BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489577
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27510.1 | Symbols: | Protein kinase superfamily protein | ... 1227 0.0
AT5G12090.1 | Symbols: | Protein kinase superfamily protein | ... 344 8e-94
AT2G41910.1 | Symbols: | Protein kinase superfamily protein | ... 56.5 4e-07
> AT5G27510.1 | Symbols: | Protein kinase superfamily protein
| chr5:9713173-9714078 FORWARD LENGTH=906
Length=906
Score = 1227 bits (664), Expect = 0.0
Identities = 822/900 (91%), Gaps = 4/900 (0%)
Strand=Plus/Plus
Query 9 AAACGAAGAATACATCAAGTTTTTAGGTGAAGGTGCTTACAGTTTTGTTGATCTCTTCAA 68
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 9 AAACGAAGAATACGTCAAGTTTTTAGGTGAAGGTGCTTATAGTTTCGTTGATCTCTTCAA 68
Query 69 GTACACAAAAAGCGACGGCTCTTCGTTTCTCGCCGCCGTAAAAAGCTCCGATGAAGAAGA 128
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
Sbjct 69 GTACACAAAAAGCGACGGCTCTTCTTTTCACGCCGCCGTAAAAAGCTCCGATGATGAAAA 128
Query 129 CTCTCTCCTTACAGAGA-TTCGGATTCTTTCCGAACTCAGAGGATGTCCGAGAATCATAC 187
||||||||||| ||| | ||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 129 CTCTCTCCTTAAAGA-ATTTCATATTCTTTCCGAACTCAAAGGATGTCCAAGAATCATAC 187
Query 188 AATACTTTGGTAACGATTTGGAAGAGGGTTTTGACTATAAGGGAAACAGAGTCTACAAGT 247
||| |||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 188 AATGCTTTGGTAACGACTTGGAAGAGGGTTTCGACGATAAAGGAAACAGAGTCTACAAGT 247
Query 248 TGCTTCTTGAGTACGCAACCGAAGGTAGTTTAAGCGATTTCATGAATAATTACACAGATA 307
||||||| ||||||||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 248 TGCTTCTCGAGTACGCATCCGAAGGTAGTTTAAGCGATTTCATGAACAATTGCGTGGATA 307
Query 308 GAAAATTACCAGACTTGATGATAAGAGACTTCACGCGTATGATTCTCGAAGGTTTGGTAT 367
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 308 GAAAGTTACCAGACTTGATGATTAGAGACTTCACGCGTATGATTCTCCAAGGTTTGGTAT 367
Query 368 CAATTCATAGCCACGGTTATGTTCATTGTGATCTCAAGTCAGATAATCTCCTTGTCTTCA 427
| |||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||
Sbjct 368 CGATTCATAGCCACGGTTATGTTCATTGCGATCTCAAGCCAGAAAATGTCCTTGTCTTCC 427
Query 428 AGTGTAGAGATTCTTACGAATTGAAGATTTCTGATTTTGGAATCTCGTTAGAAGTCGGAG 487
||| |||||||||||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 428 CTTGTGGAGATTCTTACGAAGTGAAGATTTCTGATTTTGGACTCTCATTACAAGTCGGAG 487
Query 488 AAATTCCTGATCACTGGAAAATCGAATACCCTTTTGTTGGAACCCCTAATTACATGCCGC 547
|| |||||||||||||||||||||||||||| ||||||||||| | ||| |||||||| |
Sbjct 488 AAGTTCCTGATCACTGGAAAATCGAATACCCGTTTGTTGGAACGCTTAACTACATGCCTC 547
Query 548 CGGAGTCTCTTCAAGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCATTAGGGTGTT 607
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 548 CGGAGTCTCTACATGACGGTGTTGCCAATAAAACCCTAGATTTGTGGTCATTAGGGTGTT 607
Query 608 TAGTGTTGGAGATGTATGTGGGTAAGAAGCCATGGCTAGGGTTTA-ATCCTGACGATTTT 666
|||||||||||||||||||| |||||||||||||| ||||||||| | ||||| ||||||
Sbjct 608 TAGTGTTGGAGATGTATGTGTGTAAGAAGCCATGGATAGGGTTTATA-CCTGAGGATTTT 666
Query 667 GTGTCTATCCTCTCTAATGGTAATGCTCCAGAGATTCCCGAGAGTTTGCCTTGCGATGCA 726
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 667 GTGTATATCCTCTCTAATGGTAACCCTCCAGAGATTCCCGAGAGTTTGCCTTGCGACGCA 726
Query 727 AGGGAGTTTATTCAAACGTGTTTCGCAAGGAACCCTAAGGAGAGAGGTACTGCCTCTGAG 786
|||| ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 727 AGGGCGTTTATTCAAAAGTGTTTCTCAAGGAACCCTAAGGAGAGAGGTACTGCGTCTGAG 786
Query 787 CTGCTGTCTCATCGGTTTTTGCGTCGAGGAAAATGGAAATCGAAGATGACTACTCCATTT 846
