BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489607
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27210.1 | Symbols: | Protein of unknown function, transmem... 1616 0.0
AT3G05010.1 | Symbols: | Protein of unknown function, transmem... 802 0.0
> AT5G27210.1 | Symbols: | Protein of unknown function, transmembrane-40
| chr5:9572100-9574135 REVERSE LENGTH=1187
Length=1187
Score = 1616 bits (875), Expect = 0.0
Identities = 1020/1088 (94%), Gaps = 18/1088 (2%)
Strand=Plus/Plus
Query 1 TAACCATTGATGAAATGCGAGTTCTTGAGGAAATTGCAGAGTCCCCTTTTCTGATTTCAC 60
||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||
Sbjct 47 TAACCATTGATGAAATGCGAGTTCTCGACGAAATTGCAGAGTCACCATTTCTGATTTCAC 106
Query 61 AGCTAAACCCTAATTCAACAGCCAATGGATATAAATGGGTCGATAAGTGCCATGGATTCT 120
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 107 CGCTAAACCCTAATTCGACAGCCAATGGATATAGATGGGTCGATAAGTGCCATGGATTCT 166
Query 121 TACACAACACGGTTCTTGTTGCGGCTTCTCTTTTCTTTGTCGCTTACTTAGCTTACGAAG 180
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 167 TACATAACACGGTTCTCGTTGCGGCTTCTCTCTTCTTCGTCGCTTACTTAGCTTACGAAG 226
Query 181 CGAAGAAGAGTTTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATCGCTTATTATG 240
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 227 CGAAGAAGAGTCTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATTGCTTATTATG 286
Query 241 GGTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGTTGGGAAT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GTTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGTTGGGAAT 346
Query 301 GTACTCCTGGGAAACAAGTTGTTTGGAATCTGTTAACTTTGTTTACAACATCTGGAATGT 360
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 347 GTACTCCTGGGAAAGAAGTTGTTTGGAATCTGTTAACTTTGTTCACAACATCTGGAATGT 406
Query 361 TGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGGAACTATGCAAGTGGTGCAG 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 407 TGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCAG 466
Query 421 AAGCATTAACTAGAACTTTCCTAATCTCGGGTTTTATTGTGGCTCTTGATTTGCTTCTCA 480
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 467 AAGCATTAACTAGAACGTTCCTAATCTCGGGTTTTATTGTTGCTCTTGATTTGCTTCTCA 526
Query 481 AGGCAATTTTTCTGTTTGGATTTGGCGTGCCATTGTTTATTGACAACAATGAAAATGGAA 540
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 527 AGGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGAA 586
Query 541 AAACGTTCAAATGGGGATTATGGATCATTCATAAGCTTCTACTCACTGGCGTTTATGGGA 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCTACTCACTGGCGTTTATGGGA 646
Query 601 TGGTATTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTACCTGCAAGGCCTGCATTCT 660
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 647 TGGTGTTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTGCCTGCAAGGCCTGCATTCT 706
Query 661 ACAACTACATAATCATCATGTTCGCCTTATACAGCCTTTACCTAGTTGCATCTGCGTTTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ACAACTACATAATCATCATGTTCGCCTTATACAGCCTTTACCTAGTTGCATCTGCGTTTA 766
Query 721 CCGCAAACAGCACGCATTTTGGATTCTGGTTGTATGGGATCATGAGTGTTTGCTACCACG 780
||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 767 CCGCAAACAACGCGCATTTTGGTTTCTGGTTATATGGGATCATGAGTGTTTGCTACCACG 826
Query 781 CGTTATACCTTCCTCTTCTTTACGTTACTTTCCTCGCAGACTTTTTCCAGGAAGAAGATC 840
| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 827 CATTATACCTTCCTCTTCTTTACATAACGTTCCTCGCAGACTTTTTCCAGGAAGAAGATT 886
Query 841 TGAACTTGGAGAATGTATACTACTCAGAGATGAGAG-ATGCTGGATTTTTCGACTCTGAT 899
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 887 TGAACTTGGAGAATGTATACTACTCAGAGATGA-AGGATGCTGGATTTTTCGACTCTGAT 945
Query 900 TGGGAATAGGACTAGGGTTACAAACATCTTCCTCATCTTCTGAATCTGTAAATACACGTT 959
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 946 TGGGAATAGGACTAGGGTAACAAACATCTTCCTCATTTTCTCAATCTGTAAATACACGTT 1005
Query 960 GGATAGGATCTCTTAAGATTCGAGGT-ATGGCCGCtttttttttCCGGCTTTGT-G--TT 1015
|| ||||||||| || || || | ||||| ||||||| ||||||||| | ||
Sbjct 1006 GGGTAGGATCTCCTA-GA----AG-TCATGGCTGCTTTTT----CCGGCTTTGGCGGGTT 1055
