BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489639
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28050.2 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1242 0.0
> AT5G28050.2 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr5:10043914-10045882 REVERSE LENGTH=1053
Length=1053
Score = 1242 bits (672), Expect = 0.0
Identities = 756/795 (95%), Gaps = 11/795 (1%)
Strand=Plus/Plus
Query 212 TGGAAGCAAAAGACGGTACCATCTCCGTGGCTTCTGCATTTTCCGGTCACCAACAAGCTG 271
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 217 TGGAAGCAAAAGATGGTACCATCTCCGTAGCTTCTGCATTTTCCGGTCACCAACAAGCTG 276
Query 272 TGCACGACAGCGACCACAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTTG 331
| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 277 TTCACGATAGCGACCATAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTGG 336
Query 332 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAA-AGATGAGGTTGTCGCT 390
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 337 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAATA-ACGAGGTTGTCGCT 395
Query 391 AGCTGCCACAATATGGTTTTGAAATATACAGACCCAACTGCCCATGCTGAAGTCACCGCC 450
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 396 AGCTGCCACAATATGGTTTTGAAATATACTGACCCAACTGCACATGCTGAAGTCACTGCC 455
Query 451 ATTAGAGAGGCATGCAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTATGCA 510
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 456 ATTAGAGAGGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCA 515
Query 511 TCTTGTGAGCCGTGTCCCATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 570
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 575
Query 571 GTTTATGGAGCCAAAGCCGAAGCAGCCATAGCCATCGGGTTTGATGACTTCATCGCTGAT 630
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 576 GTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGAT 635
Query 631 GCTTTGAGAGGCACCGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 690
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GCTTTGAGAGGCACGGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 695
Query 691 AATGGTGCCGCTATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 750
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AATGGCGCTGCGATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 755
Query 751 TAAAG-ATCTTCTCCATTACCACAttcttcttcttcttcttctCCTTCATGATGGTAATT 809
||||| | |||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 756 TAAAGCA-CTTCTCCATTACCACATTCTTCTTCTTCTTCT-C-C-TTCATGATGGTAATT 811
Query 810 AGAAGTAGTAGAAGAAGAAATGCACTTGCTTTAACTAAAATAAATCTTTGTTTCAAATTA 869
||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 812 AGAAGTAGTAGAAGAAGAACTGCACTTGCTTTAACTTAAATAAATCTCTGTTTCAAATTG 871
Query 870 TTCATTTTaaaaacagaaggaaaagaaaaaaagaaaaaCTCAATTTCGGTTCTTGTTGAC 929
||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 872 TTCATTTTAAAAACAGAAGGAAACGAAAAAAA-AAA---TCAATTTCGGTTCTTGTTGAC 927
Query 930 ATGCTTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTTTCTGTCA 989
| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 928 ACGATTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTCTCTGTCA 987
Query 990 AAATCTTTATTTTCT 1004
|||||||||||||||
Sbjct 988 AAATCTTTATTTTCT 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49179229913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5