BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489601
Length=3315
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27240.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 4028 0.0
> AT5G27240.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr5:9597552-9600866 FORWARD LENGTH=3315
Length=3315
Score = 4028 bits (2181), Expect = 0.0
Identities = 3006/3384 (89%), Gaps = 138/3384 (4%)
Strand=Plus/Plus
Query 1 ATGGACTGCAATAAGGAAGAGGCCTCTAGGGCAAAAACTTTAGCAGAGGATAAGATGAA- 59
|||||||| ||||| |||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGACTGGAATAAAGAAGAGGCATGTAGGGCAAAAACATTAGCAGAGGATAAGATGAAG 60
Query 60 GAATGGTGATTTTGTTGGGGCACAAAAGCTTTTATTGAAGGCTCAGAGTCT-TTTCTCAG 118
||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||| ||||
Sbjct 61 GAA-GGTGATTTTGTTGGGGCTCAGAAGCTTTTGTTGAAGGCTCAGAGTCTCTTT-TCAG 118
Query 119 GTCTTGAGACTTTACCACAAATGTTAGCCGTATGTGATGTCCATAATTCTGCTGAGAAGA 178
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 119 GTCTTGAGAGTTTACCACAAATGTTAGCTGTATGTGATGTCCATAATTCTGCCGAGAAGA 178
Query 179 AACTCAACGGTCTTGAGAACTGGTACGGTATTCTTCAAGTTATGCATTTTGCTGACGATG 238
|| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAATCAACTGTCTTGAAAACTGGTACGGTATTCTTCAAGTTATGCATTTTGCTGACGATG 238
Query 239 CTACAATCAAGAAGCAGGTCAGGAAGCTTGCTTTGCTTCTCCATCCTGACAAAAATCAGT 298
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 239 CTACAATCAAGAAGCAGGTCAGGAAGCTCGCGTTGCTTCTCCATCCTGACAAAAACCAGT 298
Query 299 TCCCTGGTGCTGAGTCTGCTTTCAAGTTGGTTTGGGATGCAAGTAGATTTCTTGCTGACA 358
|||| ||||||||| ||||||||||| ||||||||||||| || |||||||| |||||||
Sbjct 299 TCCCCGGTGCTGAGGCTGCTTTCAAGCTGGTTTGGGATGCTAGCAGATTTCTCGCTGACA 358
Query 359 AGGATAAACGGTCTCAGTATGATATAAAGCGTAGAATCTATTTACGGGTT-GCTAGTTAC 417
||||||||||||||||||||||||||| ||| ||||||||||||| |||| |||| | ||
Sbjct 359 AGGATAAACGGTCTCAGTATGATATAAGGCGCAGAATCTATTTAC-GGTTGGCTACTAAC 417
Query 418 CAGTTGAATGCAGCAAACTATGGTCTACAA--TG-TG---C---CAGTGATAGTGTTACA 468
||||||||| ||||||| |||||||||| || || | ||||| | || ||||
Sbjct 418 CAGTTGAAT---GCAAACTCTGGTCTACAATGTGCTGCTACAAACAGTGCCACTGATACA 474
Query 469 TTTTGGACATGTTGTGAGCATTGTGGTTATAGGTATAGATACTTGATAGAGTATGCGAAT 528
|||||||||||||||||||||||||| |||||||||| ||| |||| | |||||| |||
Sbjct 475 TTTTGGACATGTTGTGAGCATTGTGGCTATAGGTATAAATATTTGAGAAAGTATGTGAAC 534
Query 529 ACTCTTCTGCAA-TGTACCAGTTGTCAAAGATCCTACATGGCCTACGACACGGGATTTAA 587
| ||||||| || |||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 535 ATTCTTCTG-AACTGTAACATTTGTCAAAGATCCTACATGGCCTACGACACTGGATTTAA 593
