BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489610
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27120.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 2691 0.0
AT3G05060.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1301 0.0
AT5G27140.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1064 0.0
> AT5G27120.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr5:9540925-9543871 FORWARD LENGTH=1856
Length=1856
Score = 2691 bits (1457), Expect = 0.0
Identities = 1672/1775 (94%), Gaps = 17/1775 (1%)
Strand=Plus/Plus
Query 1 GCGGCTCCTGATTTTAGCTCTCTCTAACGCTGCAGCTGTGCGTAAACCCTTTGAGGAGCT 60
||||||||||||||||||||||||||| |||| || ||||||| |||||| | |||||||
Sbjct 1 GCGGCTCCTGATTTTAGCTCTCTCTAAAGCTGTAGTTGTGCGTTAACCCTCTAAGGAGCT 60
Query 61 TGTGAAAATGC-ACATACTGTTTGAGACGCCAGGTGGTTTTGCAATCTTTAAAGTATTAG 119
||| ||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 61 TGTAAAAATGCTA-ATACTGTTTGAGACGCCAGGTGGTTTTGCCATCTTCAAAGTATTAA 119
Query 120 ATGAAGGAAAGCTCTCTAATGTTGAGGATATCGGTAATGAGTTCTTGACCGCAAAGTCAG 179
| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||
Sbjct 120 ACGAAGGAAAGCTCTCTAATGTTGAGGATTTGGGTAATGAGTTCTCGACCGCAAAGTTAG 179
Query 180 CCCGAAAGATGGTTAAGCTAGTAGCTTTTGACAAGTTTGACAACACAGCTGAAGCTCTTG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCGAAAGATGGTGAAGCTAGTAGCTTTTGACAAGTTTGACAACACAGCTGAAGCTCTTG 239
Query 240 AAGCAGTGGCTAAATTGCTTGAGGGAACTCCAAGCAAGGGTCTACGCAAGTTCTTGAAGG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 240 AAGCAGTGGCTAAATTGCTTGAGGGAACTCCAAGCAAGGGTCTACGCAAGTTTTTGAAAG 299
Query 300 CTAACTGTGTTGGTGAAACCTTGGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGG 359
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAACTGTGTTGGTGAAACATTAGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGG 359
Query 360 AGAAACTGAAAATAGACTGTGTTCACAACAATGCTGTTATGGAGCTGTTACGAGGTGTTA 419
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 360 AGAAACTGAAAATAGTCTGTGTTCACAACAATGCTGTTATGGAGCTGTTAAGAGGTATCA 419
Query 420 GAAGCCAGCTAAGTGAACTTATATCTGGATTGGGAGATAAAGATCTAGCTCCAATGAGCT 479
|||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct 420 GAAGCCAGCTAACTGAACTTATATCTGGATTGGGTGATCAAGATCTAGGTCCAATGAGCT 479
Query 480 TGGGGTTGTCTCACAGCCTTGCCAGATATAAACTAAAGTTCAGTACCGACAAGGTGGATA 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 TGGGGTTGTCTCACAGCCTTGCCAGATATAAACTAAAGTTCAGTTCCGACAAGGTGGATA 539
Query 540 CTATGATAATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAGAGCTCAACACGTACG 599
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 540 CCATGATAATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACG 599
Query 600 CTATGAGGGTTCGTGAATGGTATGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGG 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTATGAGGGTTCGTGAATGGTTTGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGG 659
Query 660 ACAATATCTTATATGCCAAGGCTGTTAAACTTATGGGGAATCGGGTTAATGCTGCAAAGC 719
