BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489620
Length=2927
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27950.1 | Symbols: | P-loop containing nucleoside triphosp... 3819 0.0
> AT5G27950.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:9984051-9987990
FORWARD LENGTH=3098
Length=3098
Score = 3819 bits (2068), Expect = 0.0
Identities = 2619/2871 (91%), Gaps = 93/2871 (3%)
Strand=Plus/Plus
Query 25 TTTCTTTTAGATTATTTTTCATCTTGCAATGCTCAAAAAGTC--C--ACT-AT----T-T 74
||||||||||||| ||||| ||| || ||||||||||||||| | ||| || | |
Sbjct 68 TTTCTTTTAGATTGTTTTTGATCCTGAAATGCTCAAAAAGTCGTCGTACTAATCCACTAT 127
Query 75 --TGTTGGAAGATGAAACAGAATGAGAGAGACAGAAGAAAGATGTTTCATTTCTGAAATC 132
||||||||||||||||||| ||| |||||||||||||| | | ||||| |||||||
Sbjct 128 CGTGTTGGAAGATGAAACAGAGTGAAAGAGACAGAAGAAACAAGAACCATTTGTGAAATC 187
Query 133 AAGAACCATCATCATT-CATCACCAGACAAAGAATTGTTC-A--ATTTGAC---AA---- 181
|||||||||||| ||| |||||||||||| |||||||||| | ||||||| ||
Sbjct 188 AAGAACCATCATTATTCCATCACCAGACACAGAATTGTTCAATCATTTGACAAAAACCTT 247
Query 182 --AATCCATACCCTTTTGTCAAAAATCAAAAACACATGTGTTGT---T-GTCTATAGCTT 235
|||||||||||||||||| |||||| ||||| || ||| | | || ||||||||
Sbjct 248 CTAATCCATACCCTTTTGTC-AAAATC---AACACTTGGGTTTTCAATAGTTTATAGCTT 303
Query 236 TAAACCCATATGAGCGAATCTGGTTCTGTTTCTCTGGCTAATGATGATTCACGAGATTGA 295
|||||||||| || ||||||||||||||||||||||| | | | | | ||||||
Sbjct 304 TAAACCCATAAGAACGAATCTGGTTCTGTTTCTCTGG-T--T-A--A-T-----GATTGA 351
Query 296 GATTCCTTAAAAGTTTTGAttttttttATAGATTGCTTCATCTTCAATTTTCACTTTTCT 355
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 352 GATT-CTTCAAAGTTTTGATTTTTTTTGTAGATTGCTTCATCTTCAATTTTCACTTTTCA 410
Query 356 TTTGTATTAAATAATTTCTTGTTCCGAGGGGTTTTCTTGTTTCTGACAAAT---AAAAAC 412
||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 411 TTTGTATTAAACATTTTCTTGTTCCGAGGGGTTTTCTTGTTTCTGACAAATAAAAAAAAA 470
Query 413 CTTTCCTTTTCTCTCTCTGCTGTGAACTAACATTAATCAATTATCTGTCT-CTGAGTTTT 471
||||||||||||||||||| | |||| | ||||||||||||||||||||| ||||| |||
Sbjct 471 CTTTCCTTTTCTCTCTCTGTTTTGAATTTACATTAATCAATTATCTGTCTCCTGAGGTTT 530
Query 472 TATGACAACTCAAGTTGTCTTCTTGTTCAAAGTTGTGCAAT-AATTATAATAA-TGATAA 529
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 531 TATGACAACTCAAGTTGTCTTCTTGTTCAAAGTTCTGCAATAAATTATAATAATTGATAA 590
Query 530 GTTTAGTGTTGTTTTTCCTTTGTTCCTAACTACCATTCTTTTACATTGGATACGTTGAGT 589
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 591 GTTTAGAGTTCTTTTTCCTTTGTTCCTAACTACCATTC-TTTACATTGGATACGTTGAGT 649
Query 590 TTGTTGTCTTTGTCTCCATTCCACTTCCACTT-C-C-TCTTTGTTTGTCAGAAATTGGAT 646
||||||||||||||||||||||||| |||||| | | | ||| ||||||||| |||||||
Sbjct 650 TTGTTGTCTTTGTCTCCATTCCACTCCCACTTCCACTTTTTTTTTTGTCAGATATTGGAT 709
