BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489637
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28040.1 | Symbols: | DNA-binding storekeeper protein-relat... 2106 0.0
> AT5G28040.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr5:10037269-10039001 REVERSE
LENGTH=1733
Length=1733
Score = 2106 bits (1140), Expect = 0.0
Identities = 1513/1683 (90%), Gaps = 65/1683 (4%)
Strand=Plus/Plus
Query 1 AATTCCTTCTTTGTGGATCTGATTCGATCAATTCGA-AAAAATATCTCTCTCGCTGCGTT 59
|||||||||||| |||||||||||||||| | | | |||||| ||||||||||| ||||
Sbjct 1 AATTCCTTCTTTCTGGATCTGATTCGATC--TACCAGAAAAATTTCTCTCTCGCTACGTT 58
Query 60 TCT-TCATGGCATCTGATCAACGTGACACTGATTTCTCCGTTGATTCACCGGGTCTAGAA 118
| | |||||||||| ||||||||||||||||||||||||| ||| ||||| | |||||||
Sbjct 59 TTTCTCATGGCATCGGATCAACGTGACACTGATTTCTCCGCTGAATCACCAGATCTAGAA 118
Query 119 GAAGACGGCGGCGGTGGCGGTGGC---CGAGGAGGAGGAGAAACTGAATCCGACGAAGAT 175
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 GAAGACGGCGGCGGTGGCGGTGGCGGAAGAGGAGGAGGAGAAACTGAATCCGACGAAGAT 178
Query 176 GTTGTTATACCTGAACCAAACGAACCCGAAGACGACGATCACGATCACGATCCTGATCCA 235
||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 179 GTTGTTATACCCGAACCAAACGAAGCCGAAGACGACGATCACGATCCCGATCCCGATCCA 238
Query 236 GAATACGAAGATCTGAATTCTCCGTCAATGATTACCGCAATTTCCACAGCTCCGGTGGCG 295
|||||||||||||||||||||||||| | | | | ||||||| |||||||| | ||
Sbjct 239 GAATACGAAGATCTGAATTCTCCGTC-A--A-T---G--ATTTCCAGAGCTCCGGCGACG 289
Query 296 AAATCAACCTCCGGAACCGTAACCGTCGCTCTTCCCGCCGGATCCGCCGTACCTGTATCT 355
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 290 AAATCATCCTCAGGAACCGTAACCGTCGCTCTTCCCGCTGGATCCGCCGTACCTGTAGCT 349
Query 356 TCAATTCCATCAGATTCCGATCAGAAATGGCACCGTATGACCGAAATCGTTCATCAGAGA 415
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 350 TCAATTCCATCAGATTCCGATCAGAAATGGCACCGTATGACTGAAATCGTTCATCAGAGA 409
Query 416 CCACCGATTGATGACTCTCGACGTTTATTCCAGAGACTATGGACTGATGAAGATGAGATC 475
|||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 410 CCACCGATTGATGATTCACGACGTTTATTCCAGAGACTATGGACTGACGAAGACGAGATC 469
Query 476 GAGCTTCTCCGTGGATTTCTCGATTACATCACGAGCCACCGTGGTAACAGCTCTCATCCG 535
|||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 470 GAGCTTCTCCGTGGCTTTCTCGATTACATCACAAACCACCGTGGTAACAGCTCTCATCCG 529
Query 536 CCGGATACGGCGCCGTTTTACGAGCAGATCAAATCGAAACTTCAATTGGATTTTAATAAG 595
|| ||||||||||||||||| || ||||| ||||| || || || || || |||||||||
Sbjct 530 CCTGATACGGCGCCGTTTTATGAACAGATTAAATCTAAGCTACAGTTAGAGTTTAATAAG 589
Query 596 AATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAG 649
Query 656 TTTAGTTCTGGTAAAGAGGTATTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATC 715
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 650 TTTAGTTCTGGTAAAGAAGTGTTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATC 709
Query 716 TCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGGTTTGAGGATAATAATGTGATG 775
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 710 TCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGTTTTGAAGATAATAATGTGATG 769
Query 776 GATTTCGAAGAAACCAATCATGTAAATAACACGAATGGTAGCTCGAGTTTCAATGTCTC- 834
