BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489590
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27380.1 | Symbols: GSH2, GSHB | glutathione synthetase 2 | ... 2601 0.0
> AT5G27380.1 | Symbols: GSH2, GSHB | glutathione synthetase 2
| chr5:9667971-9670962 REVERSE LENGTH=1910
Length=1910
Score = 2601 bits (1408), Expect = 0.0
Identities = 1708/1850 (92%), Gaps = 32/1850 (2%)
Strand=Plus/Plus
Query 49 GGCAGTGtctgctcttctccctcttacttttcttcttccacttgctttgcctctcatttc 108
||||||| ||||||||||| |||||||| || |||||||||||| |||| || ||||
Sbjct 54 GGCAGTGGCTGCTCTTCTCTCTCTTACTCATCATCTTCCACTTGCAATGCCACTGTTTTC 113
Query 109 tcta--t-ttcttctcc-t--tcatcttcttcGCTGAAACTCAATCCAAG-ACGCTTCCT 161
|||| | ||||||||| | || |||||||||||||||||||||||||| | |||||||
Sbjct 114 TCTATTTCTTCTTCTCCATCATCTTCTTCTTCGCTGAAACTCAATCCAAGTA-GCTTCCT 172
Query 162 TTTCCATAACCCTAGAAA-TCTGAGAAAGCAGGCACCTTTGAGGTGTGGGAGATCCCTGG 220
|||||| ||||||| ||| ||||||||| ||| |||||||||||||||||||||| |
Sbjct 173 TTTCCAGAACCCTA-AAACTCTGAGAAATCAGTCACCTTTGAGGTGTGGGAGATCATTTA 231
Query 221 AGATGGAATCAAAGAAACCCATTTTCGATGTGGACACGTTTGATGATGATTTTGTTCAGA 280
||||||||||| ||||||||||||||||| |||| | || |||||||| ||||||||||
Sbjct 232 AGATGGAATCACAGAAACCCATTTTCGATTTGGAGAAATTAGATGATGAGTTTGTTCAGA 291
Query 281 AACTGGTTTATGATGCTCTCGTTTGGTCTTCTCTTCACGGACTCGTCGTCGGTGACAAAA 340
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 292 AACTGGTTTACGATGCTCTCGTTTGGTCTTCTCTTCACGGACTCGTCGTTGGTGACAAAA 351
Query 341 CTTACCAGAAATCAGGAAATGTTCCAGGGGTTGGATTGATGCACGCACCGATTGCATTGC 400
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 352 GTTATCAGAAATCAGGAAATGTTCCAGGGGTTGGATTGATGCACGCACCTATTGCATTGC 411
Query 401 TACCAACTTCATTCCCTGAAATTTATTGGAAGCAAGCTTGTGATGTTACTCCTATTTTCA 460
|||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct 412 TACCAACTGCATTCCCAGAAGCTTATTGGAAGCAAGCTTGTAATGTTACTCCTCTTTTCA 471
Query 461 ATGAATTGATTGATCGTGTTAGCTTGGATGGGAAGTTCTTACAGGATAGTCTCTCTAGAA 520
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 472 ATGAATTGATTGATCGTGTTAGCTTGGATGGCAAATTCTTACAGGATAGTCTCTCTAGAA 531
Query 521 CGAAAAAAGCTGACGTCTTTACATCTAGACTTCTCGACATTCACTCCAAGATGCTTGAAA 580
|||| |||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 532 CGAAGAAAGTTGATGTCTTTACATCTAGACTTCTTGACATTCACTCCAAGATGCTAGAAA 591
Query 581 GAAACAAGAAAGAGGATATTCGTCTGGGTTTGCAGCGGTTTGATTATATGCTTGACGAAG 640
|||| ||||||||||| |||||| ||||||| || |||||||||||||||||||||||||
Sbjct 592 GAAATAAGAAAGAGGACATTCGTTTGGGTTTACACCGGTTTGATTATATGCTTGACGAAG 651
Query 641 AAACAAATTCACTTCTTCAGATTGAGATGAACACTATCTCTTGTTCGTTTCCAGGCCTTA 700
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 652 AAACAAATTCACTTCTTCAGATTGAGATGAATACTATCTCGTGTTCGTTTCCTGGCCTTA 711
Query 701 GTCGTCTTGTTAGCCAGCTACACCAGTCATTGCTTCGATCTTATGGGGATCAGATTGGCA 760
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 712 GTCGTCTTGTTAGCCAGCTACATCAGTCATTGCTTCGATCTTATGGGGATCAGATTGGCA 771
Query 761 TAGACTCTGAACGTGTACCTAGAAATACATCCACAATCCAATTTGCTGATGCAATAGCTA 820
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||
Sbjct 772 TAGACTCTGAACGTGTACCTATAAACACATCCACAATCCAATTTGCTGATGCATTGGCTA 831
Query 821 AAGCTTGGTTGGAGTACAATAACCCAAGAGCGGTTGTCATGGTAATTGTACAGCCAGAAG 880
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 832 AAGCTTGGTTGGAGTACAGTAACCCAAGAGCGGTAGTCATGGTAATTGTACAGCCAGAAG 891
Query 881 AACGCAACATGTATGATCAACATTTGCTGAGC-----A--G-GA-ACACGCACAATATAG 931
||||||||||||| |||||||||||||||||| | | || | | ||| |||||||