Query 647 CTCGTTCAAGTCAAATGTTAATTTCAGCTGAAAAAGGAGAGATCTTGATCCCTCAATCTC 706
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CTCGTTCAGGTCAAATGTTGATTTCAGCTGAAAAAGGAGAGATCTTGATCCCTCAATCTC 769
Query 707 CAGTTAGCTCTGAATCAGTTGTTCCTTTGGTCTATACTGATGTAAATGTTGTTCCTGAAC 766
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 770 CACTTAGCTCTGAATCTGTTGTTCCTTTGGTCTATACTGATGTCAATGTTGTTCCTGAAC 829
Query 767 ATGAAAGGAATCAGCTTGAAAAGTCAATTTCAAACCTTGAAGGGGAAGTTTTGGAGTTGA 826
||||||| ||||||||||| |||||||| ||||||||||||| |||||||| || ||||
Sbjct 830 ATGAAAGTAATCAGCTTGAGAAGTCAATATCAAACCTTGAAGAAGAAGTTTTTGAATTGA 889
Query 827 AGTCAAAGCTAAAGTCATTGGAGGAAAAGAGAAGGGAAGTTCTGAATAAGATTATAGACA 886
||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 890 AGTTGAAGCTTAAGTCTTTGGATGAAAAGAGAAAGCAAGTTCTGAATAAGATTATAGACA 949
Query 887 CTAAAGGAAGTATACGTGTGTTTTGTAGAGTTAGGCCATTTCTATTGACGGAAAGGAGAC 946
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 950 CTAAAGGAAGTATACGTGTGTTTTGTAGAGTTAGACCATTTCTATTAACGGAAAGGAGAC 1009
Query 947 CGATTAGGGAACCTGTTTCGTTTGGACCTGATAATGTTGTTATAAGATCTGCTGGAAGTC 1006
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1010 CGATTAGGGAACCTGTTTCGTTTGGACCAGATAATGTTGTTATAAGATCTGCTGGAAGTA 1069
Query 1007 G-AAAGGAATTTGAGTTTGATAAGGTTTTTCATCAATCAGCAACTCAAGAAGACGTTTTC 1065
| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1070 GTAAA-GAATTTGAGTTTGATAAAGTTTTTCATCAATCAGCAACTCAAGAAGAAGTTTTC 1128
Query 1066 GGAGAAGTGAAACCGATTCTTAGATCTGCTCTTGATGGTCACAATGTATGTGTTTTGGCG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1129 GGAGAAGTGAAACCGATTCTTAGATCTGCTCTTGATGGTCACAATGTATGTGTCTTGGCG 1188
Query 1126 TATGGTCAAACGGGGACTGGCAAGACTTTCACAATGGATGGCACAAATGAGCAACCAGGT 1185
|||||||||||||| |||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1189 TATGGTCAAACGGGAACTGGCAAGACTTTTACCATGGATGGCACAAGTGAGCAACCAGGT 1248
Query 1186 CTTGCTCCTAGAGCTATTAAAGAGCTTTTCAATGAAGCTTCAATGGATCC-TACACATTC 1244
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1249 CTTGCTCCTAGAGCTATTAAAGAGCTTTTCAATGAAGCTTCAATGGA-CCAAACACATTC 1307
Query 1245 CGTGACTTTTAAAATGAGTATGTTGGAAATCTACATGGGTAACCTGAAAGATTTGTTGTC 1304
|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1308 CGTGACATTTAGGATGAGTATGTTGGAAATCTACATGGGTAACTTGAAAGATTTGTTGTC 1367
Query 1305 TGCAAGACAGTCTTTGAAGTCATATGAAGCCTCACCTAAATGCAACCTTAATATTCAAGT 1364
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1368 TGCAAGACAGTCTTTGAAGTCATATGAAGCCTCAGCTAAATGTAACCTTAATATTCAAGT 1427
Query 1365 AGACTTAAAGGGTTCGGTCGAAATTGAGGGTTTGACTGAAGTGGAAGTACCGGATTTTAC 1424
||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1428 AGACTCAAAGGGTTCGGTTGAAATTGAGGGTTTGACTGAAGTGGAAGTAATGGATTTTAC 1487
Query 1425 AAAGGCTAGATGGTGGTACAACAAAGGGAGACGAGTGAGATCAACTTCTTGGACAAATGT 1484
