BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489643
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28150.1 | Symbols: | Plant protein of unknown function (DU... 2119 0.0
AT3G04860.1 | Symbols: | Plant protein of unknown function (DU... 830 0.0
> AT5G28150.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr5:10135434-10136977 FORWARD LENGTH=1453
Length=1453
Score = 2119 bits (1147), Expect = 0.0
Identities = 1353/1449 (93%), Gaps = 27/1449 (2%)
Strand=Plus/Plus
Query 1 TTTAAATTTGGTAATAATTCTGAGAGTGAAAGGAGTCTCCTTTTTGTCTCTTTCTGTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTTAAATTTGGTAATAATTCTGAGAGTGAAAGGAGTCTCCTTTTTGTCTCTTTCTGTCTC 71
Query 61 CGTTTTGAGTTTTTAT--------C--AA-A-ACATTTTACTTTGCCGATTTGATCTCTC 108
|||||||||||||||| | || | |||||||||||| |||||||| ||||||
Sbjct 72 CGTTTTGAGTTTTTATCAGAAGACCAAAACACACATTTTACTTTACCGATTTGCTCTCTC 131
Query 109 TTCTCTTAAATCTCTTTCCTTGATTTTTCTTGGAGACAACGGATCTAAAATCGACGACAC 168
||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 132 AAATCTCAAATCTCATTCCTTGATTTCTCTTGGAGACAACGGATCCAAAACCGACGACAC 191
Query 169 TCTCAAAACTAAATCCATGGAGATTTTTCAGATTCCGATTCAGTTTCTCCTTCTTTAA-C 227
|||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 192 TCTC-AAACCAAATCCATGGAGATTTTCCAGATTCCGATTCAGTTTCTCCTTCTCTAATC 250
Query 228 AAATCTCATCAGATTCGCCCACCAAGTGTTTGTTGAAATTCCCGAGAGAGAGATGAAGGA 287
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 251 -AATCTCATAAGATTCGCCCACCAAGTGTTTGTTGAAATTCCTGAGAGAGAGATGAAGGA 309
Query 288 TTTTCCTTCTTGCTTTGGTGAAAATGGTGTTCAAGTAGCGGATTCATCGTCTTC--C-AA 344
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||
Sbjct 310 TTTTCCTTCTTGCTTTGGTGAAAATGGAGTTCAAGTTGCGGATTCATCGTCTTCTTCGAA 369
Query 345 CTCTGGGAAAAATGCTCAGAATTTGGTTACTTGTATCTACCAGTGTCGAATTCGTGGAAG 404
||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 370 CTCCGGTAAAAACGCTCAGAATTTGGTTACTTGTATCTACCAATGTCGAATTCGCGGAAG 429
Query 405 AAATTGTTTGATCACTGTGACATGGACTAAGAATTTGATGGGTCAAAGTGTAACCGTTGG 464
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 430 AAATTGTTTGATCACTGTGACATGGACTAAGAATCTGATGGGTCAAAGTGTAACAGTTGG 489
Query 465 TGTTGATGATTCTTGTAACCAAAGT-TTGTGTAAAGTCGAGATTAAGCCGTGGTTGTTCA 523
||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
Sbjct 490 TGTTGATGATTCTTGTAACCAAAGTCTT-TGTAAAGTCGAGATTAAGCCGTGGCTGTTTA 548
Query 524 CTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTTTTGGG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTTTTGGG 608
Query 584 ATCTTTCGTCTGCGAAATTTGGATCAGGTCCTGAAGCTTTGGGAGGATTCTATGTTGGTG 643
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ATCTTTCGTCTGCGAAATTCGGATCAGGTCCTGAAGCTTTGGGAGGATTCTATGTTGGTG 668
Query 644 TTGTTGTAGACAAAGAAATGGTTTTGCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAGA 703
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TTGTTGTTGACAAAGAAATGGTTTTGCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAGA 728
Query 704 AGACGAATGCTTCGCCTTCGTCTTTAGGTGCTGTGTTTATTGCTAAGAAAGAGCATGTTT 763
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 729 AGACGAATGCTTCGCCTTCGTCTTTAGGTGCTGTGTTCATTGCTAAGAAAGAGCATGTTT 788
