BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489583
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1040 0.0
> AT5G27440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, shoot,
flower, seed; EXPRESSED DURING: petal differentiation and
expansion stage, E expanded cotyledon stage; Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9689498-9690318
REVERSE LENGTH=821
Length=821
Score = 1040 bits (563), Expect = 0.0
Identities = 713/784 (91%), Gaps = 16/784 (2%)
Strand=Plus/Plus
Query 1 AGAAAACAGAAATTGCGGTAATGACTCTTCTTCATCTGACATCATCGCATCTCAATGGGT 60
|||| ||||||||||||||||||||||||||||||||| | |||||||||||| | |||
Sbjct 2 AGAAGACAGAAATTGCGGTAATGACTCTTCTTCATCTG--A-CATCGCATCTCAGTAGGT 58
Query 61 TTCATTTTCTTAATCCACAACAAAGTTC-GAAACTTTCATCAATATCTCGA--TTCTCTG 117
|||||||||||||||||||| |||| || || |||||||||||| |||||| |||| |
Sbjct 59 TTCATTTTCTTAATCCACAAAAAAG-TCTGAGACTTTCATCAATTTCTCGAGTTTCT-TC 116
Query 118 TGTCGATTTCACATCGAAACCAGTTCCAAAGTTTGGTTATTTGTGCAAAGAAGAGGaaaa 177
| |||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||
Sbjct 117 T-TCGATTTCACATCGGACCCAGTTTCAAAGTTTGGTTCTTTGTGCAAAGAAGAGGAAAC 175
Query 178 aaaGAGTTGGGTATCGAAGAATCACGAGGTTTTTGTTCAATTCAATGTCTTTACTGCCAC 237
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 176 AAAGAGTTGGGTATCGAAGAATCACGAGGTTTCTGTTCAATTCACTGTCTTTATTGGCAC 235
Query 238 CTAATCTCCAGATTTTAACACAGCCGTCGGATCTTGTTATTGCTGATTTGGGCGGCGTAG 297
||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 236 CTAATCTCCAGATTTTACCACAGCCCTTGGATCTTGTCATTGCTGATTTGGGCGGCGTAG 295
Query 298 ATggaggaggaggaagaggaggagggttagggttttggagaggatggggaagatttgatg 357
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATGGAGGAGGAGGAGGAAGAGGAGGGTTAGGGTTTTGGAGAGGATGGGGAAGATTTGATG 355
Query 358 gatggagaaggaAAAAGAACAGAGTACCAATTTTGGCTTTTGTTTGTGTGATTCTATGGG 417
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||
Sbjct 356 GATGGAGAAGGAAAAAGAACAAAGTGCCAATTTTGGTTTTTGTTTGTGTGATTCTTTGGA 415
Query 418 TTTATGGTTTCTGCAAAATCTCTGGGATAGAGATTAAGAGTGAATTGGTTTTGAAGCTTT 477
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 416 TTTATGGTTTTTGCAAAATCTCTGGGATAGAGATTAAGAGTGAATTGGTTTTGAAGGTTT 475
Query 478 TGGGACTTTGTTTCTTTGGTGTCACTATGGTTCGAGAGTTGAAGAGAGAGGCTAGAtttt 537
|||| |||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 476 TGGGGCTTTGTTTATTTGGTGTCACTGTGGTTAAAGAGTTGAAGAGAGAAGCTAGATTTT 535
Query 538 tggtttttgggtttctctgttttgttgcttcattggtttttggATTCAAGAAAGAGCATT 597
|||| |||||||||||||| | |||||||||||||||||||||| |||||||||| |||
Sbjct 536 TGGTGTTTGGGTTTCTCTGCGTCGTTGCTTCATTGGTTTTTGGATACAAGAAAGAGAATT 595
Query 598 TGGTGAAATTAGCTTTGAGAGTTAGATCTTCTTCTTCTTCAGTTCTTCATTG-TAA-AAG 655
| ||||| ||||||| ||||||||||||| |||||| |||||||| ||| ||| |||
Sbjct 596 TTGTGAAGTTAGCTTCAAGAGTTAGATCTTGTTCTTC---AGTTCTTC-TTGGTAATAAG 651
Query 656 GAGAAGTCGTAGAAGAGTTTGATTAGAGAGGAAGATTATTGATTCTGCTGTTTACTCCAT 715
||||||||||||||||| | | ||||||||||||||| |||||||| ||||||||||||
Sbjct 652 -AGAAGTCGTAGAAGAGTGTAAATAGAGAGGAAGATTAGTGATTCTGTTGTTTACTCCAT 710
Query 716 TATCTTTCAATTGAGATTTCTTTTGCTAAACTTTGATGAATTTGTCTGTAATTGGATGTG 775
||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||
Sbjct 711 TATCTTTCAATTGAGATTTTTTTTGCTAAACTTTGTTGAATTTGTCTGCAATTGGATTTG 770
Query 776 ATGA 779
||||
Sbjct 771 ATGA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5