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AAAGGCTAGATGGTGGTATAACAAAGGGAGACGAGTGAGATCAACTTCTTGGACAAATGT 1547
Query 1485 AAACGAAACTTCGAGCAGATCTCATTGTTTAACAAGGATCACAATCTTTCGTCGTGGGGA 1544
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1548 AAACGAAACTTCGAGCAGATCTCATTGTTTAACAAGGATCACGATCTTTCGTCGTGGAGA 1607
Query 1545 TGCTGTGGGGTCAAAAACTGAAGTTAGCAAGCTTTGGATGATAGATCTTGGAGGAAGCGA 1604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1608 TGCGGTGGGGTCAAAAACTGAAGTTAGCAAGCTTTGGATGATAGATCTTGGAGGAAGTGA 1667
Query 1605 GAGGCTCTTGAAAACTGGAGCTATAGGGCAAACAATGGATGAAGGAAGGGCCATAAACCT 1664
||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1668 GAGGCTCTTGAAAACAGGAGCTATAGGGCAAACTATGGATGAAGGTAGAGCCATAAACCT 1727
Query 1665 CTCACTTTCAGCTCTTGGAGACGTGATTGCAGCATTAAGGAGAAAGAAGGGACATGTGCC 1724
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1728 CTCACTTTCCGCTCTTGGAGACGTGATTGCAGCGTTAAGGAGAAAGAAGGGACATGTGCC 1787
Query 1725 TTACAGAAACAGCAAGCTAACTCAAATTCTTAAAGATTCTCTAGGTACTAGATCAAAGGT 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1788 TTACAGAAACAGCAAGCTAACTCAAATTCTTAAAGATTCTCTAGGTACTAGATCAAAAGT 1847
Query 1785 TCTGATGCTTGTGCACATAAGTCCACGTGATGAAGATGTTGGTGAAACAATTTGCTCGCT 1844
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1848 TCTGATGCTTGTGCACATAAGTCCACGTGATGAAGATGTTGGTGAAACAATCTGCTCTCT 1907
Query 1845 GAGCTTTACAAAACGTGCGAGAGCCGTAGAGTCTAACAGAGGATTAACAGCAGAACTCCA 1904
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1908 CAGCTTTACTAAACGTGCGAGAGCTGTAGAGTCTAACAGAGGATTAACAGCAGAACTACA 1967
Query 1905 AAAGCTAAGAGAAAAGAAAATATCGGAACTTGAAGTGGAAATGCG-AGAAACTCAAGACA 1963
||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
Sbjct 1968 AAAGCTAAGAGAAAAGAAAATATCGGAACTTGAAGAGGAAATG-GAAGAAACTCAAGA-A 2025
Query 1964 -ATTGCAAGAAGATCAAAGCGCGGTTACAGGAAGCAGAATGTCTGCTTAGTGAAAACAAG 2022
|||||||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||
Sbjct 2026 GGTTGCAAGAAGATCAAAGCGCGGTTACAGGAAGTAGAGTGTCTGGTTAATGAACACAAG 2085
Query 2023 AAACTCTTTTGGATCATCAATGATAAGCATCTAGAAGACATCGAAAAGAAAGCTATTTCG 2082
|||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2086 AAACTCTTTTGGATCACCAATGATAAGTATCTAGAAGACATTGAAAAGAAAGCTATTTCG 2145
Query 2083 CCTTTAGATCATCT-ACAAGAGACGGATGCGACCCCAAAATCATCTGATAAACTAGCCAA 2141
|||||||||||||| | |||| || ||||| || |||| ||||||||||||||||| |||
Sbjct 2146 CCTTTAGATCATCTGA-AAGACACCGATGCAACTCCAATATCATCTGATAAACTAGTCAA 2204
Query 2142 AATAAGCAAGAGTTCTGGTTTTGTCCCACGTTTCATGACTTCAACTGTTGCTAGTCGCCA 2201
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 AATAAGGAAGAGTTCTGGTTTTGTCCCACGTTTCATGACTTCAACTGTTGCTAGTCGCCA 2264
Query 2202 AAGGCAAACAATGTCAGAGAAGGAAATCAATGCAAAGTCTCAGAGCATACGATCAATGGT 2261
