BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489622
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27980.1 | Symbols: | Seed maturation protein | chr5:100157... 1107 0.0
> AT5G27980.1 | Symbols: | Seed maturation protein | chr5:10015774-10016726
REVERSE LENGTH=738
Length=738
Score = 1107 bits (599), Expect = 0.0
Identities = 675/712 (95%), Gaps = 4/712 (1%)
Strand=Plus/Plus
Query 1 AAAGAGAGAAAAATTTA-CCCAAAAATATGAGCGAAGAACAGCTGCAGAAACCTATAGAT 59
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 25 AAAGAGAGAAAGAGTTACCCCAAAAA-ATGAGCGAAGAACAGCTGCAGAAACCTATAGAT 83
Query 60 TGTGTTGATGTAAAAGGAGAGGCAGAGAAGATTTCGACAACGGAGGGAAGCATTAAGGCA 119
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 84 TGTGCTGATGTAAAAGGAGAGGCAGAGAAGATTTCGACAACGGAGGGAGGCATTAAGGCG 143
Query 120 GCGGAGGACAAAGAGAAAGGTGTTGTAGCCGAGGCCTCCGGTGAACAGGCCGAGGGAGAA 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 144 GCGGAGGACAAAGAGAAAGGTGTTGTAGCCGAGGCCTCCGGTGAACAGGCGGAGGGAGAA 203
Query 180 GTTAACCAGAAAAAGGTGGTAGCTAATCCTCTGAAATCAGAAGGAACCATAACAATTGGA 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 204 GTTAACCAGAAAAAGGTGGTAGCTAATCCTCTGAAATCGGAAGGAACCATAACAATTGGA 263
Query 240 GAGGCTCTAGAGGCAGCGGTTCTCACGGCAGGGAATAAGCCGGTGGAGTGGAGTGATGCA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 264 GAGGCTCTAGAGGCAGCGGTTCTCACGGCAGGGAATAAGCCGGTGGAGTGGAGTGACGCA 323
Query 300 GCCGCCATTCAAGCGGCCGAGGTTAGAGCCACGGGGCGGACCAACATCATGCCCGGTGGT 359
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 324 GCCGCCATTCAAGCGGCCGAGGTTAGAGCTACGGGGCGGACCAATATCATGCCCGGCGGT 383
Query 360 GTTGCGGCTTCAGCTCAATCAGCCGCCACTCTTAATGCTCGTGTCGGCTCTGACGATACC 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 384 GTTGCGGCTTCAGCTCAATCAGCCGCCACTCTTAATGCTCGTATCGGCTCTGACGATACC 443
Query 420 AAGACTACGCTAGCCGACGTTCTCACTGGAGCGAGTAGCAAATTACCGTCGGACAAAGCA 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 444 AAGACTACGCTAGCCGACGTTCTCACTGGAGCGAGTAGCAAATTACCATCGGATAAAGCA 503
Query 480 GCAACGAGAAAAGACGCTGAGGGAGTGACAGGCGCAGAGATGAGAAACGATCCTCATCTC 539
||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 504 GCAACGAGAAAGGACGCAGAGGGAGTGACTGGCGCCGAGATGAGGAACGATCCTCATCTC 563
Query 540 ACTACTTACCCAACCGGCGTGGCCGCCTCTGTTGCTGCCGCCGCTCGGATCAATCAGTC- 598
||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 564 ACTACATACCCAACCGGTGTGGCTGCCTCTGTCGCTGCCGCCGCTCGGATCAATCAGTCC 623
Query 599 AAAGTAATACAATTCTTCATTATTGGTATTGAGAAGCAAGTTTATATAAACTTAATTAAA 658
||| | || ||||||||| || ||| ||||||||||||||||||||||||||||| |||
Sbjct 624 AAA-TGATGCAATTCTTCTTTCTTGTTATTGAGAAGCAAGTTTATATAAACTTAAACAAA 682
Query 659 TGTATATATGTTGATGTATATAAGATTTTCAAGTTTTTACTTTTACCTAATT 710
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 683 TGTATATATGTTGATCTATATAAGATTCTCAAGTTTTTAATTTTACCTAATT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5