Query 588 TGGAGCATCATTTAAATCAAGCACTGGTCAGAAAGATGTTCGAAATCAGGGGCCGTGTAA 647
|| |||| ||| |||||||| ||||||||| ||||| |||| ||||||||| || |||||
Sbjct 594 TGAAGCACCATCTAAATCAAACACTGGTCAAAAAGAAGTTCAAAATCAGGGTCCCTGTAA 653
Query 648 CACAT-CTGTGAATATAAATGCAGAGTCTACTGGTGCTCAACCAGGAAGTGTAGCAGCTG 706
||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 654 CACATCCT-TGAATACAAATGGGGAGTCTATTGGTGCTCAACCAGGAAGTGTAGCAGCTG 712
Query 707 AGGTGGATAAGAAAGGAACTTTCAATGAGGAATTCAACAAGAAGAACGGAGGAGGTGAGA 766
||||||||||||||||||||||||| || |||||||||||| ||| || ||||||||||
Sbjct 713 AGGTGGATAAGAAAGGAACTTTCAACAAGAAATTCAACAAGAGGAATGGTGGAGGTGAGA 772
Query 767 TCAAAAAGACTCATGTaaaaaaaC-CCAAAAGAAAGGCTGAATCCATGAAGAGTTATGCT 825
|||||| ||| | || ||||||| |||||| | || |||||| | || || | | |
Sbjct 773 GCAAAAAAACTGAAGT-AAAAAACTCCAAAATAGAGACTGAATTCGTG-AG-G--A--AT 825
Query 826 GAATCAAGTATACCTGAGAAAGACGAGGGAAAGATGAATAGTGCAGCTAAACTACAGAAG 885
| || | | | | || || ||||||||| ||||||||||||||||| |||
Sbjct 826 G-AT---G---A--T--G--AG--GA---AAAGATGAAGAGTGCAGCTAAACTACACAAG 867
Query 886 CCACAACCTGAGGCTACAGAACCCGAAATAGGTTTATCGAAATCTGTACCTGATGAGTCA 945
||||| ||||||| ||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 868 CCACATCCTGAGGTTACAGAACCTGAAATAGGCGCATCAAAATCTGTACCTGATGAGTCA 927
Query 946 ATTTCAAGGAGTGATCAAGTACCCTCTACAAGCAAGGACAGGAACAAGA-GGAAAAAGTG 1004
|||||||||||||| ||| ||||||||| |||||||||| |||||||| | |||||| |
Sbjct 928 GTTTCAAGGAGTGATGAAGCACCCTCTACGAGCAAGGACAAGAACAAGATGAAAAAAG-G 986
Query 1005 TGTTGAGGAGAGTATTAATGTTGATGGTTCTGATATTGTTAAGGATAAAGCGGATTCAAA 1064
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 987 TGTTGAGGAGAGTATTAATGTTGATGGTTCTGATTTTATTAAGGATAAAGCGTATTCAAA 1046
Query 1065 TGATAATAGTAAGTGGAAATCTCCAAGGAGATGCCAACAGAGTTCTTGGGC--A-GAGAA 1121
||||||| |||| ||||||||||||||||| ||||||| ||||||| || | ||| |
Sbjct 1047 AGATAATAATAAGAGGAAATCTCCAAGGAGAAGCCAACAAAGTTCTTACGCTGAGGAGGA 1106
Query 1122 GGTAGGCAGTGATGA-----TA-GCCCTCCaaaaaaaaGGTCAAGATCAAATGTTGGGTT 1175
| | ||||||| | || |||||||||||||||||| |||||||||||| || ||
Sbjct 1107 GAAAATCAGTGATAATTCCCTAGGCCCTCCAAAAAAAAGGTTAAGATCAAATGTCGGATT 1166
Query 1176 AAAATCTGAGCAAACTACAAGAAAAGGATTAGTAGGTGTTGGATCATCTACACGTCGTGA 1235
|||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1167 GAAATCTGAACAAACTACAAGAAAAGGATTAGTAGGTGTTGGATCATCTAAACGTTTTGA 1226
Query 1236 TTCTGGTGGTGGTTCAACTGCCCCTTCATGTGTGTTTAATGGAAAAGCTAAGAAATTCGT 1295
