BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489630
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28010.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 699 0.0
AT5G28000.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 484 2e-136
> AT5G28010.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr5:10024813-10025382 FORWARD
LENGTH=501
Length=501
Score = 699 bits (378), Expect = 0.0
Identities = 444/476 (93%), Gaps = 4/476 (1%)
Strand=Plus/Plus
Query 20 CGATG-CCAAATCCTTCTCTATTAGGAGAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCC 78
||||| |||| | ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 26 CGATGCCCAAGT-CTTCTCTTTTAGGAAAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCC 84
Query 79 GCGGCAACATTCTACCACATCTATGCAGGAAGACCACACCATGTGGCTAAAGCCACTCCT 138
||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 85 GCGGCGATATTCTACCACATCTATGCTGGAAGACCACACCATGTTGCTAAAGCCACTCCT 144
Query 139 CGCAACGTCCAATCATGTGATCTCCACGATGGGGAATGGGGTACCGTAGGCAGCATCGTC 198
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 145 CGCAACGTGCAATCATGTGATCTCCATGATGGGGAATGGGGCACCGTAGGCAGCATCGTC 204
Query 199 TTTTGGAACTACGTTCATGAGGGGCAAGCAAAGGTGGCAAAAGAGAGGATTGAATTAGTA 258
| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 205 TATTGGAACTACGTTCATGAGGGACAAGCAAAGGTTGCAAAAGAGAGGATTGAATTAGTA 264
Query 259 GAGCCAGAGAAGAAACTGATAAAGTTTAGGGTCATAGAAGGAGATGTTATGGCCGAGTAC 318
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 265 GAGCCAGAGAAGAAACTGATCAAGTTTAGGGTCATTGAAGGAGATGTTATGGCTGAGTAC 324
Query 319 AAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGCAAGGAGG-AGTTGGAAGTGTTGT 377
|||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||||
Sbjct 325 AAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGGAAGGAGGGACT-GGAAGTGTTGT 383
Query 378 GAAATGGCACCTCGAATACGAGAAGATTGATGAGAACGTGGCTCATCCGGAGAATCTCCT 437
|||||||||| | || || ||||||||||||||||||||| |||| || |||||||| ||
Sbjct 384 GAAATGGCACATTGAGTATGAGAAGATTGATGAGAACGTGCCTCACCCTGAGAATCTTCT 443
Query 438 CCCTTTCTTCGCCGAGATGACCAGAGAGATCGACGAACACCTCTTATCCGAGGAAT 493
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 444 CCCTTTCTTCGCCGAGATGACCAAAGAGATTGACGAACACCTCTTATCCGAGGAAT 499
> AT5G28000.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr5:10020679-10021251 FORWARD
LENGTH=495
Length=495
Score = 484 bits (262), Expect = 2e-136
Identities = 410/482 (85%), Gaps = 8/482 (2%)
Strand=Plus/Plus
Query 17 AGGCGATGCC-AAATCCTTCTCTATTAGGAGAGCTTGAGGTAGAAGTTGAGATCAAAGCT 75
||| |||||| |||| ||||||||| |||||| |||||||||||||||| |||||| ||
Sbjct 17 AGGAGATGCCAAAAT-CTTCTCTATGGGGAGAGGTTGAGGTAGAAGTTGACATCAAATCT 75
Query 76 CCCGCGGCAACATTCTACCACA-TCTATGCAGGAAGACCACACCATGTGGCTAAAGCCAC 134
|| || | || ||||||||| | | |||| |||||||||| ||||||| |||||||||||
Sbjct 76 CCTGCTGAAAAATTCTACCA-AGTGTATGTAGGAAGACCAGACCATGTCGCTAAAGCCAC 134
Query 135 TCCTCGCAACGTCCAATCATGTGATCTCCACGATGGGGAATGGGGTACCGTAGGCAGCAT 194
| || |||| || ||| |||||||||| | || ||||||||||| ||| || |||| ||
Sbjct 135 TTCTAGCAAAGTGCAAGCATGTGATCTGCTTGAAGGGGAATGGGGCACCATAAGCAGTAT 194
Query 195 CGTCTTTTGGAACTACGTTCATGAGGGGCAA-GCAAAGGTGGCAAAAGAGAGGATTGAAT 253
||| |||||||||||| ||| |||||| |||||||||||||||||||| || ||||
Sbjct 195 TGTCAACTGGAACTACGTTTATG-CGGGCAAGGCAAAGGTGGCAAAAGAGAGAATCGAAT 253
Query 254 TAGTAGAGCCAGAGAAGAAACTGATAAAGTTTAGGGTCATAGAAGGAGATGTTATGGCCG 313
||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 254 TAGTAGAACCGGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGAGATGTTTTGGCTG 313
Query 314 AGTACAAGAGTTTCTTGATCACGATT-CAGGTGACCCCGAAGCAAGGAGGAGTTGGAAGT 372
|||||||| ||||| ||||||||| ||| ||||||||||| ||||||| |||||||||
Sbjct 314 TGTACAAGAACTTCTTTATCACGATTTCAG-TGACCCCGAAGGAAGGAGGGGTTGGAAGT 372
Query 373 GTTGTGAAATGGCACCTCGAATACGAGAAGATTGATGAGAACGTGGCTCATCCGGAGAAT 432
|| | |||||||||||| || |||||||||| ||||| ||| ||| || | || ||||||
Sbjct 373 GTGGCGAAATGGCACCTTGAGTACGAGAAGAATGATGTGAATGTGCCTGACCCCGAGAAT 432
Query 433 CTCCTCCCTTTCTTCGCCGAGATGACCAGAGAGATCGACGAACACCTCTTATCCGAGGAA 492
| ||||||||||| || |||||||| | ||||||||| |||||||||||||||||||||
Sbjct 433 TTTCTCCCTTTCTTAGCTGAGATGACTAAAGAGATCGATGAACACCTCTTATCCGAGGAA 492
Query 493 TA 494
||
Sbjct 493 TA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5