAACCTTCTTGA 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 617 GACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAGAACCTCCTTGA 676
Query 651 GAAAAG-AAAGGCAAAATCCAGCAAAGATTCTTCCCCTGTAGTCCTCTCTGCCTTTATGG 709
||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 677 -AAAAGGAAAGGCAAAATCCAACAAAGATTCTTCCCCTGTAGTTCTCTCTGCCTTTATGG 735
Query 710 CGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACCGTCATCACATATCCAGCAATCA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACCGTCATCACATATCCAGCAATCA 795
Query 770 GGTGCAAGGTGATGATTCAAGCAGCAGATGACTCAAAGGAAAATGAAACGAAGAAGCCCA 829
|||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 796 GGTGCAAGGTTATGATTCAAGCAGCAGATGACTCGAAGGAAAATGAAGCGAAGAAGCCCC 855
Query 830 GAAAAAGAATCAGGAAAACGATTCCCGGGGTAGTCTATGCTATATGGAAAAAAGAAGGGA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GAAAAAGAATCAGGAAAACGATTCCCGGGGTAGTCTATGCTATATGGAAAAAAGAAGGGA 915
Query 890 TCTTAGGATTCTTCAAAGGCTTGCAGGCTCAGATCTTAAAGACAGTTTTGAGCTCGGCGT 949
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 916 TCTTAGGCTTCTTTAAAGGCTTGCAGGCTCAGATCTTAAAGACAGTTCTGAGCTCAGCAT 975
Query 950 TGCTACTAATGATCAAGGAGAAAATCACTGCAACCACATGGATTCTCATTCTAGCAATAA 1009
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TACTACTAATGATCAAGGAGAAAATCACTGCAACCACATGGATTCTCATTCTAGCAATAA 1035
Query 1010 GAACTCTGTTTGTCACAAAGGGTAGGTTGAAAAGTCCATAAAC-AT-AGCCCTTCTGCAA 1067
||||||||||||||||||||| ||| |||||||||||||||| || | || ||| ||||
Sbjct 1036 GAACTCTGTTTGTCACAAAGGCTAGATTGAAAAGTCCATAAAAGATTA-CCATTCCGCAA 1094
Query 1068 GAGTCCCAAGCCCAAGCAAGTGCAAAGTCATTTGTTTGGCGATCTGAATCGAATGATCAA 1127
|||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1095 GAGTCCCAAGGCCAAGTAAGAGCAAAGTCATTTGTTTGGCGATCAGAATCGAAAGATCAA 1154
Query 1128 GTATTGTAGTCTTTCTCATTTTAAGAACTATTGATAATTTTTAGTAAAGATCTTATTGTA 1187
||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 1155 GTATTGTAGTCTTTCTCATTTCAAGAACTATTGATTTTTTTTAGTAAAGATCTGATTGTA 1214
Query 1188 ---GGTCCACATAAAGCTTCATGTTGTTGCCAGATTGAGTTTCTGGGCTTAGAGATTTTT 1244
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1215 CTAGGTCCACATAAAGCTTCTTGTTGTTGCCAGATTGAGTTTCTGGGCTTAGAGATTATT 1274
Query 1245 CTCTGGTTATTGTGTAGTTTATGTTTGTTTTCTTCAGCTGTAATAAATAT-GGGGATTTC 1303
|| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1275 CTATGGTTATTATGTAGTTTATGTTTGTTTTCTTCAGCTGTAATAAA-ATTGGGGATTTA 1333
Query 1304 TACT-TTTCTCCAAATTTTCATGTAC 1328
|||| ||| |||||||||||||||||
Sbjct 1334 TACTATTT-TCCAAATTTTCATGTAC 1358
> AT3G05290.1 | Symbols: PNC1 | peroxisomal adenine nucleotide
carrier 1 | chr3:1505890-1507702 REVERSE LENGTH=1296
Length=1296
Score = 942 bits (510), Expect = 0.0
Identities = 806/946 (85%), Gaps = 31/946 (3%)
Strand=Plus/Plus
Query 100 GATTTGGAATCTATCTCCGAAGCCACCTCCGGAGCTATTGGATCTCTTCTCAGCACTACC 159
||||||||||| | || ||||| ||||| ||||||||||| || ||||| || || ||
Sbjct 98 GATTTGGAATCGGTGTCGGAAGCAACCTCGGGAGCTATTGGGTCGCTTCTGAGTACAACG 157
Query 160 ATTTTATACCCTCTTGATACCTGCAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGT 219
|| || || ||||||||||| || ||||| ||||||||||||||| |||| | ||| |||
Sbjct 158 ATCTTGTATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGT 217