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 660 ACAATATCTTATATGCCAAGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAAGC 719
Query 720 TAGACTTCTCTGAGATATTGGCTGATGAAGTTGAAGCAGAACTGAAAGAGGCTGCTGTGA 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TAGACTTCTCTGAGATATTGGCTGATGAAATTGAAGCAGAACTGAAAGAGGCTGCTGTGA 779
Query 780 TATCTATGGGAACTGAAGTAAGCGACCTTGATTTATTGCACATCCGAGAACTCTGTGACC 839
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 780 TATCTATGGGAACTGAAGTCAGTGACCTTGATTTATTGCACATCCGAGAACTCTGTGACC 839
Query 840 AGGTTCTTTCTCTTGCTGAGTACAGAGCTCAGCTTTTTGACTACTTGAAGAGCAGAATGA 899
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AGGTTCTTTCTCTTGCCGAGTACAGAGCTCAGCTTTATGACTACTTGAAGAGCAGAATGA 899
Query 900 ACACAATTGCACCAAATCTTTCTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATAT 959
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACACAATTGCACCAAATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATAT 959
Query 960 CTCATGGTGGTAGTTTGTTGAACCTGGCAAAGCAACCTGGAAGCACAATTCAGATTCTTG 1019
|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 960 CTCACGGTGGTAGTTTGTTGAACCTCGCAAAGCAACCTGGAAGCACGGTTCAGATTCTTG 1019
Query 1020 GAGCTGAAAAAGCCTTATTTAGAGCCCTTAAGACCAAGCACGCCACTCCAAAGTATGGTC 1079
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1020 GAGCTGAAAAAGCCTTATTTAGAGCCCTTAAGACCAAACACGCTACTCCAAAGTATGGTT 1079
Query 1080 TACTTTACCACGCATCTGTGGTTTGCCAAACTACACCAAAGAACAAGGGTAAAATTTCAC 1139
|| ||| ||| |||||||| ||| ||||| || |||| ||||||||||||||||||||||
Sbjct 1080 TAATTTTCCATGCATCTGTTGTTGGCCAAGCTGCACCGAAGAACAAGGGTAAAATTTCAC 1139
Query 1140 GGTCATTAGCTGCAAAAGCTGTTCTTGCTATCCGTTGTGATGCCCTTGGTGA-TGGCCAA 1198
||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | ||||
Sbjct 1140 GGTCACTAGCTGCAAAATCTGTTCTTGCTATCCGTTGTGATGCTCTTGGTGACTC-CCAA 1198
Query 1199 GACAACACTATGGGAGTGGAAAACCGCTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAA 1258
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 GACAACACTATGGGAGTTGAAAACCGTTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAA 1258
Query 1259 GGAAAAGATTTAGGACGTCTGTCTGGCTCAGCTAAAGGCAAACCAAAGATTGAAGTTTAT 1318
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 GGAAAAGATTTAGGACGTCTATCTGGCTCAGCTAAAGGCAAACCAAAGATTGAAGTATAT 1318
Query 1319 GACAAAGATAAAAAGAAAGGATCCGGAGGTCTGATCACTCCTGCTAAGACTTACAACACA 1378
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1319 GACAAAGATAAAAAGAAAGGATCCGGAGGTCTGATCACTCCTGCTAAGACATACAACACT 1378
Query 1379 GCTGCAGACTCTCTTCTTCAAACTCCCACAGTGGATTCAGAGAACGGTGTCaaagagaag 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 GCTGCAGACTCTCTTCTTCAAACTCCCACAGTGGATTCAGAGAACGGTGTGAAAGAGAAG 1438
Query 1439 aaagacaaaaagaagaagaagaagaagGCTGATGATGAGGAAGAACCCAAAACTGAGGAG 1498
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1439 AAAGACAAAAAGAAGAAGAAGAAG--G-CTGATGATGAGGAAGAAGCCAAAACTGAGGAG 1495
Query 1499 CCTTCgaagaagaagtcgaagaagaagaaaacaaaagcagaacctgaaaccgccgaagag 1558
|| || |||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1496 CCCTCAAAGAAGAAATCGAATAAGAAGAAGACAGAAGCAGAACCTGAAACCGCCGAAGAG 1555
