BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489625
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28020.1 | Symbols: CYSD2, ATCYSD2 | cysteine synthase D2 | ... 1539 0.0
AT5G28030.2 | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5... 1075 0.0
> AT5G28020.1 | Symbols: CYSD2, ATCYSD2 | cysteine synthase D2
| chr5:10026183-10028531 REVERSE LENGTH=1549
Length=1549
Score = 1539 bits (833), Expect = 0.0
Identities = 938/990 (95%), Gaps = 2/990 (0%)
Strand=Plus/Plus
Query 1 AGTTTCAGAAAACAGAACAACATGGAAGATCGGTGCTCGATAAAGAACGATGTCACTGAA 60
|||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 345 AGTTTCAGAAAACAGACCAACATGGAAGATCGGTGCTTGATCAAGAACGATATCACTGAA 404
Query 61 TTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGT 464
Query 121 ATCGCTGCAAAGCTTGAGATGATGGAGCCTT-TCTCTAGTGTCAAAGACAGAATCGCGTA 179
|||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 465 ATCGCTGCGAAGCTTGAGATGATGGAGCCTTGT-TCTAGCGTCAAAGACAGAATCGCGTA 523
Query 180 TAGTATGATCAAAGATGCAGAGGAGAAAGGATTGATTACTCCCGGAAAGAGTACATTGAT 239
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 524 TAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGAT 583
Query 240 TGAGCCAACGGCTGGTAACACCGGGATTGGTTTAGCCTGTGTCGGAGCTGCAAGAGGCTA 299
|||||||| |||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 584 AGAGCCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCATGGGAGCTGCAAGAGGCTA 643
Query 300 TAAAGTGATCCTTGTGATGCCTTCAACTATGAGTTTAGAGAGAAGAATCATCCTTAAGGC 359
||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||
Sbjct 644 TAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGC 703
Query 360 ATTAGGTGCAGAGCTTCATCTCTCAGAACAGCGGATAGGCCTTAAAGGAATGTTGGAGAA 419
| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 704 ACTAGGTGCAGAGCTTCATCTCTCGGACCAGCGCATAGGCCTTAAAGGAATGTTGGAGAA 763
Query 420 AACCGAAGCGATATTAAGCAAAACTCCTGGTGGTTACATTCCACAGCAGTTTGAAAATCC 479
||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 764 AACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGAAAATCC 823
Query 480 TGCAAACCCCGAGATTCATTACCAAACCACGGGACCGGAAATATGGAGAGATTCAGCTGG 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 824 TGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGG 883
Query 540 GAAAGTTGATATATTGGTTGCTGGTGTAGGGACTGGTGGAACAGCTACTGGAGTAGGGAA 599
|||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 884 GAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAA 943
Query 600 GTTCCTCAAGGAGAAGAATAAAGATATTAAGGTTTGTGTGGTGGAACCAGAAGAAAGTCC 659
||||||||||||| |||| ||||| || |||||||||||||||||||||| |||||||||
Sbjct 944 GTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCC 1003
Query 660 GGTACTGAGCGGAGGTCAACCAGGTCCACATTTGATCCAGGGAATTGGCTCTGGTATCGT 719
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1004 GGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGTATCGT 1063
Query 720 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTAAAGTGACAGGTGAAGAAGC 779
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 1064 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGC 1123
Query 780 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTATTGGTGGGAATATCCTCTGG 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1124 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGG 1183
Query 840 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACACAGGAAAACTCAT 899
|||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 1184 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCAT 1243
Query 900 TGCGGTGGTTTTTCCCAGTGGGGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGGT 959
|| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1244 TGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGAT 1303
Query 960 TAGATATGAAGCAGAGAATTTGCCTATTGA 989
||||||||||||||||||||||||||||||
Sbjct 1304 TAGATATGAAGCAGAGAATTTGCCTATTGA 1333
> AT5G28030.2 | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5:10030406-10032451