Query 1016 ACTTTTTAGGGTTTAGTCTTGTCTGTGTTTGTACTTGT-CCATCATGCTTCTTTCTCTTT 1074
|| ||||||||| ||||||| | | ||| ||||||| | || ||||| ||||||||||||
Sbjct 1056 ACATTTTAGGGTCTAGTCTTTTGTATGTCTGTACTTTTTCC-TCATGTTTCTTTCTCTTT 1114
Query 1075 TATTAATC 1082
||| ||||
Sbjct 1115 TATAAATC 1122
> AT3G05010.1 | Symbols: | Protein of unknown function, transmembrane-40
| chr3:1389449-1391675 FORWARD LENGTH=1270
Length=1270
Score = 802 bits (434), Expect = 0.0
Identities = 767/924 (83%), Gaps = 37/924 (4%)
Strand=Plus/Plus
Query 7 TTGATGAAATGCGAGTTCTTGAG-GAAATTGCAGAGTCCCCTTTTC-TGATTTCACAGCT 64
|||||||||||||||| | | || || ||||| ||||| || ||| ||||||| | |||
Sbjct 147 TTGATGAAATGCGAGTGC-TCAGCGAGATTGCGGAGTCACC-GTTCGTGATTTCTCGGCT 204
Query 65 AAACCCTAATTCAACAGCCA----ATGG-ATAT----AAATGGGTCGATAAGTGCCAT-G 114
|| |||| |||| || |||| | || ||| |||||||| ||||| ||| |
Sbjct 205 AAGCCCTGATTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGGAAGTGTCATGG 264
Query 115 GATTCTTACACAACACGGTTCTT-GTTGCGGCTTCTCTTTTCTTTGTCGCTTACTTAGCT 173
| ||||| || ||||||||| || ||| || ||| || | || ||||||||||||||
Sbjct 265 GTTTCTT-CATAACACGGTT-TTGGTTTTAGCATCTATTCTATTCGTCGCTTACTTAGCG 322
Query 174 TACGAAGCGAAGAAGAGTTTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATCGCT 233
||||| ||||||||||| ||||| || | || |||||||||||||| || ||||| ||
Sbjct 323 TACGAGGCGAAGAAGAGCTTGTCCAAGTTGTCTAATCGGAGATCTTACATTATGATTGCC 382
Query 234 TATTATGGGTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGT 293
|||||||| | |||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 383 TATTATGGTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGGCA 442
Query 294 TGGGAATGTACTCCTGGGAAACAAGTTGTTTGGAATCTGTTAACTTTGTTTACAACATCT 353
|||||||| ||||| |||||| ||||| |||||||| ||||||||||||| |||||||||
Sbjct 443 TGGGAATGCACTCCGGGGAAAGAAGTTATTTGGAATTTGTTAACTTTGTTCACAACATCT 502
Query 354 GGAATGTTGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGGAACTATGCAAGT 413
||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 503 GGAATGTTGTTTCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGC 562
Query 414 GGTGCAGAAGCATTAACTA-GAACTTTCCTAATCTCGGGT-TT-T-ATTGTGGCTCTTGA 469
||||| ||||||||||| | |||||||||| |||||||| || | |||| | ||| ||
Sbjct 563 GGTGCTGAAGCATTAAC-ACGAACTTTCCTCATCTCGGGGCTTGTCATTG-GTCTC--GA 618
Query 470 TTTGCTTCTCAAGGCAATTTTTCTGTTTGGATTTGGCGTGCCATTGTTTATTGACAACAA 529
|||||||||||||||||||| ||||||||| ||||| || ||||||||||| ||||||||
Sbjct 619 TTTGCTTCTCAAGGCAATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAA 678
Query 530 TGAAAATGGAAA-AACGTTCAAATGGGGATTATGGATCATTCATAAGCTTCT-ACTCA-C 586
|||| || | | || |||||||||||| |||||| |||| || ||||| || ||| | |
Sbjct 679 TGAACATATACATAA-GTTCAAATGGGGCTTATGGGTCATCCACAAGCT-CTTACT-AGC 735
Query 587 TGGCGTTTATGGGATGGTATTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTACCTGC 646
|||| ||||||||||| ||||||| ||||||||||| | |||||||| | |||||| ||
Sbjct 736 TGGCATTTATGGGATGATATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACCAGC 795
Query 647 AAGGCCTGCATTCTACAACTACATAA-TCATCATGTTCGCCTTATACAGCCTTTACCTAG 705
||| |||||||||||||| || |||| | ||||| |||||||| | | || | ||||
Sbjct 796 AAGACCTGCATTCTACAAGTATATAACTG-TCATGCTCGCCTTAAATGGGCTCTCCCTAT 854
Query 706 TTGCATCTGCGT-TTACCGCAAACAGCACGCATTTTGGATTCTGGTTGTATGGGATCATG 764
|||||| ||| | |||| |||||| | | ||||||||||| ||||||||||||||||
Sbjct 855 TTGCATGTGC-TCTTACGGCAAACGGTGCTCATTTTGGATTATGGTTGTATGGGATCACA 913
Query 765 AGTGTTTGCTACCACGCGTTATACCTTCCTCTTCTT-TACGTTACTTTCCTCGCAGACTT 823
|||||||| |||||||| || || ||||||||| || || |||||||| || ||||||||
Sbjct 914 AGTGTTTGTTACCACGCCTTCTATCTTCCTCTT-TTGTATGTTACTTTTCTTGCAGACTT 972
Query 824 TTTCCAGGAAGAAGATCTGAACTTGGAGAATGTATACTACTCAGAGATGAGAGATGCTGG 883
||||||||| ||||||||||| ||||||||||| ||||| ||||| |||| |||||||||
Sbjct 973 TTTCCAGGAGGAAGATCTGAATTTGGAGAATGTCTACTATTCAGAAATGAAAGATGCTGG 1032
Query 884 ATTTTTCGACTCTGATTGGGAATA 907
||| |||||| |||||||||||||
Sbjct 1033 ATTCTTCGACGCTGATTGGGAATA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5