Query 1559 cctgcaaagaaggagaa-aa-a-gaagagaaaacacgaggaagaggaaaccgaaatgcct 1615
||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||
Sbjct 1556 CCTGCAAAGAAGGAGAAGAAGAAGAAGAGAAAACACGAGGAAGAGGAAACTGAAATGCCT 1615
Query 1616 gctaagaagaaggaaaagagtgagaagaagaagaagaa-aa--ctgaggtctgaggagag 1672
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1616 GCTAAGAAGAAGGAAAAGAGTGAGAAGAAGAAGAAGAAGAAAACTGAGGTCTGAAGAGAC 1675
Query 1673 agttaaaaaTTTTGCGTGGTCTAGTTTCTCTACGTTGTTATCAGAAACAAAGCAAATCTT 1732
|||| | |||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 1676 CTTTAATATTTTTGCGTGGTCTAGTTTA-CT---TTGTTATCAGAAACAAAGAAAATCTT 1731
Query 1733 TTGTTGCGTTAGGTGTTAAGTAAGGtttttttttt 1767
|||| ||||||||||||||||||||||||| ||||
Sbjct 1732 TTGTGGCGTTAGGTGTTAAGTAAGGTTTTTGTTTT 1766
> AT3G05060.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr3:1412867-1415966 REVERSE LENGTH=2016
Length=2016
Score = 1301 bits (704), Expect = 0.0
Identities = 1312/1596 (82%), Gaps = 79/1596 (5%)
Strand=Plus/Plus
Query 98 TTTGCAATCTTTAAAG-TATTAGATGAAGGAAAGCTCTCTAATGTTGAGGATATCG-GTA 155
||||| ||||||||| || ||||||||||||| | |||| || |||||| | | |||
Sbjct 141 TTTGCCCTCTTTAAAGTTA-AAGATGAAGGAAAGATGGCTAACGTCGAGGAT-TTGTGTA 198
Query 156 ATGAGTTCTTGAC-C-GCAAAGTCAGCCCGAAAGATGGTTAAGCTAGTAGCTTTTGACAA 213
| |||||| ||| | || | ||||| |||||||||||||||||| ||||||||| ||
Sbjct 199 AAGAGTTC--GACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAA 256
Query 214 GTTTGACAACACAGCTGAAGCTCTTGAAGCAGTGGCTAAATTGCTTGAGGGAACTCCAAG 273
||||||||| ||| |||||||||| ||||| |||||||||||||| |||||| |||||||
Sbjct 257 GTTTGACAATACATCTGAAGCTCTCGAAGCTGTGGCTAAATTGCTGGAGGGAGCTCCAAG 316
Query 274 CAAGGGTCTACGCAAGTTCTTGAAGGCTAACTGTGTTGGTGAAACCTTGGCTGTTGCTGA 333
||| ||||| |||||||| ||||| ||||| ||| ||||||||||||||||| |||||
Sbjct 317 CAAAGGTCTGCGCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTGGCTGTGGCTGA 376
Query 334 TTCTAAGCTTGGAAATATCATCAAGGAGAAACTGAAAATAGACTGTGTTCACAACAATGC 393
||| |||||||| ||| | |||||||||||||||||||| || || |||||||||||||
Sbjct 377 TTCAAAGCTTGGGAATGTTATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGC 436
Query 394 TGTTATGGAGCTGT-TACGAGGTGTTAGAAGCCAGCTAAGTGAACTTATATCTGGATTGG 452
|||||||||||| | |||| ||||||||||| ||| | | |||||| |||||||| ||||
Sbjct 437 TGTTATGGAGCT-TCTACGTGGTGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGG 495
Query 453 GAGATAAAGATC-TAGCTCCAATGAGCTTGGGGT-TGTCTCACAGCCTTGCCAGATATAA 510
| ||| |||| | | ||||| |||||||| |||| |||||||||| || |||||||||||
Sbjct 496 GTGATCAAGA-CTTGGCTCCTATGAGCTT-GGGTCTGTCTCACAGTCTCGCCAGATATAA 553
Query 511 ACTAAAGTTCAGTACCGACAAGGTGGATACTATGATAATCCAAGCTATTGGTCTGCTTGA 570
|||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 554 GCTAAAGTTTAGTTCTGACAAGGTGGATACCATGATTATCCAAGCTATTGGTCTGCTTGA 613
Query 571 TGATCTTGACAAAGAGCTCAACACGTACGCTATGAGGGTTCGTGAATGGTATGGTTGGCA 630
|||||||||||||||||| ||||| ||||| ||||||||| | ||||||||||| |||||
Sbjct 614 TGATCTTGACAAAGAGCTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCA 673
