BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489598
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50300.1 | Symbols: AZG2, ATAZG2 | Xanthine/uracil permease ... 1029 0.0
> AT5G50300.1 | Symbols: AZG2, ATAZG2 | Xanthine/uracil permease
family protein | chr5:20466068-20468124 REVERSE LENGTH=2057
Length=2057
Score = 1029 bits (557), Expect = 0.0
Identities = 877/1013 (87%), Gaps = 95/1013 (9%)
Strand=Plus/Plus
Query 781 CAA-ATCCAGTCAACGTTAGGAGCCATAAGCTTCACGGAGTTTAGAAAGAGCGAGGTTTG 839
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 CAAGATCCAGTCAACTTTAGGAGCCATAAGCTTCACGGAGTTTAGAAAGAGCGAGGTTTG 1044
Query 840 GGTCGCGTTCGCTACACTCTTTTACGTTGACCTCCTCGGCACGACTGGAGTACTCT--AC 897
||||||||||||||||||||| ||||||||||| || || ||||| |||||||||| ||
Sbjct 1045 GGTCGCGTTCGCTACACTCTTCTACGTTGACCTTCTTGGTACGACCGGAGTACTCTACAC 1104
Query 898 -A---C---GAT----GG---C-T-G-AGATAGGAGGCTTCG-TGGA-AG-A--CGG-G- 933
| | ||| || | | | |||| ||| | || | ||| || | ||| |
Sbjct 1105 AATGGCTGAGATCGGAGGATTCGTGGAAGATGGGAAG-TTTGAAGGAGAGTACGCGGCGT 1163
Query 934 A---A-TAGACGCCGGCTCCTCCGTGGTGGGATCGGCGCTAGG-GTTACAACGACGGCGA 988
| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1164 ACTTAGTAGACGCCGGCTCCTCCGTGGTGGGATCGGCGTTAGGTGTTACAACGACGGCGA 1223
Query 989 CTTTCGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAGGGAAAACAGGGCTAACGGCCGTTA 1048
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1224 CTTTTGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAGGGAAAACGGGGCTAACGGCCGTTA 1283
Query 1049 TAGTAGGAG-TGTATTTCTTGGCGTCGATGTTTTTGACGCCGTTAGTGACTAACGTGCCG 1107
| ||||| | |||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1284 TCGTAGG-GTTGTATTTCTTGGCGTCAATGTTTTTTACGCCGTTAGTTACTAACGTGCCG 1342
Query 1108 AGGTGGGCGGTCGGGCCGTCGCTGGTGATGGTTGGTGTGATGATGATGGGAGTTGTAAAA 1167
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AGGTGGGCGGTTGGACCGTCGTTGGTGATGGTTGGTGTGATGATGATGGGAGTTGTAAAA 1402
Query 1168 GATATTAGATGGGGAGAGATTAAAGAAGCCGTGACGGCATTTGTAACGATCTTGCTTATG 1227
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1403 GATATTAGATGGGGAGAGACTAAAGAAGCCGTGACAGCATTTGTAACGATCTTGCTTATG 1462
Query 1228 CCGTTGACTTATTCCATTGCTAATGGGATTATAGCTGGTATTGGTATATATCTTGC-TCT 1286
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1463 CCGTTGACTTATTCCATTGCTAATGGGATTATTGCTGGTATTGGTATATATCTTGCAT-T 1521
Query 1287 AAGCATGTACGATGTCGTTTTGGGAGTTGCAAAGTTGCTTAATGGGGTTAGGAAACGGGT 1346
||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||
Sbjct 1522 AAGCATGTACGATGTCGTTTTGGGAGTTGCAAAATGGCTTAACGGGGTTAGAAAACGGGT 1581
Query 1347 TATGAGAGAGCATAATCAAGTTTCCTCCGTTGCTACCGTCTAGATCGTTTGATTATTGAC 1406
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct 1582 TATGAGAGAGCATAATCAAGTTTCTTCCGTCGCTACCGTCGAGATCGTTTGATTATTAAC 1641
Query 1407 GATAACCGATGTCATCAAACC-GGTTTTAGTGGTGTGTGAGTGT--ACCGTGAG-TGGTG 1462
|||||||||||||| |||| | |||||||||||||||||||||| |||| || |||||
Sbjct 1642 GATAACCGATGTCA-CAAAACTGGTTTTAGTGGTGTGTGAGTGTGTACCG-GAACTGGTG 1699
Query 1463 GAACTTTTCACATGGTCGGTCGTTGGATGACCAAAG-AAAGACCCGTCATGAATGCTCT- 1520
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1700 GAATTTTTCACATGGTCGGTCGTTGGATGACCAT-GCAAAGACCCGTCATGAATGCTCTC 1758
Query 1521 --T-TTATTTT--CT-T---------------GTTGTTTTGGTTTAGTTTGCGTAG---- 1555
| || |||| || | ||||||||||||||||||||||||
Sbjct 1759 GGTGTTTTTTTTTCTCTTTCTTTTACTTTCTTGTTGTTTTGGTTTAGTTTGCGTAGGAGA 1818
