BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489606
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24360.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1149 0.0
AT1G24390.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 174 1e-42
> AT1G24360.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:8640582-8643478 FORWARD LENGTH=1393
Length=1393
Score = 1149 bits (622), Expect = 0.0
Identities = 668/690 (97%), Gaps = 4/690 (1%)
Strand=Plus/Plus
Query 341 AGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGTCTCGAAAGCGGCTG 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 AGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGTCTCGAAAGCGACTG 656
Query 401 ATGTGGATGCAATGATGAAAACCGCTCTTGATAAATGGGGAACCATTGATGTTGTGGTTA 460
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 ATGTGGATGCGATGATGAAAACCGCTCTTGACAAATGGGGAACCATTGATGTTGTGGTTA 716
Query 461 ACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCAATCGCAATGGGACG 520
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 ACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCAATCACAATGGGACG 776
Query 521 AAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGCAGCAGTAAAGATCA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGCAGCAGTAAAGATCA 836
Query 581 TGATGAAGAAGAAAAAGGG-AAGAATCATCAATATTTCGTCAGTTGTTGGTCTCATTGGT 639
|||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 TGATGAAGAA-AAAAAGGGGAAGAATCATCAATATCTCGTCAGTTGTTGGTCTCATTGGT 895
Query 640 AATATTGGTCAAGCAAACTACGCTGCAGCTAAAGGTGGAGTTATTGCGTTTTCCAAGACT 699
||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 896 AATATTGGTCAAGCAAACTACGCAGCGGCTAAAGGTGGAGTTATTTCGTTTTCCAAGACT 955
Query 700 ATTGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGCGGTTTGCCCCGGATTCATT 759
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 956 GCTGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGTGGTTTGCCCCGGATTCATT 1015
Query 760 GCATCTGACATGACTGCCGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGAACAATC 819
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGAACAATC 1075
Query 820 CCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGTTTGGTAGAATTCTTGGCTCTC 879
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 CCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGCTTGGTAGAATTCTTGGCTCTC 1135
Query 880 AGTCCTGCTGCCAGTTACATAACCGGACAGGCATTCACCATTGATGGAGGTATTGCTATC 939
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGATGGAGGTATTGCTATC 1195
Query 940 TAGACATTTGGTATGA-TCCGGCTTTTGTTTAGTTAAAACAATTTGGTTAAACAGACAAA 998
|||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||
Sbjct 1196 TAGACATTTGGTATGAGTC-GGCTTTTGTTTAGTTAAAACAATTTGGTAAAAGAGACAAA 1254
Query 999 GTTGAGTTCTTTCTAGCAATTGGTCGGATT 1028
|||||||||||| ||||| |||||||||||
Sbjct 1255 GTTGAGTTCTTTTTAGCACTTGGTCGGATT 1284
Score = 243 bits (131), Expect = 3e-63
Identities = 139/143 (97%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 200 TTGTGAAAGCTCAAGCGACTGCTACTGAGCAATCACCAGGCGAAGTTGTTCAAAAAGTGG 259
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 402 TTGTGAAAGCTCAAGCTACTGCTACTGAGCAATCACCAGGGGAAGTTGTTCAAAAAGTGG 461
Query 260 AATCTCCAGTGGTCGTTATCACTGGTGCCTCTAGAGGGATTGGTAAAGCAATTGCTCTAG 319
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 462 AATCTCCAGTGGTCGTTATCACTGGTGCCTCGAGAGGGATTGGTAAAGCAATTGCTCTAG 521
Query 320 CCTTGGGGAAAGCTGGCTGCAAG 342
||||||| |||||||||||||||
Sbjct 522 CCTTGGGTAAAGCTGGCTGCAAG 544
> AT1G24390.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:8648201-8648995 FORWARD LENGTH=455
Length=455
Score = 174 bits (94), Expect = 1e-42
Identities = 114/123 (93%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 907 CAGGCATTCACCATTGATGGAGGTATTGCTATCTAGACATTTGGTATGA-TCCGGCTTTT 965
||||||||||||| ||||||||||||||||| ||||||| ||||||||| | ||| ||||
Sbjct 259 CAGGCATTCACCACTGATGGAGGTATTGCTAGCTAGACAATTGGTATGAGT-CGG-TTTT 316
Query 966 GTTTAGTTAAAACAATTTGGTTAAACAGACAAAGTTGAGTTCTTTCTAGCAATTGGTCGG 1025
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 317 GTTTAGTTAAATCAATTTGGTAAAACAGACAAAGTTGAGTTCTTTCTAGCACTTGGTCGG 376
Query 1026 ATT 1028
|||
Sbjct 377 ATT 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5