Query 631 TTTTCCTGAGCTTGCTAAGATCGTA-CAGGACAATATCTTATATGCCAAGGCTGTTAAAC 689
|||||| ||||||||||||||| || ||| |||||||| |||||||||| ||||||||
Sbjct 674 TTTTCCCGAGCTTGCTAAGATCATATCAG-ACAATATCCTATATGCCAAATCTGTTAAA- 731
Query 690 TT-ATGGGGAATCGGGTTAATGCTGCAAAGCTAGACTTCTCTGAGATATTGGCTGATGAA 748
|| ||||| || || ||||||||||| |||||||||||||| ||||| || || ||||||
Sbjct 732 TTGATGGGAAACCGAGTTAATGCTGCTAAGCTAGACTTCTCCGAGATCTTAGCAGATGAA 791
Query 749 GTTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAGTAAGCGACCTT 808
|||| ||||| || || || || ||||||||||| |||||||| ||||| || ||| ||
Sbjct 792 ATTGAGGCAGATCTTAAGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGAC-TT 850
Query 809 -GATTTATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCTGAGTACAGAGC 867
|| || ||||||||||| |||||||||||||||||||| |||||| |||||||||||||
Sbjct 851 AGACTTGTTGCACATCCGTGAACTCTGTGACCAGGTTCTCTCTCTTTCTGAGTACAGAGC 910
Query 868 TCAGCTTTTTGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAATCTTTCTGCCCT 927
|||||||| || ||| | ||||||||||||||||| ||||| || ||||| |||||||
Sbjct 911 TCAGCTTTACGATTACCTAAAGAGCAGAATGAACACTATTGCTCCCAATCTGACTGCCCT 970
Query 928 TGTCGGGGAGCTAGTCGGTGCTCG-CTTAATATCTCATGGTGGTAGTTTGTTGAACCTGG 986
|| || ||||| || |||||||| |||| | || ||||| |||||||| ||||||||
Sbjct 971 GGTAGGAGAGCTTGTTGGTGCTCGTCTTATT-TCCCATGGAGGTAGTTTATTGAACCTCT 1029
Query 987 CAAAGCAACCTGGAAGCACAATTCAGATTCTTGGAGCTGAAAAAGC-CTTATTTAGAGCC 1045
| ||||||||||| ||||| ||||||| || ||||| |||||||| || ||||||||
Sbjct 1030 CCAAGCAACCTGGGAGCACGGTTCAGATACTCGGAGCCGAAAAAGCTCTC-TTTAGAGCT 1088
Query 1046 CTTAAGACCAAGCACGCCACTCCAAAGTATGGTCT-ACTTTACCACGCATCTGTGGTTTG 1104
|||||||| || |||||||| || ||||| ||| | | ||| | |||||||| ||||| |
Sbjct 1089 CTTAAGACAAAACACGCCACACCCAAGTACGGTTTGATTTTTC-ACGCATCTCTGGTTGG 1147
Query 1105 CCAAACTA-CACCAAAGAACAAGGGTAAA-ATTTCACGGTCATTAGCTGC-AAAAGCTGT 1161
||| | | |||||||| ||||||| ||| || || ||||| |||||||| |||| ||||
Sbjct 1148 TCAAGC-AGCACCAAAGCACAAGGG-AAAGATCTCGCGGTCTTTAGCTGCTAAAA-CTGT 1204
Query 1162 TCTTGCTATCCGTTGT-GATGCCCTTGGTGATGGCCAAGACAACACTATGGGAGTGGAAA 1220
||||||||| | || ||||| ||||||||| ||||||| ||||||||||| | ||||
Sbjct 1205 TCTTGCTATTAGG-GTTGATGCTCTTGGTGATAGCCAAGATAACACTATGGGCCTTGAAA 1263
Query 1221 ACCG--CTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGACGTCT 1278
|||| || || ||||||||| |||||||||| ||| ||||||||||||||||| |||||
Sbjct 1264 ACCGAGCT-AA-GCTTGAAGCGCGGTTGAGAAATCTTGAAGGAAAAGATTTAGGTCGTCT 1321
Query 1279 GTCTGGCTCAGCTAAAGGCAAACCAAAGATTGAAGTTTATGACAAAGATAAAAAGAAAGG 1338
|||||| ||| ||||||||||||| ||||||||||| ||| |||| |||||||||| ||
Sbjct 1322 GTCTGGTTCATCTAAAGGCAAACCTAAGATTGAAGTCTATAACAAGGATAAAAAGATGGG 1381
Query 1339 ATCCGGAGGTCTGATCACTCCTGCTAAGACTTACAACACAGCTGCAGACTCTCTTCTTC- 1397
||| || ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1382 ATCAGGCGGTCTTATCACTCCTGCTAAGACTTACAACACTGCTGCAGATTCTCTTCTTGG 1441
Query 1398 --AAACTCCCA-CAGTGGATTCAGAGAACGGTGTCaaagagaagaaagacaaaaagaaga 1454
|||| | || | | || | ||| | | ||||||| | |||||| || || || |