|||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 1227 TTCTGGTGGTGGTTCATCTGCCCCTTCATGTGCGTTTAAAAGAAAAGCTAAGAAATTTGT 1286
Query 1296 GGATTCTGGATATCAAGAAATCTCAGCAT-CCAAAGACAAAGTGAGAGAAGGATGTAAAG 1354
||||||||||||||||||||||||| | | ||||||||||| ||| |||| | ||||||
Sbjct 1287 GGATTCTGGATATCAAGAAATCTCATC-TGTCAAAGACAAAGAGAGGGAAGTACGTAAAG 1345
Query 1355 AAAGTGGAGAAGGGGTGGTTATGGCAGCAAAGATTGACAATAACCACAATGCTAATGAGA 1414
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 1346 CAAGTGGAGAAGGGGTGGTTATGGAAGCAAAGATTGACAATAACCACAATCCTAATGAAA 1405
Query 1415 AGCTTATTAC-GCAGGATTCGCCTGATCCAGAGTTCAGTAATTTTGAACTGACGACAAGC 1473
| |||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1406 ATCTTATTACAG-AGGATTTGCCTGATCCAGAGTTCAGTAATTTTGAACTGACAACAAGC 1464
Query 1474 TGTTTTGCTGTCAACCAGGTGTGGTCTTTGTATGATCCGACTGACGGTATGCCTCGGTTG 1533
||||||| |||||||||||||||||| |||| ||||||| ||| |||||||||||||||
Sbjct 1465 TGTTTTGGTGTCAACCAGGTGTGGTCCATGTACGATCCGATTGATGGTATGCCTCGGTTG 1524
Query 1534 TATGCTCGGATAGAAAAAGTGTTGGATT-CTGAGTTCAAGCTGTGGATTACATGGATTGA 1592
|||||||||||||| |||||||||| || ||||||||||| |||||||||| ||||||||
Sbjct 1525 TATGCTCGGATAGACAAAGTGTTGG-TTCCTGAGTTCAAGTTGTGGATTACGTGGATTGA 1583
Query 1593 CCCGCTACAGG---AT--A-ATAACTCTATTCCCATTGCTTGTGGAATCTTTCAAGTTGG 1646
|||||| |||| || | |||||||||| ||||||||||||||||||||||||| |||
Sbjct 1584 CCCGCTTCAGGATAATAAAGATAACTCTATCCCCATTGCTTGTGGAATCTTTCAAGGTGG 1643
Query 1647 GGATTCAGCCGAAGAAAACGACCACTTAAAATTTTCTAGTCAGATGTTTCACTTAACTCG 1706
|| ||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1644 GGGTTCAGAGGAAGAGAACGATCACTTAAAATTTTCTTGTCAGATGTTTCACTTAACTCG 1703
Query 1707 CAACAATAGCATCGGCATATATCCAAGAAAGGGAGAAATTTGGGCAATTTTCAGAGGCTG 1766
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 CAACAATAGCGTTGTCATATATCCAAGAAAGGGAGAAATTTGGGCAATTTTCAGAGGCTG 1763
Query 1767 GGATATCAGTTGGA--G-T-GCT-AG---CTCAGAAA-AT-C--AT-AA-A-CATCCTTA 1811
|||||||||||||| | | ||| || ||| ||| || | || || | || ||
Sbjct 1764 GGATATCAGTTGGAGTGCTAGCTCAGAAAATCATAAACATCCTTATGAATATGAT-TTTG 1822
Query 1812 T-GAA--TATG----ATTTT----AT-----TGGCCTTGGAGTGGTCTTTCTGGGAACAA 1855
| ||| | || ||||| || |||||||||||||| ||||||||||| ||
Sbjct 1823 TGGAAGTTTTGTCTAATTTTAACGATGAGAATGGCCTTGGAGTGGGCTTTCTGGGAA-AA 1881
Query 1856 GTGGAAGGGTTTGTTTCCCTCTTTCGCCAAGATGCACAGGATGGAGTCCT-CAACTTCAA 1914
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1882 GTTGAAGGGTTTGTTTCCCTCTTTCGCCAAGATGCACAGGATGGAGTTCTCCAACTTCAG 1941
Query 1915 ATTCCACCCAGCGAGATGCTCAGGTTTTCGCATAAAGTCCCATCATTCAAAATGACTGGA 1974
