BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489582 Length=1405 Score E Sequences producing significant alignments: (Bits) Value AT5G27450.1 | Symbols: MVK, MK | mevalonate kinase | chr5:96906... 2037 0.0 > AT5G27450.1 | Symbols: MVK, MK | mevalonate kinase | chr5:9690607-9693225 FORWARD LENGTH=1459 Length=1459 Score = 2037 bits (1103), Expect = 0.0 Identities = 1229/1290 (95%), Gaps = 8/1290 (1%) Strand=Plus/Plus Query 1 AACACGATTCTCGTTGGCTTGAGACATTTTTCCATCTTCTAGGTTTCTTTCTTTTGCTCA 60 |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||| Sbjct 1 AACACGATTCTCGTTGGCTTCAGACA-TTTTCCATCTTCTAGGTTTCTTTC-TTT-CTCA 57 Query 61 GCAATTTCCAGCAAAATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTCGCAGGG 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 58 GCAATTTCCAGGAAAATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTTGCAGGG 117 Query 121 GAACACGCGGTTGTCCATGGATCCACCGCAGTAGCTGCCGCCATTGATCTCTACACTTAC 180 |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 118 GAACACGCTGTTGTTCATGGATCCACCGCTGTAGCTGCCGCCATTGATCTCTACACTTAC 177 Query 181 GTTACTCTCCGCTTTCCTCTTCAATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTC 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 178 GTTACTCTCCGCTTTCCTCTTCCATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTC 237 Query 241 AAGGACATTTCCTTGGAGTTTTCCTGGTCCTTGGCCAGAATCAAAGAAGCAATTCCTTAT 300 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 238 AAGGACATTTCCTTGGAGTTTTCATGGTCCTTAGCCAGAATCAAAGAAGCGATTCCTTAT 297 Query 301 GATTCAAGCACTTTGTGCCGTTCTACGCCGACTTCATGTTCACAGGAGACCCTTAAATCA 360 |||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 298 GATTCAAGCACTCTCTGCCGTTCTACGCCGGCTTCATGTTCAGAGGAGACCCTTAAATCA 357 Query 361 ATTGCAGTTTTGGTCGAAGAGCAAAATCTTCCAAAGGAAAAGATCTGGCTCTCCTCTGGG 420 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 ATTGCAGTTTTGGTTGAAGAGCAAAATCTTCCAAAGGAAAAGATGTGGCTCTCCTCTGGG 417 Query 421 ATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTC 477 Query 481 ATTAACTCTGAGCTTCCATATGGATCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCT 540 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 478 ATTAACTCTGAGCTTCCATACGGGTCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCT 537 Query 541 CTCACAGCTGCTCTCCTCGCTTCTTCTATTTCAGATAAAACCTGTGGTAATGGTTGGTCA 600 ||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||| Sbjct 538 CTCACAGCTGCTCTCCTTGCTTCTTCTATTTCAGAGAAAACCCGTGGTAACGGTTGGTCA 597 Query 601 TCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATC 657 Query 661 ATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAG 717 Query 721 TTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACC 777 Query 781 AACACTAGAGTTGGGCGGAACACAAAAGCCCTGGTCTCTGGTGTGTCACAGAGAGCGGCA 840 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | Sbjct 778 AACACTAGAGTTGGGCGAAACACAAAAGCTCTGGTCTCTGGTGTGTCACAGAGAGCGGTA 837 Query 841 AGACATCCCGATGCGATGAACTCGGTGTTCAACGCTGTGGATTCTATAAGCCAAGAGCTC 900 |||||||| ||||||||||| || ||||||||||| ||||||||||||||| |||||||| Sbjct 838 AGACATCCTGATGCGATGAAGTCAGTGTTCAACGCCGTGGATTCTATAAGCAAAGAGCTC 897 Query 901 GCTGCGATCATTCAATCTAAAGACGAGACCTCAGTTACAGAGAAAGAAGAGAGTATAAAA 960 |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 898 GCTGCGATCATTCAGTCTAAAGACGAGACCTCAGTTACAGAAAAAGAAGAGAGAATAAAA 957 Query 961 GAACTCATGGAGATGAACCAAGGTCTGCTCCAGTCAATGGGGGTTAGCCACAGCTCGATT 1020 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 958 GAACTCATGGAGATGAACCAAGGTCTGCTCCTGTCAATGGGGGTTAGCCACAGCTCAATC 1017 Query 1021 GAGGCTGTGATCCAAACCACGGTCAAGCACAAGCTTGTCTCCAAACTGACAGGAGCTGGT 1080 ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1018 GAGGCTGTGATTCTAACCACGGTCAAGCACAAGCTTGTCTCCAAACTTACAGGAGCTGGT 1077 Query 1081 GGCGGCGGTTGCGTCCTCACTCTATTACCAACTGGAACGGTGGTGGACAAAGTGGTGGAG 1140 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1078 GGCGGCGGCTGCGTCCTCACTCTATTACCAACCGGGACGGTGGTGGACAAAGTGGTGGAG 1137 Query 1141 GAGCTCGAATCCAGCGGTTTTCAGTGCTTCACGGCGTCAATTGGTGGTAACGGAGCTCAG 1200 |||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 1138 GAGCTCGAGTCCAGCGGTTTTCAGTGTTTCACGGCATTGATTGGTGGTAACGGAGCTCAG 1197 Query 1201 ATTAGTTATTGA-CATGACTGGAAAA-TCATATTTGGCCTCTCACCATTTTTAAACTTGC 1258 ||| | |||||| || | | |||||| |||||||||||||||||||||| |||||||||| Sbjct 1198 ATTTGCTATTGATCAGGTC-GGAAAAATCATATTTGGCCTCTCACCATTCTTAAACTTGC 1256 Query 1259 TGACTTGTGTACTTCAAGAAGGCTGCAATT 1288 |||| |||||| ||||||||||||||||| Sbjct 1257 TGAC--GTGTACGTCAAGAAGGCTGCAATT 1284 Score = 75.0 bits (40), Expect = 2e-12 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1287 TTTTTCTTATAACTGATGTGTTGAATGTAAAATTGCTTTATTA 1329 |||||||||||| |||||||||||||||||||||||||||||| Sbjct 1304 TTTTTCTTATAAATGATGTGTTGAATGTAAAATTGCTTTATTA 1346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69226551555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5