BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489599
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27280.1 | Symbols: | Zim17-type zinc finger protein | chr5... 937 0.0
> AT5G27280.1 | Symbols: | Zim17-type zinc finger protein | chr5:9617486-9618481
FORWARD LENGTH=813
Length=813
Score = 937 bits (507), Expect = 0.0
Identities = 700/787 (89%), Gaps = 37/787 (5%)
Strand=Plus/Plus
Query 24 GATCAACCATGGAAGCCACCTCTCTAAGCTCTGCAGCAACAATCATCTCCTCCTCATCTT 83
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GATCAACCATGGAAGCTACCTCTCTAAGCTCTGCAGCAACAATCATCTCCTCCTCATCTT 114
Query 84 CACCACTCTCCATCTTCTCTCCCAAGAAGAGAACAGACTCATCACCTTCCCCGAGAATCG 143
| ||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 115 CCCCACTCTCCATATTCTCTCCAAAGAAGCGAACAGACTCATCACCTCCCCCGAGAATCG 174
Query 144 TCCGTCTCTCCAAGAAGAAGGAAGACAAAGATTACGATCTC-CAACAATCCGAATCGAAT 202
|||||||||| || ||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 175 TCCGTCTCTCGAACAAGAAGGAAGACAAAGATTACGATC-CGCAACATTCCGAATCGAAC 233
Query 203 TCATCAAGCCTCGTGCCTCTCTTCCGAAATCGAACTCTCTCCAATGATGAGGCAATGGGA 262
||||||| | | |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 234 TCATCAA-------G-C-CTCTTCCGGAATCGAACTCTCTCCAATGATGAAGCAATGGGA 284
Query 263 TTGGTGTTGAGTGCAGCTTCGGTTAAAGGCTGGACAACTGGTTCCGGTATGGAAGGACCG 322
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 285 CTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACAACCGGTTCCGGTATGGAAGGACCG 344
Query 323 TCTCTACCGGCTAAACCCGATACAGAGACGGTTTCAACGTTTCCATGGTCATTATTCACG 382
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct 345 TCTCTACCGGCTAAAACCGATACAGACACGGTTTCCACATTTCCATGGTCATTATTCACT 404
Query 383 AAATCGCCTCGTAGGCGAATGCGTGTTGCATTCACTTGTAACGTCTGTGGGCAAAGAACT 442
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 405 AAATCGCCTCGTAGGCGAATGCGTGTTGCTTTCACTTGTAACGTATGTGGGCAAAGAACT 464
Query 443 ACAAGAGCTATTAATCCTCATGCTTACACTGACGGAACCGTCTTCGTGCAGTGTTGCGGA 502
|||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 465 ACAAGAGCTATTAATCCTCATGCTTACACTGATGGCACTGTCTTCGTGCAGTGTTGTGGA 524
Query 503 TGCAATGTGTTCCATAAGCTGGTGGATAATCTCAATTTGTTTCATGAGGTTAAGTATTAT 562
|| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 525 TGTAATGTGTTTCATAAGCTGGTCGATAATCTCAACTTGTTTCATGAGGTTAAGTATTAT 584
Query 563 GTGAGCAGCTCAAGCTTCAACTATAGAGATGCTAAGTGGGATGTTAGCGGTTTGAATCTT 622
||||||||||| |||||| | || | ||||||||||||||||||||||| |||||||||
Sbjct 585 GTGAGCAGCTCGAGCTTCGATTACACCGATGCTAAGTGGGATGTTAGCGGCTTGAATCTT 644
Query 623 TTCgatgatgaggaggatgatgatgataatgataatgatgCTGGTGATAGCAAAGACGTC 682
|||||||||||||| ||||||| | | || ||||||||||||| || |||
Sbjct 645 TTCGATGATGAGGA---TGATGAT-A-A-TG---------CTGGTGATAGCAATGATGTC 689
Query 683 TTCCCTTTGTAAAGAGCCTTTCTACAGT--CAT-GTGAT-TATCTGTGTTATA--TATCT 736
|| |||||||||||| |||||||||| | | | || || ||||||| | ||| || ||
Sbjct 690 TTTCCTTTGTAAAGAACCTTTCTACAATATCTTTGTTATATATCTGTAT-ATAGCTACCT 748
Query 737 GTGT-ATA-CATCTTGGTGTCAAATAACATTCGGAAATAATAAATTGGTTATATAGCTCA 794
||| ||| ||||||||||| || ||||||| |||| |||||||||||| ||||||||||
Sbjct 749 -TGTCATATCATCTTGGTGTGAA-TAACATTTGGAAGTAATAAATTGGTCATATAGCTCA 806
Query 795 TGTTCTG 801
|||||||
Sbjct 807 TGTTCTG 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5