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1942 ATTCCACCAAGCCAGATGCTCAGGTTTTCACATAAAGTCCCATCATTCAAAATGACTGGA 2001
Query 1975 AAGGAGAGAGAAGGTGTTCCTCCTGGGTGCTTTGAATTAGATACTGCTGCTTTACCAAAA 2034
|| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2002 AAAGAGAGAGAAGGTGTTCCTCCTGGGTGCTTTGAATTAGATCCCGCTGCTTTACCAAAA 2061
Query 2035 GAATTTTTCGAGGTTTGTGATTCTAAAGTTGATGTTGGGTTGGAGAGAGAAAGGCCGAAT 2094
||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2062 GAATTGTTCGAGGTTTATGATTCTAAAGTTGATGTTGGGTTGGATAGAGAATTGCCGAAT 2121
Query 2095 GGCAAAACTGGTGGTCCTTTTCCTGAAGCTTCCAAGGTTGAAATGCAGGCAAATACTACT 2154
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2122 GGTAAAACTGGTGGTCCTTTTCCTGAAGCTTCCAAGGTTGAAATGCAGGCAAACACTAC- 2180
Query 2155 C-TAGAGAGCAGTCCAGTTAAAAAGAAACGTCCAAAAGTCCATGACAATCATGGTTCATT 2213
| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2181 CAGAGAGAGCAGTCCATTTAAAAAGAAACGTCCAAAAGTCCATGATAATCATGGTTCATT 2240
Query 2214 CTCCAAAGAATCTGATGGTAGATGCACTAATCATGAAAAGAACTCAGTGAAGAAGTCCAG 2273
|||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||
Sbjct 2241 CTCCAAAGAATCTGATGGTAGACGCACTAATCATGAAAGGAACTCAGCGAAGGAGTCCAG 2300
Query 2274 AAAGAGTGTCAAAGCAGTAGATGTCTTGAATCTGCGAAAATCTCCTCGTCTTTTGAGTGA 2333
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2301 AAAGAGTGTCAAAGCAGTAGATGCCTTGAATCTGCGAAAATCTCCTCGTCTTTTGAGTGA 2360
Query 2334 AACAAACAGTCAAGCAAATTCAAGGTCAGGCCAACAAATAGCTGAGAAGAAGAGTGCTAA 2393
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2361 AACAAACAGTCAAGCAAATTCAAGGTCAGGCCGACAAATAGCTGAGAAGAAGAGTGCTAA 2420
Query 2394 CAATGGTGAATACTGTGGACAGCGAGGTGGGTTGTCTTTATCTGGTGAGAGGATGTCTAC 2453
||||||||||| ||||||| ||| |||||| ||||||||||||||||||| | |
Sbjct 2421 CAATGGTGAATCCTGTGGAAAGCCAGGTGGATTGTCTTTATCTGGTGAGA--A-G----- 2472
Query 2454 CCCAATGATATCTGAGAAGACTATCACAACGGATTCCTCAAGAATGAGAAAAACACCTCA 2513
||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 2473 ----ATG---TCTGAGAAGACTAT-----C--A-----CAAGAATGAGAAAAACACCTCA 2513
Query 2514 GGATATACACAAACCGACAGGGAACCTAAAGAAACATGGGAGAAATGATGAGTCATTGTC 2573
|||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 2514 GGATATACACAAACCGACAGTGAACGTAAAGAAACATGGAAGAAATGATGAGTCATTGTC 2573
Query 2574 TCAGTCCAGGGGTAATGGTTTGCTAACTCAGTTGAATGGTAGTAT-AAAATGCTCAGAAC 2632
||||||||||||| |||||||||| |||||||| ||||||| ||| |||| |||||||||
Sbjct 2574 TCAGTCCAGGGGTGATGGTTTGCTGACTCAGTTAAATGGTAATATGAAAA-GCTCAGAAC 2632
Query 2633 CAGAGACTCGTGTTCCATCCAGTTGCAAAACCGTGAAAGAAAACACTTTTAACTTCGAGA 2692