Query 1556 ---TAGTGAAGTAACATTGGATGCATCAGCTGCCATGAACGTGTGTTTGATAATT-CATG 1611
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1819 GAGTAGTGAAGTAACATTGGATGCATCAGCTGCCATGAACGTGTGTTTGATAATTTCTTG 1878
Query 1612 GCTGCTTGTGCATGCATTGTTT-------GT----TTC-A-------A-CTAAATGCTTC 1651
|||||||||||||||||||||| || ||| | | |||||||||||
Sbjct 1879 GCTGCTTGTGCATGCATTGTTTCTACTTTGTAGGGTTCTATTGTTTCAACTAAATGCTTC 1938
Query 1652 TTTTGTTTGTAGCATATATTTCAGTCAAAGACTTTTGAGTCCTTCAAAAATTG 1704
||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||
Sbjct 1939 TTTTGTTTGTAGCATATATGTCAATCAAAGACTTCTGAGTCCTTCAGAAATTG 1991
Score = 636 bits (344), Expect = 0.0
Identities = 424/463 (92%), Gaps = 4/463 (1%)
Strand=Plus/Plus
Query 116 GCTGCAACCGCTACATTCCTCACCATGGCTTAT-TCATTACCGTCAACGCCAATATCTTA 174
||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 176 GCTGCGACCGCCACATTCCTCACCATGGCTTATATCATTACCGTGAACGCCAATATCTTA 235
Query 175 GCCGACTCCGGCGCGACTTGCTCCTTCCACGACTGTTCCACCGTGTCCGGTTCTTCACCA 234
||||||||||| || ||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 236 GCCGACTCCGGTGCCACTTGCTCCATCAACGACTGTTCCACCGTGGCCAGTTCTTCACCA 295
Query 235 CCGGGTCCAGAATGCGTCCTTGGTTCTAACCCTGGCTACGAAGAATGTCTTGCTAGGGTT 294
|| ||||||||||||||||| || |||||||||||||||||| ||||| || ||||||||
Sbjct 296 CCCGGTCCAGAATGCGTCCTCGGGTCTAACCCTGGCTACGAACAATGTATTTCTAGGGTT 355
Query 295 AAAAAGGACCTCGTTGTGGCTA---CTTTATCAGCCATGGTTGGTTCATTAGCAATGGGT 351
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 356 AAAAAGGACCTCGTTGTGGCTACTTCTTTATCAGCCATGGTGGGTTCATTAGCAATGGGT 415
Query 352 TTGTTCGCTAATCTACCTTTTGGACTTGCTCCGGGTATGGGCGCCAACGCTCACATCGCA 411
||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 416 TTGTTAGCTAATCTCCCTTTTGGACTTGCTCCGGGTATGGGAGCCAACGCTTACATCGCA 475
Query 412 TACAACGTTGTCGGGTTTCGTGGCTCCGGTTCAATCTCTTACCATACGGCTATGGCCATC 471
||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 476 TACAACGTTGTCGGGTTTCGTGGATCCGGTTCTATCTCTTATCATACCGCTATGGCCATT 535
Query 472 GTGCTGCTTGAGGGATGCGCATTTCTCGCGGTGTCTGCTTTAGGACTCCGCGGGAAACTG 531
||||| ||||| ||||| || |||||||| ||||| |||||||||||||||||||||||
Sbjct 536 GTGCTCCTTGAAGGATGTGCCTTTCTCGCTGTGTCGGCTTTAGGACTCCGCGGGAAACTT 595
Query 532 GCTTGTCTCATCCCTCAAACGGTGAGACTAGCCTGCACGGTCG 574
||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 596 GCTCGTCTCATCCCTCAAACGGTGAGACTGGCCTGCGCGGTCG 638
Score = 207 bits (112), Expect = 2e-52
Identities = 131/140 (94%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 575 ATGAACCAGGGCATTGGGCTCGTGGGACCGGAAAAGTCAACTCTAGTGACATTAACCG-C 633
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 674 ATGAACCAGGGCATTGGCCTCGTGGGACCGGATAAGTCAACTCTAGTGACATTAACCGCC 733
Query 634 TGTGCAGAGACGGATTCTGTCACTGGAACTTGCTTGGGAGGGAAAATGAAGAGTCCTACG 693
|| |||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 734 TGCGCAGAGACGGATCCTGTCACTGGAGCTTGCTTAGGAGGTAAAATGAAGAGTCCTACG 793
Query 694 TTTTGGTTAGCCGTCGTCGG 713
|||||||||||||| |||||
Sbjct 794 TTTTGGTTAGCCGTTGTCGG 813
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 713 GAACGTCAAAAGGTAGTATGATTTACGGAATCGTGTTTGTTACGGCTGTTTCTTGGATTA 772
||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 844 GAACGTC-AAAGGTAGTATGATTTACGGAATCGTGTTCGTCACGGCTATTTCTTGGATTA 902
Query 773 GAGGCACTCAA 783
|||||||||||
Sbjct 903 GAGGCACTCAA 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5