Query 220 CAGCAAAAATACAGATACCTGTCAGATGTGT-TTTGGGAAGCAATTTCAT-CAGGA-AAT 276
||||||||||||||||| || || ||||| | | ||||| |||||||| | |||| ||
Sbjct 218 CAGCAAAAATACAGATATCTTTCCGATGT-TATGTGGGAGGCAATTTC-TAAAGGACAA- 274
Query 277 GTTC-TCTC-CTTGTATCAAGGCCTTGGGACTAAGAATTTGCAGTCCTTT-ATTTCGTC- 332
| || | || | |||||||||||||||| ||||||||||| |||| |||| ||||| ||
Sbjct 275 G-TCTTTTCAC-TGTATCAAGGCCTTGGAACTAAGAATTTTCAGT-CTTTCATTTC-TCA 330
Query 333 CTTCATCTA-TTTCTATAGTTATAGCTATTTCAAGAG-GTTACATTCTCAAAGGATTGGT 390
|||||||| ||| ||||| ||||||||||||||||| ||| ||| | |||||| ||||
Sbjct 331 GTTCATCTACTTT-TATAGCTATAGCTATTTCAAGAGAGTT-CATAGTGAAAGGACTGGT 388
Query 391 TCTAAGTCGATTGGAACAAAGGCAAATCTGCTCATTGCTGCTGCTGCTGGGGCTTGTACC 450
||||| || |||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 389 TCTAAATCAATTGGAACTAAGGCTAATTTGCTCATTGCTGCTGCTGCTGGGGCTTGTACT 448
Query 451 TCTGTGTTGACCCAACCTCTAGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGA 510
||||| || | || |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 449 TCTGTCTTAATTCAGCCTCTAGATACAGCTTCATCAAGGATGCAAACTAGTGAGTTTGGA 508
Query 511 AAATCTAAAGGGTTGTGGAAGA-CTCTAACCGATGGTTCATGGGGAAATGCATTTGATGG 569
|||| |||||||||||||||| || |||| || |||||||||| | | |||||||||||
Sbjct 509 GAATCAAAAGGGTTGTGGAAGACCT-TAACAGAGGGTTCATGGGCAGACGCATTTGATGG 567
Query 570 CCTTGGGATTTCTCTTTTATTGACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCA 629
||| ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 568 CCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAGTATACAGTGTTTGATCA 627
Query 630 GCTGAAACAGAACCTTCTTGAG-AAAAGAAAGGCAAAATCC-AGCAAAGATTCTTCCCCT 687
|||||||||| |||||||| || | || ||| |||||| || || || | |||||| ||
Sbjct 628 GCTGAAACAGCACCTTCTTAAGCAGAA-AAATGCAAAAGCCGAG-AATGGTTCTTCTCCG 685
Query 688 GTAGTCCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACC 747
||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 686 GTAGTGCTCTCTGCCTTTATGGCGTTTGTCTTAGGTGCGGTCTCCAAAAGTGTTGCCACC 745
Query 748 GT-CATCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCAGCAGATGACTCAAA 806
|| | |||||||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 746 GTGC-TCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGAGTCGAA 804
Query 807 GGAAAATGAAACGAAGAAGCCCAGAAAAAGAATCA-GGAAAACGATTCCCGGGGTAGTCT 865
|||||| ||||| |||||||| |||| ||||| || ||||||| ||||| ||||| || |
Sbjct 805 GGAAAACGAAACAAAGAAGCCGAGAAGAAGAA-CAAGGAAAACAATTCCAGGGGTTGTGT 863
Query 866 ATGCTATATGGAAAAAAGAAGGGATCTTAGGATTCTTCAAAGGCTTGCAGGCTCAGATCT 925
|||| ||||||| ||||||||| || ||||| ||||| || |||||||||||||| ||||
Sbjct 864 ATGCCATATGGAGAAAAGAAGGAATGTTAGGGTTCTTTAAGGGCTTGCAGGCTCAAATCT 923
Query 926 TAAAGACAGTTTTGAGCTCGGCGTTGCTACTAATGATCAAGGAGAAAATCACTGCAACCA 985
| ||||| || |||||||| || |||||| | |||||||||||||||||||| ||||| |
Sbjct 924 TGAAGACTGTCTTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACAGCAACGA 983
Query 986 CATGGATTCTCATTCTAGCAATA---AGAACTCTGTTTGTCACAAA 1028
||||||||||||||||||| || ||||| |||||| |||||||
Sbjct 984 CATGGATTCTCATTCTAGCTATCCGTAGAACCCTGTTTCTCACAAA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65361109590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5