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2265 AAGGCAAACAATGTCAGAGAAGGAAATCAATGCAAAGGCTCAGAGCATACGATCAGTGGC 2324
Query 2262 TAAAAACCTCACTCAATTCTCCACTTCTCAGTCCCTTAGCCTCTCTGACTCACGCAA-CA 2320
|||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 2325 TAAAAATCTTACTCAGTTCTCCACTTCTCAGTCGCTTAGTCTCTCTGACTCACG-AAGCA 2383
Query 2321 GAGTTCTCCTTAGAAGATCATACACAAAGCCGCTTCAAGCTACAGCTAACAGTGGAACAA 2380
|| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 2384 AAGCTCTCCTAAGAAGATCATACACAAAACCGCTTCAAGCTGCAGCTAACAGTGGAACAC 2443
Query 2381 CACCAGAAACGCCTAAAAGACATATCAAGGATAATTCTTTACAGAGAAAGAATATGAATG 2440
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2444 CACCAGAAACGCCTAAAAGACATATCAAAGATAATTCTTTACAGAGAAAGAATATGAATG 2503
Query 2441 ATACTTCTTCACCAAGGAGCAAGATGGTTACTTCATCGGATCCAAATGTGAGAGCTAAAC 2500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2504 ATACTTCTTCACCAAGGAGCAAGATGGTTACTTCATCGGATCCAAATGTGAGAGCTAAAC 2563
Query 2501 TGTGTCACCACAGACGAAGAATGTCAAGCTTGACATGATCTAACAGTGATCTTTCTTTTC 2560
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2564 TGTGTCACCACAAACGAAGAATGTCAAGCTTGACATGATCTAACAGTTATCTTTCTTTTC 2623
Query 2561 CATCTCTTGTGAAAGTGCTGAGTATG-----AGCCT-GAG-TAGGA---TGAG--GT-TG 2607
||||| ||||||||||||||||| || || || | | | || |||| | ||
Sbjct 2624 CATCTGTTGTGAAAGTGCTGAGT-TGTTTTTAGACTTGTGGTTTGAGCCTGAGTAGGATG 2682
Query 2608 AGGCGGC--CCTG-AGTA-AGGCGA-T-GGTCGACTCG-CG-ATTTTAGGAGCATTTGAA 2659
|||||| ||| | || | | | | || | | | | | |||||| || |||| |||
Sbjct 2683 AGGCGGTGTCCTCCA-TAGAAACCACTTGG-CTAATGGTCCCATTTTAAGACCATTGGAA 2740
Query 2660 CTTGTGGATTTTGCAGTTCTGGTTTTAAAAGGATATGTTTTGTTTGTGATTGTTTCTCAA 2719
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2741 CTCGTGGAGTTTGCGGTTCTGGTTTTAAAAGGATATGTTTTGTTTGTGATTGTTTCACAG 2800
Query 2720 AATTCT-CTTTGGGTTGGTGATAGTTTGATGTTGGTTGTTTTTATGGGGTTCACAGAAAC 2778
|||| | ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 2801 AATTTTTCTTTGGGTTGGTGATAGTTTGGTGTTGGATGTTTGTATGGGGTTCACAGAAAC 2860
Query 2779 TGGATCATAATTAATATTCCAGATTCTGTCTTCTTTGGAGGGTTCAGAGAG 2829
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2861 TGGATCATAATTAATATTCCAGATTCTTTCTTCTTTGGAGGGTTCAGAGAG 2911
Score = 137 bits (74), Expect = 5e-31
Identities = 91/98 (93%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 2830 AGGGTTTTATTTTGTCATCTTTTGAAGTTCTTGATGGCACAATAGTGTTGTGGATTTTGG 2889
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2966 AGGGTTTTATTTTGTCATCTTTTGAAGTTCTTGATGGCACAATAGTGTTGTGGATA---- 3021
Query 2890 CTTCATTGTATCTTACtttttttGTTTGTTTGTAACAA 2927
|||||||||||||||| ||||| |||||||||||||||
Sbjct 3022 CTTCATTGTATCTTACGTTTTT-GTTTGTTTGTAACAA 3058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145484134700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5