||||||||||||||||||||||||| || ||||| ||||| |||||||| | |||||||
Sbjct 787 CTGCTGTCTCATCGGTTTTTGCGTCAAGAAAAATCGAAATTGAAGATGATTTCTCCATTC 846
Query 847 AACCGGCTTAAGTTTAATAAAATTTTAAATAAATTCTTGAGGTTGAAGAATTTCCTCTGA 906
|||| ||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 847 AACCTGCTAAAGTTTAAGAAATTTTTAAACAAGCTCTTGAGGTTGAAGAATTTCCTCTGA 906
> AT5G12090.1 | Symbols: | Protein kinase superfamily protein
| chr5:3909703-3910877 FORWARD LENGTH=1110
Length=1110
Score = 344 bits (186), Expect = 8e-94
Identities = 537/697 (77%), Gaps = 61/697 (9%)
Strand=Plus/Plus
Query 141 AGAGATTCGGATTCTTTCCGAACTC-AGAGGATGTCCGAGA-ATC-ATACAATACTTTGG 197
|||||| | |||||| || |||||| || |||| ||| | | ||| || | || |||
Sbjct 222 AGAGATACAGATTCTGTCTGAACTCAAG-GGATATCCCA-ACATCGTTA-TTTGCTATGG 278
Query 198 TA-ACGATTTGGAAGAGGGTTTTGACTATA-AGGGAAACAGAGTCTACAAGTTGCTTCTT 255
| ||||||||||||| | ||| || | | | ||| ||| ||| ||||| |||||||||
Sbjct 279 -AGACGATTTGGAAGAAGATTTCAACGA-ACACGGACACAAAGTTTACAAATTGCTTCTT 336
Query 256 GAGTACGCAACCGAAGGTAGTTTAAG--CGATTTCATGAATAATTA-CACAGATAGAAAA 312
|| ||||||| |||||| |||||||| | | |||||| | ||||| | | || |||||
Sbjct 337 GAATACGCAAACGAAGGGAGTTTAAGTTC-A-TTCATGGAGAATTATC-CCGACAGAAAG 393
Query 313 TTACCAGACT-TGATGATAAGAGACTTCACGCGTATGATTCTCGAAGGTTTGGTATCAAT 371
|||||||| | |||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 394 TTACCAGA-TCCGATGATCAGAGACTTCACGCGGATGATTCTCGAAGGATTGGTCTCAAT 452
Query 372 TCATAGCCACGGTTATGTTCATTGTGATCTCAAGTCAGATAATCTCCTTGTCTTCAAGT- 430
||||| ||||||||||||||||| |||||||| || ||||| || ||| ||||| |
Sbjct 453 GCATAGTCACGGTTATGTTCATTGCGATCTCAAATCCGATAACCTTCTTATCTTC-TCTC 511
Query 431 GTAGAGA-T-T-C-T--TACGAATTGAAGATTTCTGATTTTGGAATCTCGTTAG--AAGT 482
| | ||| | | | | | ||| || ||||||| ||||||||||| || | ||| ||||
Sbjct 512 GGAAAGATTCTGCTTCGTGCGAGTTAAAGATTTTTGATTTTGGAAACT-G-TAGACAAGT 569
Query 483 CGGAGAAATTCCTGATCACTGGAAAA-TCGAATACCCTTTTGTTGGAACCCCTAATTACA 541
||||||| |||| ||||||||||||| | || ||||| | ||| ||||| ||| | | |
Sbjct 570 CGGAGAAGTTCCGGATCACTGGAAAAGT-GATTACCCGTATGTGGGAACGCCTGAGT-C- 626
Query 542 TGCCGCCGGAGTCTCTTCAAGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCATTAG 601
| | ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 627 T----------T-TCTTC--GACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCGTTAG 673
Query 602 GGTGTTTAGTGTTGGAGATGTATGTGGGTAAGAAGCCATGGCTAGG-GTTTAATCCTGAC 660
|||| ||||||||| |||| ||| ||| || |||||||| | | ||| | | || |
Sbjct 674 GGTGCTTAGTGTTGAAGATTTATACAGGTGAGCAGCCATGGGAAAGAGTT-ACTAGTGTC 732
Query 661 GATTTTGTGTCTATCCTCTC-TAATGGT-AATGCTCCAGAGATTCCCGAGAGT-T-TGCC 716
||||| ||| | | || | | ||||| || |||||| | ||||| || | | | ||||
Sbjct 733 GATTTCGTGAATTTTCT-TAGTGATGGTGAA-GCTCCAAATATTCCTGA-A-TATGTGCC 788
Query 717 TTGCGATGCAAGGGAGTTTATTCAAACGTGTTTCGCAAGG-AACCCTAAGGAGAGAGGTA 775
||| |||||||| ||||||||| ||||||||||||||||| ||| | || |||||||||
Sbjct 789 TTGTGATGCAAGAGAGTTTATTGAAACGTGTTTCGCAAGGGAACA-TGAGAAGAGAGGTA 847
Query 776 CTGCCTCTGAGCTGCTGTCT-CATCGGTTTTTGCGTC 811
| || |||||| || | | | |||| ||||||| |||
Sbjct 848 CCGCGTCTGAGTTGTTAT-TGCATCCGTTTTTGTGTC 883
> AT2G41910.1 | Symbols: | Protein kinase superfamily protein
| chr2:17496956-17498077 FORWARD LENGTH=1122
Length=1122
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 439 TCTTACGAATTGAAGATTTCTGATTTTGGA 468
||||||||||||||||||||||||||||||
Sbjct 469 TCTTACGAATTGAAGATTTCTGATTTTGGA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5