REVERSE LENGTH=1107
Length=1107
Score = 1075 bits (582), Expect = 0.0
Identities = 853/984 (87%), Gaps = 17/984 (2%)
Strand=Plus/Plus
Query 9 AAA-ACAGAA-CAACATGGAAGATCG-GTGCTCGATAAAGAACGATGTCACTGAATTGAT 65
||| ||| || |||||||||||| || || || ||| |||||||||||||||||||||||
Sbjct 35 AAAGACA-AACCAACATGGAAGACCGCGT-CTTGATCAAGAACGATGTCACTGAATTGAT 92
Query 66 TGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGTATCGC 125
||||||||||||||||||||||| || || |||| |||||||| ||||||||||| ||
Sbjct 93 AGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGGTTGTGTGGCTCGTATTGC 152
Query 126 TGCAAAGCTTGAGATGATGGAGCCTTTCTCTAGTGTCAAAGACAGAATCGCGTATAGTAT 185
||| |||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||
Sbjct 153 TGCCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGATAGAATCGCATATAGTAT 212
Query 186 GATCAAAGATGCAGAGGAGAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGCC 245
|||||||||||| || || ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 213 GATCAAAGATGCTGAAGACAAAGGATTGATTACTCCGGGAAAGAGTACATTGATTGAGGC 272
Query 246 AACGGCTGGTAACACCGGGATTGGTTTAGCCTGTGTCGGAGCTGCAAGAGGCTATAAAGT 305
||||| ||||||||||||||||||||||||| | |||| ||| ||||||| ||||||||
Sbjct 273 AACGGGTGGTAACACCGGGATTGGTTTAGCCAGCATCGGGGCTTCAAGAGGTTATAAAGT 332
Query 306 GATCCTTGTGATGCCTTCAACTATGAGTTTAGAGAGAAGAATCATCCTTAAG-GCATTAG 364
||||||| ||||||||||||| ||||||||||| || |||||||| | |||| |||||||
Sbjct 333 GATCCTTTTGATGCCTTCAACAATGAGTTTAGAAAGGAGAATCATTC-TAAGAGCATTAG 391
Query 365 GTGCAGAGCTTCATCTCTCAGAACA-GCGGATAGGCCTTAAAGGA-ATGTTGGAGAAAAC 422
|||||||| |||||||| | | ||| | |||||| |||||||| | |||||||||| |
Sbjct 392 GTGCAGAGGTTCATCTCACTG-ACATTAGCATAGGCATTAAAGGACA-GTTGGAGAAAGC 449
Query 423 CGAAGCGATATTAAGCAAAACTCCTGGTGGTTACATTCCACAGCAGTTTGA-AAATCCTG 481
||| |||||||||||||||||| ||||||||||| ||||| |||||| | |||||||
Sbjct 450 TAAAGAGATATTAAGCAAAACTCCCGGTGGTTACATACCACACCAGTTT-ATTAATCCTG 508
Query 482 CAAACCCCGAGATTCATTACCA-AACCACGGGACCGGAAATATGGAGAGATTCAGCTGGG 540
||| || ||||||||||| | ||||||||| ||||| || |||||||||||||| |||
Sbjct 509 AAAATCCAGAGATTCATTA-TAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGG 567
Query 541 AAAGTTGATATATTGGTTGCTGGTGTAGGGACTGGTGGAACAGCTACTGGAGTAGGGAAG 600
||||| ||||| || || || ||||| || ||||||||||| | ||||||| |||||||
Sbjct 568 AAAGTAGATATCTTAGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAG 627
Query 601 TTCCTCAAGGAGAAGAATAAAGATATTAAGGTTTGTGTGGTGGAACCAGAAGAAAGTCCG 660
|| || || || ||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 628 TTTCTTAAAGAAAAGAACAAAGATATTAAGGTTTGTGTGGTGGAACCTTCCGAAAGTGCG 687
Query 661 GTACTGAGCGGAGGTCAACCAGGTCCACATTTGATCCAGGGAATTGGCTCTGGT-ATCGT 719
||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| | |
Sbjct 688 GTACTCAGCGGAGGAAAACCAGGTCCACATTTGATCCAAGGAATAGGCTCTGGTGAAATT 747
Query 720 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTAAAGTGACAGGTGAAGAAGC 779
|| | |||||||||||||| ||||||||||||||| ||| ||||||| ||||| |||||
Sbjct 748 CC-AGCCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTGAGGAAGC 806
Query 780 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTATTGGTGGGAATATCCTCTGG 839
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 807 TATTGAAACAACCAAGCTTCTTGCTATCAAAGAAGGATTATTGGTTGGAATATCCTCTGG 866
Query 840 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACACAGGAAAACTCAT 899
|||| |||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 867 AGCCTCAGCTGCGGCTGCGTTAAAGGTTGCAAAGCGGCCTGAAAACGTAGGGAAACTCAT 926
Query 900 TGCGGTGGTTTTTCCCAGTGGGGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGGT 959
|| ||| ||||||| ||||| ||||||||||||||||||||| || ||||||| || ||
Sbjct 927 TGTGGTTATTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTCAGT 986
Query 960 TAGATATGAAGCAGAGAATTTGCC 983
||||||||||| |||||||||||
Sbjct 987 CAGATATGAAGCTGAGAATTTGCC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5