BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489579
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ... 2431 0.0
> AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA
ligase | chr5:9695008-9697389 FORWARD LENGTH=1670
Length=1670
Score = 2431 bits (1316), Expect = 0.0
Identities = 1499/1585 (95%), Gaps = 22/1585 (1%)
Strand=Plus/Plus
Query 1 CAAATTTCTGTTTCTGCTTTTGATTCACAGAGAAAGAGCCCGAAA-ATGTTGGATATCAA 59
||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 34 CAAATTTCTGTGTCTGCTTTTGATTCACAGAGAAGGAGCAGGAAAGATGTTGGATATCAA 93
Query 60 TCTATTTCGTGAAGAAAAAGGGAACAATCCGGAGATTATCAGAGAATCGCAACGCCGGAG 119
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 94 TCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGCAACGCCGGAG 153
Query 120 ATTTGCCAGCGTTGAAGTCGTGGATGAGATCATTAAACTCGACAAAGAATGGCGTCAGCG 179
|||||||||||||||| |||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 154 ATTTGCCAGCGTTGAAATCGTCGATGAGATCATTAAGCTGGACAAGGAATGGCGTCAGCG 213
Query 180 TCAATTTGAAGTTGATAGCTTCAGGAAA-GAGTTCAACAAGCTCAATAAGCAAGTGGCGC 238
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 214 TCAATTTGAAGTTGATAGCTTCA-GAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGC 272
Query 239 AGCTCAAAATTAAAAAAGAAGATGCCACTGAGATTATTCAACAGACCGAGAAAAACAAAC 298
||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 273 AGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAAC 332
Query 299 AAGATTCTACCGCAAAGGAGGCGGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT 358
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 333 AAGATTCTACTGCAAAGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGT 392
Query 359 TGGAGAC-AGTTGGTAACTTGATTCATGACTCTGTTCCTA-TTGATAAGGACGAGGCTAA 416
||||| | ||||||||| ||| | ||||| |||||||| | |||||||||||||||||||
Sbjct 393 TGGAG-CAAGTTGGTAATTTGGTCCATGATTCTGTTCC-AGTTGATAAGGACGAGGCTAA 450
Query 417 TAATCTTGTCATTAAACTGTGGGGTGAAAAGCGGCTTTCTACGCCTGGTCTGAAGCTGAA 476
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 451 TAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAA 510
Query 477 AAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAAT 570
Query 537 CGCTGGAGCCAGAGGCTTTTTCTTAAAAGGAGATGGATTGATGCTTAACCAAGCTCTTAT 596
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 571 CGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTAT 630
Query 597 CAACTTTGGGCTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAGCCTCCTTTTTT 656
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 631 CAACTTTGGGTTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTT 690
Query 657 CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTA 750
Query 717 CAAGGTGACTGGTGAAGGAGATGACAAATACCTTATTGCAACTGCTGAGCAGCCTCTTTG 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 751 CAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTG 810
Query 777 TGCATACCATCTTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA 836
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTA 870
Query 837 CTCGTCCTGCTTTAGAAAAGAAGCTGGTTCGCATGGAAGAGACACTCTTGGTATTTTCCG 896
||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 871 CTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCG 930
Query 897 TGTTCACCAGTTTGAGAAGATTGAACAGTTTTGCATCACCAGTCCTAATGAGAATGCCTC 956
|||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||
Sbjct 931 TGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTC 990
Query 957 GTGGGAAATGCTCGATGAGATGATGAAGAACTCAGAAGATTTTTACCAAGCGCTAAAGCT 1016
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 991 GTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCTAAAACT 1050
Query 1017 TCCATACCAAATCGTGTCGATAGTCTCTGGAGCATTGAACGATGCAGCAGCCAAAAAGTA 1076
||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 1051 TCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAGTA 1110
Query 1077 TGACTTGGAAGCTTGGTTTCCTTCGTCGGAGACTTTCAGAGAGCTTGTGTCCTGTTCCAA 1136
|| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 1111 CGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATTCAGGGAGCTTGTGTCTTGTTCCAA 1170
Query 1137 CTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATACGGTCAGAAAAAGAGCAATGA 1196
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1171 CTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAGCAATGA 1230
Query 1197 GCAGACAAAGCAGTATGTGCATATGCTGAATTCAACACTTACTGCAACAGAGAGGACCAT 1256
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1231 GCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACTGCAACAGAGAGGACCAT 1290
Query 1257 TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATCCCTGAGGTTCTGCA 1316
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1291 TTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGGTTCTGCA 1350
Query 1317 GCCGTTTATGGGTGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC 1376
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GCCGTTTATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATAC 1410
Query 1377 CAAAGGGAAGAAATCGAAAGCTTAATTG-T-TAT--ATT-ATGATTAACGACTCTTCTGT 1431
||||||||||||||||||||||| |||| | ||| ||| | ||||||||||||||||||
Sbjct 1411 CAAAGGGAAGAAATCGAAAGCTTGATTGATGTATTGATTCA-GATTAACGACTCTTCTGT 1469
Query 1432 TTTCTTGAAATTGATGAAACACTTCGATAAAGTTTCTTTATTTTGTGGAATCGTTTTTGG 1491
||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1470 TTTCTTGAAATTGATGAAACACTTCGATAAA-TTTCTTTACTTTGTGGAATT-TTTTTGG 1527
Query 1492 A-TTCCTGTTATTTTACCAGGACCTTTTATTTATCATCTGATTTCTTG-TAGTAGTTT-T 1548
| ||| |||||||||||||||||| || |||||||||||||||||| | ||||| ||| |
Sbjct 1528 ACTTC-TGTTATTTTACCAGGACCGTT-ATTTATCATCTGATTTCT-GCTAGTA-TTTGT 1583
Query 1549 TCCTTTTCTTTGGCGAATCATTGTT 1573
||||||| |||||||||||||||||
Sbjct 1584 TCCTTTTGTTTGGCGAATCATTGTT 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5