Query 764 TTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTGTGCGGATGGGAAAATTCATGATC 823
|||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 789 TTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTTTGCTGATGGGAAATTTCATGATC 848
Query 824 TATTGATTGAGTGTGACACGAGTGTCACTGATCCTTGTCTTGTTGTTCGTGTGGATGGGA 883
| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |
Sbjct 849 TGTTGATTGAGTGTGACACGAATGTCACCGATCCTTGTCTCGTTGTTCGTGTGGATGGTA 908
Query 884 AGACGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAACGATACGATAATTG 943
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 909 AGACGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAACGATACGATAGTTG 968
Query 944 TTAATAGAATGGCTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTCTTTGGGTTGCCTC 1003
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TTAATAAAATGACTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTCTTTGGGTTGCCTA 1028
Query 1004 CAGCGGGTAACGCCGTGTTCATGTTCAGGACTTGTCAATCTACTGAGAAGAGCTTGTCTT 1063
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CAACGGGAAACGCTGTGTTCATGTTCAGGACTTGTCAATCTACTGAGAAGAGCTTGTCTT 1088
Query 1064 TCTCAGAGGACATGACAACAACAAACTCCAAGTCTCAAAGTTTTGGTTTTTCGTTGATTC 1123
||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1089 TCTCACAGGACGTGACAACAACAAACTCCAAGTCTCATAGTTTTGGCTTTTCGTTGATTC 1148
Query 1124 TGTACGCGTGGAAGAACGAGTAGACaaaaaaaaGAGAGTTTCTGGGTGCTAACAAAAACC 1183
||||||| ||||||| |||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 1149 TGTACGCTTGGAAGAGCGAGTAGA-ACAAAAGAGAGAGTTTCTGGGTGCTAACAAAAACC 1207
Query 1184 TTAAAAGAGTTTGTTGATTCCTTATCGACATTTTTTCTGTTGATTCATAATTGGTTTCTG 1243
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1208 TTATAAGAGTTTGTTGATTCCTTATCGACATTTTTTTTGTTGATTCATGATTGGTTTCTG 1267
Query 1244 CAATATATATTTCCTTACACAATGCTGGAACCAGTTTGGTCTTGACGAATGCGATCTCTG 1303
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1268 CAATATATATTTCCTTACACAATGCTGGAACCAGTTTGGTCTTGAGGAATGTGATCTCTG 1327
Query 1304 TATACATCTGTTATTTATGTCCTAGAACTTTGTTTCCTTCT--TC-AGCTACCTTGTTAA 1360
||||||||||||| |||||| |||||| | ||||| || | || | ||||| |||
Sbjct 1328 TATACATCTGTTACTTATGTTCTAGAAAGT-GTTTC-TTATGGTCTAT-TACCTAATTAC 1384
Query 1361 ACTGCTCTCTGATCTTGTAGCTGGTGAATGTTTAGATGCTTAGCAAACTATTGATTACCT 1420
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1385 ACTGCTCTTTGATCTTGTAGCTTGTGAATGTTTAGATGCTTAGCAAACTATTGATTAGCT 1444
Query 1421 TCTTCTTTC 1429
|||||||||
Sbjct 1445 TCTTCTTTC 1453
> AT3G04860.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr3:1339104-1340623 REVERSE LENGTH=1437
Length=1437
Score = 830 bits (449), Expect = 0.0
Identities = 742/880 (84%), Gaps = 33/880 (4%)
Strand=Plus/Plus
Query 286 GATTTTCCTTCTTGCTTTGGTGAAAATGGTGTTCAAG-TAGCGGATTCATCGTCTT-C-C 342
|||||||||||||||| ||||||||||||||||| || | ||||| || ||||||| | |
Sbjct 329 GATTTTCCTTCTTGCTCTGGTGAAAATGGTGTTC-AGATTGCGGACTCTTCGTCTTCCTC 387
Query 343 -AACTCTGGGAA-AAATGCTCAGAATTTGGTTACT-TGTATCTACCAG-TGTCGAATTCG 398
| | || |||| ||||||||||||||||| || | || ||||||| | || || || ||
