BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489578
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27490.1 | Symbols: | Integral membrane Yip1 family protein... 1458 0.0
> AT5G27490.1 | Symbols: | Integral membrane Yip1 family protein
| chr5:9702835-9704719 REVERSE LENGTH=1210
Length=1210
Score = 1458 bits (789), Expect = 0.0
Identities = 872/911 (96%), Gaps = 9/911 (1%)
Strand=Plus/Plus
Query 21 GCTGTGAG-AAGAG-AAAAGAAGAA-G--GAAGATGATGTCCGGTGGGAGCTACACGAAC 75
|||||||| ||||| |||||||||| | || ||||||||||||||| ||||||||||||
Sbjct 37 GCTGTGAGAAAGAGAAAAAGAAGAACGAAGATGATGATGTCCGGTGGAAGCTACACGAAC 96
Query 76 ATCGATCACCAGAAAGTTTCTGGATCTGTACCCGCCGTTCCAGATCCTGGCCATGTCACC 135
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 97 ATCGATCACCAGAAAGTTTCTGGATCTGTACCCGCTGTTCCAGATCCTGGACATGTCACC 156
Query 136 GTCAAATTCGCTGACTCAAATCTACAAACGTTTCCTCCATCTGCTACTCAGGGAAAGATT 195
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GTCAAATTCGCAGACTCAAATCTACAAACGTTTCCTCCATCTGCTACTCAGGGAAAGATT 216
Query 196 TCTGGTGGTACTAATCCTCCTCGAGATGCTGACGATACATTTTCGAGGCCCGTGAATGG- 254
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 217 TCTGGTGGTACTAATCCTCCTCGAGATGCTGACGATACATTTTCGAGGCCTGTGAATGGT 276
Query 255 --TACAGATGAACCTCAGTCTGGTGGTTGGCTCCATAGATTCACTGTTGGTGCTTACAAG 312
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 277 ACTACAGATGAACCTCAGTCTAGTGGTTGGCTTCATAGATTCACTGTTGGTGCTTACAAG 336
Query 313 CCTTACTTTGATGTGGACACTTCAGATGTCGTAGAGAGACTCAAAGAATCGCTCTTTCCG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CCTTACTTTGATGTGGACACTTCAGATGTCGTAGAGAGACTCAAAGAATCGCTCTTTCCG 396
Query 373 TTCAGAGGAACATTTACAGAAAAGACAGCCAACAACCCTGATTTATACGGGCCATTCTGG 432
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 397 TTTAGAGGAACATTTACGGAAAAGACAGCCAACAACCCTGATTTGTACGGGCCATTCTGG 456
Query 433 ATATGCACAACATTGATCTTTGTAGCAGCATCCATAGGAACATTTGTTACATACATAGCA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATATGCACAACATTGATCTTTGTAGCAGCATCCATAGGAACATTTGTTACATACATAGCA 516
Query 493 CACAAATTGAAGAAACAGGAATGGAACTACGATATTAATCTGGTGACTTGGTCTGCAGGA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CACAAATTGAAGAAACAGGAATGGAACTACGATATTAATCTGGTGACTTGGTCTGCAGGA 576
Query 553 GTGTTCTACGGTTATGTAACTATTGTCCCTCTCGCATTATATGTGGTTCTCAAGTACTTC 612
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 577 GTTTTCTACGGTTATGTAACTATTGTCCCTCTCGCATTATACGTTGTTCTCAAGTACTTC 636
Query 613 TCTGCACCATCAGGCTTAGTCCAACTCTTCTGTCTCTACGGATATTCCTTATTCGTCTTC 672
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 637 TCTGCACCATCAGGCTTAGTCCAACTCTTCTGTCTATACGGATATTCCCTATTCGTCTTC 696
Query 673 ATCCCTGCATTGTGTCTATCCGTTGTGCCACTAGAGATCTTCAGATGGGTGATCGCGGGT 732
||||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||||
Sbjct 697 ATCCCTGCATTGTGTCTCTCTGTTGTGCCATTAGAGATCTTCAGATGGGTTATTGCGGGT 756
Query 733 TTAGCTGGATTCATGTCTGCAACATTTGTGGCATTGAACCTCAAAGCACATATTAACTCT 792
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 757 TTAGCTGGATTCATGTCTGCTACATTTGTAGCATTGAATCTCAAAGCACATATTAACTCT 816
Query 793 GCAGGAGAGAGATGGTTCTTGATTGTAGTCAGCATTTTTCTTCTACAGCTCGCGCTTTCA 852
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 817 GCAGGAGAGAGATGGTTCTTGATTGTGGTCAGCATATTTCTTCTACAGCTCGCTCTCTCA 876
Query 853 GTCGTGCTGAAGCTATATCTGTTCACTGTCACCGTATAAATTATTCCCTCAGGGGGAAGA 912
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 877 GTAGTGCTGAAGCTATATCTGTTCACTGTCACCGTATAAATTATTCCCTCAGGGG-AAGA 935
Query 913 AGCTATGATTT 923
||||||| |||
Sbjct 936 AGCTATGTTTT 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5