||||| |||||||| ||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 770 GATTTAGAAGAAACTAATCATGTAAATAACGCGAATGGTAGCTCGGGTTTTAATGTCTCT 829
Query 835 GAT-T-G-T---G--AATGTGGATGTTGATTCTGAAAACGGTTTGGAGAAGAAAGTGACT 886
| | | | | | ||||| ||||||||||| || || ||||| ||||||||||||||
Sbjct 830 GTTATCGGTAATGCGAATGTCGATGTTGATTCGGAGAATGGTTTAGAGAAGAAAGTGACG 889
Query 887 ATTAGTAGAAAACGATCACGATCGAGGATCGGGAAGATTGATGAAGATAAGCCTGTTATT 946
|| ||||||||||||||||| || |||||||||||||| || || |||||||||||| ||
Sbjct 890 ATAAGTAGAAAACGATCACGGTCTAGGATCGGGAAGATCGACGAGGATAAGCCTGTTCTT 949
Query 947 GCTCCCTGTGACGGGCTAATGCCGAATACTGTTAATCTTAATGAGAATGTGGCTGTTGCT 1006
||||| ||||||||| | || |||||| | ||||||||||| |||||||||||||||| |
Sbjct 950 GCTCCGTGTGACGGGGTGATACCGAATGCGGTTAATCTTAACGAGAATGTGGCTGTTGGT 1009
Query 1007 GGTGATTTTAGTGATGGGAGGAAT-TTAGGAGGGTTGATAGAAGAGACGGTGAAGAATTG 1065
|||||||| |||||||||||||| || |||| |||||| ||||||||||| ||||||||
Sbjct 1010 TGTGATTTTGGTGATGGGAGGAATCTT-GGAGTGTTGATTGAAGAGACGGTTAAGAATTG 1068
Query 1066 TGTATCGCCTATGATTAAGGAGATGATGAATGGTACGACGGGTATGATGATGGCTGCGAT 1125
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1069 TGTATCGCCCATGATTAAGGAGATGATGAATAGTACGACGGGTATGATGATGGCTGCAAC 1128
Query 1126 GGGTGGGTTTCCAGGAGGTGGTGCTCATGCTCTTGGTGTGTTGAGTCCGATGTTAATGCC 1185
|||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1129 GGGTGGGTTTCCTGGAGGTGGTGCTCATGCTCTCGGTGTGTTGAGTCCGATGCTAATGCC 1188
Query 1186 GTCGATGAATTTAGGGTTTGGTGGTAAGGGAGCAGGGGACGAACGGTGGAGGAGACAGCA 1245
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1189 GTCGATGAATTTAGGGTTTGGTGGTAAGGGAGTAGGGGACGAACGGTGGAGGAGACAACA 1248
Query 1246 GATTCTTGAGTTGGAAGTGTATTCGAGGAGATTAGAATTGGTTCAAGAGCAGATTAGAGC 1305
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1249 GATTCTTGAGCTGGAAGTGTATTCGAGGAGATTAGAATTGGTTCAAGAACAGATTAGAGC 1308
Query 1306 CACAGTGAATGAGTTAAAGACAATGCCTAATGGAGGATGATGCATAAGTAA-GACTACAA 1364
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1309 CACGGTGAATGAGTTAAAGACAATGCCTAATGGAGGATGATGCATAAGGAAAGACTACAA 1368
Query 1365 TGGGTTCTTATGAGATCTTAAGTTATGAGAAAAAGACGAAGAAAGACCATGATGGTGAGG 1424
||||||||| | | | |||||||||||| || ||||||||| ||||||||||||
Sbjct 1369 TGGGTTCTT-T-A-A------GTTATGAGAAAATGATGAAGAAAGATTATGATGGTGAGG 1419
Query 1425 TATAGTATTAGCAAAAGT--TA-T---AAT-----T--CTGATGGTGATGAAATCTTTCT 1471
|||||||||||||||||| || | ||| | |||||||||||||||||||| |
Sbjct 1420 TATAGTATTAGCAAAAGTAATAATCTTAATGAAAATTTCTGATGGTGATGAAATCTTTTT 1479
Query 1472 -AGGTTTTTAGTATTTTT----CTTGATTGAATCTTTTT--AATTTTGTCGATTAGGGGT 1524
||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 1480 TAGGGTTTTAGTATTTTTTTTTCTTGATTGAATCTTTTTTTAATTTTGTCGATTAGGAGT 1539
Query 1525 GAATAACCTTTGTA-TTAGTCT-ATTAAATTATAGTTTTTGGTAGAGTTCAATaaaaaaa 1582
||||||||||||| |||| || || |||||||||||||||||||||||||| |||||||
Sbjct 1540 GAATAACCTTTGTTCTTAG-CTGAT-AAATTATAGTTTTTGGTAGAGTTCAAAAAAAAAA 1597
Query 1583 caaaaaCTATCTTGAGCTATTTGtt-t-ttttttGTGTGTGATGCATATAATATGATAAT 1640
||||||| | ||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct 1598 -AAAAACTCTTTTGTGCTATTTATAATGTTTTTT-TGTGTGATGCATATAATATGATATT 1655
Query 1641 ATA 1643
|||
Sbjct 1656 ATA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5