Sbjct 388 GAGCGCT-GGAAGAAATGCTCAGAATTTGG-TAATATGCATCTACC-GTTGCCGCATCCG 444
Query 399 TGGAAGAAATTGTTTGATCACTGTGACATGGACTAAGAATTTGATGGGTCAAAGTGTAAC 458
|| || | ||| |||||||| || ||||||||||||||| |||||||||| |||| ||
Sbjct 445 AGGTAGGACTTGCTTGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTAC 504
Query 459 CGTTGGTGTTGATGATTCTTGTAACCAAAGTTTGTGTAAAGTCGAGATTAAGCCGTGGTT 518
||| || |||||||||||||| |||| |||| |||||||||||||||||||||||||| |
Sbjct 505 CGTGGGGGTTGATGATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCT 564
Query 519 GTTCACTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTT 578
||||||||||| |||||||| |||| | ||||||||||| | |||||||||||||||||
Sbjct 565 CTTCACTAAACGAAAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTT 624
Query 579 TTGGGATCTTTCGTCTGCGAAATTTGGAT-CAGGTCCTGAAGCTTTGGGAGGATTCTATG 637
|||||||| |||||||| |||||||||| || | |||||| |||| ||||| |||||||
Sbjct 625 CTGGGATCTCTCGTCTGCTAAATTTGGATCCA-GCCCTGAACCTTTAGGAGGGTTCTATG 683
Query 638 TTGGTGTTGTTGTAGACAAAGAAATGGTT-TTGCTTCTTGGTGATATGAAGAAAGAAGCT 696
|||| |||||||| |||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 684 TTGGAGTTGTTGTTGACAAAGAGATGGTTCTT-CTTCTTGGTGATATGAAGAAAGAAGCT 742
Query 697 TTTAAGAAGACGAATGCTTCGCCTTCGTC-T-TT-AGGTGCTGTGTTTATTGCTAAGAAA 753
||||| |||||||||||| | ||||| || | || |||||||||||| ||||||||||||
Sbjct 743 TTTAAAAAGACGAATGCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAA 802
Query 754 GAGCATGTTTTTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTGTGCG-GATGGGAA 812
|||||||| ||||| |||||| ||||||||| ||||||||| ||| | | ||||| ||
Sbjct 803 GAGCATGTCTTTGGCAAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAG-GTGATGGCAA 861
Query 813 AATTCATGATCTAT-TGATTGAGTGTGACACGAGTGTCACTGATCCTTGTCTTGTTGTTC 871
|| ||||||||| | |||| ||||||||||| ||| ||| |||||||||||| ||||||
Sbjct 862 AACTCATGATCT-TGTGATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTC 920
Query 872 GTGTGGATGGGAAGA-CGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAAC 930
|||| ||||| |||| | ||| |||| ||| |||||||| | |||||||| |||||||||
Sbjct 921 GTGTCGATGGAAAGATC-TTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAAC 979
Query 931 GATACGATAATTGTTAATAGAATGGCTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTC 990
||||| |||||||| |||||||| ||||||||||||| |||||||| || |||||| ||
Sbjct 980 GATACCATAATTGTCAATAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTC 1039
Query 991 TTTGGGTTGCC-TC--CAGCGGGTAACGCCGTGTTCATGTTCAGGACTTGTCAATCTACT 1047
||||||||||| || || | || || || ||||| ||||||||||||||||||||| |
Sbjct 1040 TTTGGGTTGCCATCATCACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTT 1099
Query 1048 GAGAAGAGCTTGTCTTTCTCAGAGGACATGACAACAACAAACTCCAAGTCTCAAAGTTTT 1107
|| |||| || ||||||| || ||| | | || | | ||| || ||||||||||||
Sbjct 1100 GAAAAGACCTGGTCTTTCACACAGGTCC---C--CA-CGAGCTCAAAATCTCAAAGTTTT 1153
Query 1108 GGTTTTTCGTTGATTCTGTACGCGTGGAAGAACGAGTAGA 1147
|| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1154 GGGTTTTCATTGATTCTGTATGCTTGGAAGAACGAGTAGA 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5