Sbjct 1442 GGAAAC-CTCAGC--TAAAT-CTGAGGA-GCCATCAAAGA-A-GAAAGATAAGAA-AA-A 1492
Query 1455 agaagaagaagGCT-GATGATGAGGAAGAACCCAAA-ACTGAGGAGCCTTC-gaagaaga 1511
||||||||||| | || || ||| || | ||| || | || ||||| || || ||| |
Sbjct 1493 -GAAGAAGAAGG-TAGAAGAAGAG-AA-A-CCCGAAGAG-GAAGAGCCATCAGA-GAAAA 1545
Query 1512 agtcgaagaagaagaaaacaaaagcagaacctgaaaccgccgaagagcctgcaaag-a-- 1568
|| |||||||||||| | |||||||| ||||| ||| | |||| ||||||| |
Sbjct 1546 AG---AAGAAGAAGAAAGCTGAAGCAGAAACTGAAGCCGTAGTAGAGGTTGCAAAGGAGG 1602
Query 1569 ag--ga-gaa-aa-a-gaaga-ga-aaa-cacgaggaagaggaaac--cgaa-atgcctg 1616
|| || ||| || | ||||| || ||| || |||||||| ||||| || | | || |
Sbjct 1603 AGAAGAAGAAGAATAAGAAGAAGAGAAAGCATGAGGAAGAAGAAACAACGGAGACACCAG 1662
Query 1617 ctaagaagaaggaaaagagtgagaagaagaagaaga 1652
| ||||||||||| |||| |||||||| |||||||
Sbjct 1663 CCAAGAAGAAGGATAAGAAAGAGAAGAAAAAGAAGA 1698
> AT5G27140.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr5:9548542-9550597 FORWARD LENGTH=1338
Length=1338
Score = 1064 bits (576), Expect = 0.0
Identities = 874/1017 (86%), Gaps = 23/1017 (2%)
Strand=Plus/Plus
Query 267 CTCCAAGCAAGGGTCTACGCAAGTTCTTGAAGGCTAACTGTG-T--TGGTGAAACCTTGG 323
||| ||| | |||||||| |||||| ||||| |||||||| | |||||||| ||| |
Sbjct 113 CTCGAAGGATGGGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAATCTTAG 172
Query 324 CTGTTGCTGATTCTAAGCTTGGAAATATCATCA-AGGAGAAACTGAAAATAGACTGTGTT 382
|||| |||||| | ||||||||| ||||||||| | ||||||||| | ||||| ||||||
Sbjct 173 CTGTGGCTGATCCAAAGCTTGGAGATATCATCACA-GAGAAACTGGACATAGAATGTGTT 231
Query 383 CACAACAATGCTGTTATGGAGCTGTTACGAGGTGTTAGAAGCCAGCTAAGTGAACTTATA 442
|||||| |||||||||||||||||||||||||||| ||||| ||| ||| |||||| ||
Sbjct 232 CACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAACTTTTA 291
Query 443 TCTGGATTGGGA-GATAAAGATCTAGCTCCAATGAGCTTGGGGTTGTCTCACAGCCTTGC 501
|| ||||| ||| ||||| ||| |||||||| ||||||||| |||||||||| ||||||
Sbjct 292 TCCGGATT-GGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCCTTGC 350
Query 502 CAGATATAAACTAAAGTTCA-GTACCGACAAGGTGGATACTATGATAATCCAAGCTATTG 560
|||||||||||||| ||| | | ||||| | || |||||||||| | ||||
Sbjct 351 TAGATATAAACTAAAAATCACCT-CTGACAA----G--ACCATGATAATCCTATCTATCA 403
Query 561 GTCTGCTTGATGATCTTGACAAAGAGCTCAACACGTACGCTATGAGGGTTCGTGAATGGT 620
|||||||||||||||||||||||||||| ||||| ||| ||| ||| ||| |||||| ||
Sbjct 404 GTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAATTGT 463
Query 621 ATGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGGACAATATCTTATATGCCAAGG 680
| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 464 ACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCCAAGG 523
Query 681 CT-GTTAAACTTATGGGGAATCGGGTTAATGCTGCAAAGCTAGACTTCTCTGAGATATTG 739
| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 524 -TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGATATTG 582
Query 740 GCTGATGAAGTTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAGTA 799
||||||||||||||||||||||| ||||||||| || || | |||| | ||||||||||
