BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489582
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27450.1 | Symbols: MVK, MK | mevalonate kinase | chr5:96906... 2037 0.0
> AT5G27450.1 | Symbols: MVK, MK | mevalonate kinase | chr5:9690607-9693225
FORWARD LENGTH=1459
Length=1459
Score = 2037 bits (1103), Expect = 0.0
Identities = 1229/1290 (95%), Gaps = 8/1290 (1%)
Strand=Plus/Plus
Query 1 AACACGATTCTCGTTGGCTTGAGACATTTTTCCATCTTCTAGGTTTCTTTCTTTTGCTCA 60
|||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||
Sbjct 1 AACACGATTCTCGTTGGCTTCAGACA-TTTTCCATCTTCTAGGTTTCTTTC-TTT-CTCA 57
Query 61 GCAATTTCCAGCAAAATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTCGCAGGG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 58 GCAATTTCCAGGAAAATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTTGCAGGG 117
Query 121 GAACACGCGGTTGTCCATGGATCCACCGCAGTAGCTGCCGCCATTGATCTCTACACTTAC 180
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 GAACACGCTGTTGTTCATGGATCCACCGCTGTAGCTGCCGCCATTGATCTCTACACTTAC 177
Query 181 GTTACTCTCCGCTTTCCTCTTCAATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTC 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTACTCTCCGCTTTCCTCTTCCATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTC 237
Query 241 AAGGACATTTCCTTGGAGTTTTCCTGGTCCTTGGCCAGAATCAAAGAAGCAATTCCTTAT 300
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 238 AAGGACATTTCCTTGGAGTTTTCATGGTCCTTAGCCAGAATCAAAGAAGCGATTCCTTAT 297
Query 301 GATTCAAGCACTTTGTGCCGTTCTACGCCGACTTCATGTTCACAGGAGACCCTTAAATCA 360
|||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 298 GATTCAAGCACTCTCTGCCGTTCTACGCCGGCTTCATGTTCAGAGGAGACCCTTAAATCA 357
Query 361 ATTGCAGTTTTGGTCGAAGAGCAAAATCTTCCAAAGGAAAAGATCTGGCTCTCCTCTGGG 420
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 ATTGCAGTTTTGGTTGAAGAGCAAAATCTTCCAAAGGAAAAGATGTGGCTCTCCTCTGGG 417
Query 421 ATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTC 477
Query 481 ATTAACTCTGAGCTTCCATATGGATCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCT 540
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 478 ATTAACTCTGAGCTTCCATACGGGTCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCT 537
Query 541 CTCACAGCTGCTCTCCTCGCTTCTTCTATTTCAGATAAAACCTGTGGTAATGGTTGGTCA 600
||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 538 CTCACAGCTGCTCTCCTTGCTTCTTCTATTTCAGAGAAAACCCGTGGTAACGGTTGGTCA 597
Query 601 TCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATC 657
Query 661 ATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAG 717
Query 721 TTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACC 777
Query 781 AACACTAGAGTTGGGCGGAACACAAAAGCCCTGGTCTCTGGTGTGTCACAGAGAGCGGCA 840
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 778 AACACTAGAGTTGGGCGAAACACAAAAGCTCTGGTCTCTGGTGTGTCACAGAGAGCGGTA 837
Query 841 AGACATCCCGATGCGATGAACTCGGTGTTCAACGCTGTGGATTCTATAAGCCAAGAGCTC 900
|||||||| ||||||||||| || ||||||||||| ||||||||||||||| ||||||||
Sbjct 838 AGACATCCTGATGCGATGAAGTCAGTGTTCAACGCCGTGGATTCTATAAGCAAAGAGCTC 897
Query 901 GCTGCGATCATTCAATCTAAAGACGAGACCTCAGTTACAGAGAAAGAAGAGAGTATAAAA 960
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 898 GCTGCGATCATTCAGTCTAAAGACGAGACCTCAGTTACAGAAAAAGAAGAGAGAATAAAA 957
Query 961 GAACTCATGGAGATGAACCAAGGTCTGCTCCAGTCAATGGGGGTTAGCCACAGCTCGATT 1020
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 958 GAACTCATGGAGATGAACCAAGGTCTGCTCCTGTCAATGGGGGTTAGCCACAGCTCAATC 1017
Query 1021 GAGGCTGTGATCCAAACCACGGTCAAGCACAAGCTTGTCTCCAAACTGACAGGAGCTGGT 1080
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 GAGGCTGTGATTCTAACCACGGTCAAGCACAAGCTTGTCTCCAAACTTACAGGAGCTGGT 1077
Query 1081 GGCGGCGGTTGCGTCCTCACTCTATTACCAACTGGAACGGTGGTGGACAAAGTGGTGGAG 1140
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1078 GGCGGCGGCTGCGTCCTCACTCTATTACCAACCGGGACGGTGGTGGACAAAGTGGTGGAG 1137
Query 1141 GAGCTCGAATCCAGCGGTTTTCAGTGCTTCACGGCGTCAATTGGTGGTAACGGAGCTCAG 1200
|||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1138 GAGCTCGAGTCCAGCGGTTTTCAGTGTTTCACGGCATTGATTGGTGGTAACGGAGCTCAG 1197
Query 1201 ATTAGTTATTGA-CATGACTGGAAAA-TCATATTTGGCCTCTCACCATTTTTAAACTTGC 1258
||| | |||||| || | | |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1198 ATTTGCTATTGATCAGGTC-GGAAAAATCATATTTGGCCTCTCACCATTCTTAAACTTGC 1256
Query 1259 TGACTTGTGTACTTCAAGAAGGCTGCAATT 1288
|||| |||||| |||||||||||||||||
Sbjct 1257 TGAC--GTGTACGTCAAGAAGGCTGCAATT 1284
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1287 TTTTTCTTATAACTGATGTGTTGAATGTAAAATTGCTTTATTA 1329
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1304 TTTTTCTTATAAATGATGTGTTGAATGTAAAATTGCTTTATTA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5