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2633 CAGAGACTCGCGTGCCATCTAGTTGCAAAACCGTGAAAGAAAACACTTTTAACTTCGAGA 2692
Query 2693 ACCAGAGATCTTGGGACAAGTTCCAGATTGATCAAATATGGGCCATTTATAGCAATGACG 2752
|||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 2693 ACCAGAGATCATGGGACAAATTCCAGATTGATCAAATATGGGCTATTTACAGCAATGACA 2752
Query 2753 AAGGGATTCCCAGAAAGTATGCTCAGATCAAGAAAATCGACACAAGTCCTGAATTCAAGT 2812
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2753 AAGGGAGTCCCAGAAAGTATGCTCAGATCAAGAAAATCGACACAAGTCCTGAATTCAAGT 2812
Query 2813 TACATGTAGCACCTCTAGAGCTGTATCGCCCTCCAATACACATGCCACGCCCCGTGTGCT 2872
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2813 TACATGTAGCACCTCTAGAGCTGTATCGCCCTCCAATACACATGCCACGCCCAGTGTGCT 2872
Query 2873 GTGGGCGCTTCAAGTTGAAAACCGGTAAAGCAGAAATATTTGTACCTAGCAGCTTCTCAC 2932
|||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 2873 GTGGCCGCTTCAAGTTGAAAACCGGTAAAGCCGAAGTATATGTACCTAGCAGCTTCTCAC 2932
Query 2933 ATCAGGTTAAAGCCGTGAAGGCTAAGAGGAACAGATTCGAAGTATACCCGGGGAAGGGTG 2992
||||||||||||| || ||| |||||| ||||||||||||||||||||| ||||||||||
Sbjct 2933 ATCAGGTTAAAGCTGTCAAGACTAAGAAGAACAGATTCGAAGTATACCCAGGGAAGGGTG 2992
Query 2993 AGATCTGGGCTCTGTACAAGAACTGGAATACCACAGATTGTGCTGATACTGAAGAACTTG 3052
||||||||||||||||||||||||| || || | ||||| | |||| || ||||||||||
Sbjct 2993 AGATCTGGGCTCTGTACAAGAACTGCAACACAAGAGATTATACTGAGACGGAAGAACTTG 3052
Query 3053 AGATTGTAGAAGTAGTGGAAACCGACGAGCAAAGGATACAAGCGATG-CTTTTGACTGCT 3111
||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||
Sbjct 3053 AGATTGTAGAAGTAGTGGAAACCGACGAGCAGAGGATACAAGCAATGACTTT-GACTGCT 3111
Query 3112 AAAGAGTTTAACAACAAGCCTCTCTACGGAAGTAGTCAAGAGTCAAATGCAAGTCTTGTA 3171
|||| |||||||||||||||||| ||| |||| ||| |||||||||| |||||| || |
Sbjct 3112 AAAGGGTTTAACAACAAGCCTCTATACAGAAGGAGTGAAGAGTCAAACGCAAGTTTTATT 3171
Query 3172 AACATTCCAAAGACTGAAGTGTGTAGATTCTCGCATCAGATTCCTGCGTTTAGACATGAG 3231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 3172 GACATTCCAAAGACTGAAGTGTGTCGATTCTCGCATCAGATTCCTGCGTTTAGACACGAG 3231
Query 3232 AGAAGAGCGACTCGGTTTGGAGATGGCGAATACTGGGAGCTTGACCTGAAAGCAGTTAGG 3291
|| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 3232 AGTAGAGCGACACGGTTTGGAGATGGCCAATACTGGGAGCTTGACCTTAAAGCAGTTTTG 3291
Query 3292 GGTCTCAACTTAAAGAACCCATAG 3315
||||||||||||||||||||||||
Sbjct 3292 GGTCTCAACTTAAAGAACCCATAG 3315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164948908584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5