Sbjct 583 GCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTTCTATGGTGTCTACGAGAACTGAAGTC 642
Query 800 AGCGACCTTGATTT-ATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCTGA 858
|| ||||||||||| || |||||||| ||||||||||||||| |||||||| | |||||
Sbjct 643 AGTGACCTTGATTTGAT-GCACATCCAAGAACTCTGTGACCAAGTTCTTTCAATCGCTGA 701
Query 859 GTACAGAGCTCAGCTTTTTGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAATCT 918
| ||| | ||| ||||| |||| ||||||||| || |||||||| |||||||||||||||
Sbjct 702 GGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCAAATCT 761
Query 919 TTCTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATATCTCATGGTGGTAGTTTGTT 978
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 762 AACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCTTAATATCTCATTGTGGTAGTTTATG 821
Query 979 GAACCTGGCAAAGCAACC-TGGAAGCACAATTCAGATTCTTGGAGCTGAAAA-AGCCTTA 1036
|||||| |||||| ||| |||| |||||||||||||||||||||||||||| | ||| |
Sbjct 822 GAACCTCTCAAAGCTACCATGGA-GCACAATTCAGATTCTTGGAGCTGAAAAGACCCT-A 879
Query 1037 TTTAGAGCCCTTAAGACCAAGCACGCCACTCCAAAGTATGGTCTACTTTACCACGCATCT 1096
| || ||||||||||||||| || |||||||||||||||||| || | ||||||||| ||
Sbjct 880 TATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACGCACCT 939
Query 1097 GTGGTTTGCCAAACTACACCAAAGAACAAGGGTAAAATTTCACGGTCATTAGCTGCAAAA 1156
||||| | ||| || ||||| |||||||||||||||| |||| ||| |||||||||||
Sbjct 940 TTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTGCAAAA 999
Query 1157 GCTGTTCTTGCTATCCGTTGTGATGCCCTTGGTGATGGCCAAGACAACACTATGGGAGTG 1216
||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1000 TCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGGGAGTC 1059
Query 1217 GAAAACCGCTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGA 1273
|||| |||||||||||||||||| || ||||||| ||| |||||| ||||||||||
Sbjct 1060 GAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAGGA 1116
Score = 152 bits (82), Expect = 1e-35
Identities = 112/126 (89%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 68 ATGCACATACTGTTTGAGACGCCAGGTGGTTTTGCAATCTTTAAAGTATTAGATGAAGGA 127
|||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60
Query 128 AAGCTCTCTAATGTTGAGGATATCGGTAATGAGTTCTTGAC-C-GCAAAGTCAGCCCGAA 185
||||||||||||||||||||| | |||| |||||||| || | ||| ||||||| ||||
Sbjct 61 AAGCTCTCTAATGTTGAGGATTTGGGTACTGAGTTCT--ACTCTGCAGAGTCAGCTCGAA 118
Query 186 AGATGG 191
|||||
Sbjct 119 GGATGG 124
Score = 91.6 bits (49), Expect = 2e-17
Identities = 103/126 (82%), Gaps = 15/126 (12%)
Strand=Plus/Plus
Query 1457 aagaagaagGCTGATGATGAGGAAGAACCCAAAACTGAGGAGCCTTCgaagaagaagtcg 1516
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1156 AAGAAGGAGGCTGATGATGAGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGA-G--G 1212
Query 1517 aagaagaagaaaacaaaagcagaacctgaaaccgccgaagagcctgcaaagaaggag-aa 1575
||||| | ||| ||||||| |||||||| ||||| || ||||||||| || ||
Sbjct 1213 AAGAA-A-GAA-------GCAGAACTTGAAACCGTGGAAGATCCCGCAAAGAAG-AGCAA 1262
Query 1576 a-aaga 1580
| ||||
Sbjct 1263 ACAAGA 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5