Sbjct 892 AACGCAACATGTACGATCAACATTTGCTGAGCAGTATATTGAGAGAAAAGCATAATATAG 951
Query 932 TAGCCATCAGGAAGACTCTAGCAGAAGTCGAAACTGAAGGGAGTGTACAAGAGGATGGAA 991
| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 952 TTGTCATCAGGAAGACTCTAGCAGAAGTCGAAAAAGAAGGGAGTGTACAAGAGGATGAAA 1011
Query 992 CCCTTATTGTTGGCGGCCAAGCGGTCGCGGTGGTTTATTTCAGATCTGGCTATACTCCCA 1051
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 1012 CCCTTATTGTTGGCGGCCAAGCAGTCGCAGTGGTTTATTTCAGATCTGGCTATACTCCTA 1071
Query 1052 ATGATCATCCGTCTGAATCAGAATGGAATGCTAGGCTGCTTATTGAGGAGTCTTCAGCGG 1111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1072 ATGATCATCCGTCTGAATCAGAATGGAATGCTAGGCTGCTTATTGAGGAGTCTTCAGCTG 1131
Query 1112 TCAAATGCCCGAGTATAGCTTACCATTTAACTGGCAGCAAGAAAATCCAGCAAGAACTGG 1171
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1132 TCAAATGCCCGAGCATAGCTTACCATTTAACTGGCTCCAAGAAAATCCAGCAAGAACTGG 1191
Query 1172 CAAAACCAGGTGTTCTCGAGAGGTTTCTGGACAACAAAGAGGACATTGCTAAGATGAGGA 1231
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1192 CTAAACCAGGTGTTCTCGAGAGGTTTCTGGACAACAAAGAGGACATTGCTAAGCTGAGGA 1251
Query 1232 AATGCTTTGCGGGGCTTTGGAGCTTGGATGACCCAGAAATCGTCAAGCAGGCAATCGAAA 1291
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1252 AATGCTTTGCTGGGCTTTGGAGCTTGGATGACTCAGAAATTGTCAAGCAGGCTATCGAAA 1311
Query 1292 AACCCGGATTGTTCGTTATGAAGCCTCAGAGAGAAGGCGGAGGAAACAACATCTATGGAG 1351
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AACCCGGATTGTTTGTTATGAAGCCTCAGAGAGAAGGCGGAGGAAACAACATCTATGGAG 1371
Query 1352 ATGATGTGAGGGAAAATCTTTTGAGACTGCAGAAAGAAGGAAAGGACGGAAACGCTGCGT 1411
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1372 ATGATGTGAGGGAAAATCTTTTGAGACTGCAGAAAGAAGGAGAGGAAGGAAACGCTGCGT 1431
Query 1412 ATATCCTGATGCAGAGGATATTCCCAAAGGTCTCAAACATGTTCTTGGTGCGAGAAGGCG 1471
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1432 ATATCCTGATGCAGAGGATATTCCCAAAAGTCTCAAACATGTTCTTGGTGCGAGAAGGCG 1491
Query 1472 TTTACCATAAAAATCAAGTTATATCAGAACTTGGTGTCTATGGTGCTTACCTCAGGAACA 1531
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1492 TTTACCATAAGCATCAAGCTATATCAGAACTCGGTGTCTATGGTGCTTACCTCAGGAGCA 1551
Query 1532 AAGAC-AACGTTATAGTTAACGAGCAGAGTGGTTATCTAATGCGCACAAAGATCG-AGTC 1589
||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1552 AAGACGAA-GTTATAGTAAACGAGCAGAGTGGTTATCTAATGCGCACGAAGATCGCA-TC 1609
Query 1590 ATCAGATGAAGGCGGCGTTGCAGCTGGTTTTGGAGTCTTGGACAGCATTTATCTGAATTG 1649
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1610 ATCAGATGAAGGCGGCGTTGCAGCTGGTTTTGGAGTCTTGGACAGCATATATCTGATTTG 1669
Query 1650 AGATGAATCACATGCACAACCATCCTGATCAATCTTTCTGCTGGTTCGTTCCTTTTTGTT 1709
||||| || |||| |||||||||| |||||| | ||||| |||||| |||||| || ||
Sbjct 1670 AGATGGATAACATTCACAACCATCTTGATCAGTTTTTCTTCTGGTTTATTCCTTCTTCTT 1729
Query 1710 CTTCTTCTTGCTTGTTAAAGATTTGTGTATTAATTCATGAAGGTCAATAAGACTCTAGGC 1769
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1730 CT-CTTCTTGCTTGTTAAAGATTTGTGTATTAAT-CATGAAGATCAATAAGACT--AGGC 1785
Query 1770 AAAGCTCTT-ACAATTCTTTCCATAGGACCGCAAAGCATACATTGCTTATTGTTATTTT- 1827
||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1786 AAAGCTCTTTACAATTCTTTCCACAGGACCGCAAAGCCTACATTGCTTATTGTTATTTTT 1845
Query 1828 AGACCGTGTGAGACGATCACTCGTTTA-A--GATCATGAATGGAATAAGA 1874
||||||||||||| ||| ||||||||| | |||||||||| ||||||||
Sbjct 1846 AGACCGTGTGAGATGATTACTCGTTTATAAAGATCATGAATTGAATAAGA 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92770607160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5